Lsi05G013040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G013040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP-dependent Clp protease ATP-binding subunit CLPT1
Location	chr05: 20801145 .. 20805119 (-)
RNA-Seq Expression	Lsi05G013040
Synteny	Lsi05G013040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGACCCTAAGCAGGGCCCAAATCGGGAGAGCAAGAAGCACACGAAACGCCATAGCCATACCCAACCAAACCCATCTTCGTTCTTATTATCAACTCTCTCCGGACCTGCTTTTCAGTCTCCTCCAAAATTGAGCTTTCCTTAGCCTTCTAATGGCGGCTAGCTTGAATTCTCTTTCGCTTTCCCAACTCCCATTCTCCCTTCCAGCACAATCTAATTGTTATTCTTTAGAACACAAAGCTCTATTCCTTCCCCTCAGCCCCTTAATCGAGCTGAAGCTCGCAATTAAGCGTTCTAATGCCACCCATCCGGTCTCGAAGTTCAGTCGCCGTGCCACCACTGCCACTGTATCATTCAGCCTCCCGGCTTCGTAGGATACGATTGCCTCTCTTGCTTCACTTGCCGATTCTTTTTCAAGCCCTCATACCTAAAATTTTGTCTTATTTTGCAGGAAACCAGAAGGCGTTTCCCCCGAGAAACTCCCGAAGTAAGTTTACCCACAAATTCCCCCCCTTTCAATTGGTGTCTTTCTGCTGCATAGGTTGACCTTAAGTGGTGTTAATTGGAGTTTTTGTTGCTTGTCTTCATAATGTGTGAATGTTATTTTCTAATTTAACTAATCATTTTGAAATTTAACGAGGGTTGATGATTATTTAGGTTGAACTGTAACTTTAGTCCTTATCAATAAGTTTTGAGACTTCAATTTTAGTTTTAATTTTAAGTGCCTGTCTGGGGGGTTTGGAATTAATTTTAAGGACTGGTTGAAAGGTTACCATTTTGTGCATTTGAAACTATTTGCTGATATGTTGAGCCATAATCTAACGTGGGAGATGTATGACCTCTTACCCGCTGCATGTCATGGAATGACTTCTTATTTCTCTCTTTTTGGCTGTAGGACTTTTTCTTATCTATGTAATTGATTTTCCAGCATGTCAGTATGTCATAGCTGTTGAATCATTTGTTATATGACTTCTCCTTTTCTGTATCAGATTATCAGTTATTGGAGAAATGATAGTGGTGTTAATTGTTTGTTGAATTTGTAATGTATAAGATGGTCAGCAAGAGCAATAAAGTCGTTTGCAATGGCGGAATTGGAAGCTAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGCTAATGGGAATTTTAATTGAGGGTTAGTAGCCTTTCCAACTCTGATGTTATTTCTTATTTACATTTAAATTTAAACTTACATATTGATTTAGTTTAGTAGAATGCAGTTAAATTACAGAACTATATGAATCTTGGTCCATTTTTTTAAAAGTTAATATGCTAAAATCAATAAGAAAAAATCAACATCATCTGATAAAAACTATATGATTCATCTCCTAAGGAGTTAACATTTGATCACTTTCAAAACGTGACTACTTTTTACCACGCCCCTTTCCAGCGCCATTTCATGATATCATCCACTGTTATCTGATGCCTCTCATGTCAAACTATTTATGTTAAGAATTCGACATTGAAGCTTATGTTCATGTCAACTCCTGTCAGCTGATGATTATGAGTAACCTATCTTTGGCAGTAGGCTTGGGGCATTGGTCATATGCTTTTGGAATGTCCTTATGCTTAATTGCTAACAATATACATGGTGAAGTGAATCAACAACTTTCAACCTTCTTCAGAAAAAAGGGGATAGGAATATGATAGGTAGCCTCAATTATATTTATCAACAGCAATGGGGAAGGATTTAAGAGCTCCCCAATCTCTCCTAATTCTCATAAGAGAACCCAAATACAAATTACAGCCAAAAAGATGCCTCAGTCACAATAAACAGCCCCCTAAATGCAGTCCTCTCACTGCCCAATCTAACTAACACCACTTGGGCCCCACCTAAACAGTGTAAATTTACCCCCTCACTGTGTTTGCACGCTTTCCTTCCTTCCTACGTGTATACACCTTAGTAATTGGGGCCTATCACAATAAAAATCAATAAACTAAAGGTGCATATTCCCTTTGATTGCAATCTTGCCATTCCTCAAGCTCAATGCTAGATAATTTTATTTTCCTGAATGTATATATATTCACATTCTTTTCAGGAACAAGTATTGCTGCCAAATTCTTAAGGGTCAATGGAATTACACTTTTCAAAGTAAGAGAAGAAACTGTAAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAACCTGCCCAGAGGGCACTTGATTGGGCTGTTGCGGCAAAGCTAAAGTCAGGTGAGATCATTCTTCCTAATCATGCAGCAAATGCAATTCTTATTTAGCCTGAAAGTGATTGATGATACTTGAGTTTTCTGCCGAACCTCTATGCATGCACTTCTAAGCTCCCACTGTAAAGAATGAGACGTAGGGATGACAAGTTTTTTGACTGCTGGTTGAATAAGATTTTTAGTATTGCCTATTTCTGTGTTCAAACAATGGCCTAATTCGCAGAGGAAAACAAGTGAAGGGAGGTTATGTGTGTTTTTGTCACAGACTCTTTGACAGCTTGGGTGGAAAGGAAGCAAATCAGATTATTCTTCCTTGGCTAGGATAGTGAATAAAGAATTTCTAGATCACGCTTACCGCAACAGAAAAATGAATAAATGATTTTAGAACCACCATATGTTAGTCTAATGGTCAATAATAAAGGGTTTAGAGGGAATGAGTTCAAGCTATGGTGGCTACCTACATATATAGGATTTAATATTTTAGAGTTACTTAGACAACCAAATATAGTAGGGTCAGATAATTGTCTTGTGACAATAGTCGAGGTGCACTAGACACACAAATACATAGAAAAAAAGAGATTATTATGCTCACTGCAATTTAATGGCTGCCACTTTTTTCAAAGGGTTTAGAAGTTGGATTTACTCACTGGCGATGAAGACTTGGTTGTAAAGCATTTATTTTCTCATGTAGCAAGAAACACCCACTTGCATAGACTTTCGCCAACCTTTTTGGCCATCTTAGTGAAGAAGGATTTCAGTACATCTTATTATCTAGTTATTCACAAAGCATGTACAAATGTGCACAAGTATGCATGAACTTCTTGATGGTAGATTTTGACTAGAATCATCATCACCTATTTGCATTTTGTTATGTACTTTTGCTTGAACCTAAGGTCCTGTATGCAGGCCAGTCTGGAGAAATAACTACAGGTCATTTGCTTCTTGGTATCTGGTCAGAGGAATCAGCAGGTCGCAAGATCTTAGCCACCCTTGGCTTCGATGATGAGAAGGCGAAAGAGGTCGAAAAAACCGTAAGTATAAAGTTGTTTTTGTCTAATTAGTAGCACCCTCGGTACTTGATGATATATTCCACTAAAACGTCTTTATTGTTCACAGGTGGACAAGGATGCAACTTTCAGTTATAAGTAGGTGGATCGTGTTGGAAGATGTGATGTGATTTTCATATTTTCGTGGAAGGAATCCTCAGAATGAACCCCCCCAAATGAGATTCATATGATTTGAATCCTCGTGCATCCATTTGGTGATATAGTGATTTGCCTGTTTAATCAGCACCTGCCGTTCAACATAATCAGCTTCACTTTGAATTGACTATTGTTCGAACTTGTGGAGTGCTGGTAATGGTACGGTACATTTCAGTGGTCTCAAACTGCTTGCAGGACATAGTTCTCTTACTGTGGCTTTTCTTGGACAAGCAACCTGAGTTGAAAGGGAATAATAACCCCAATAATTAACACATACCATTCTTAATTTAGTATCTACAAGACATCCTCGATTACTTTTTGATTTTAGTATTTAATATTTTTATCTTTGTTTCCTTAATGCTTCTTAATATATGGGGTCTCGCTTGCCAAGATTCTAACATTCTTTACGTTTTGATTCCTCTCACTAGTTGAAGTTTGTATGTCCAGGTAAATTCTTTTTGTGAATTTATAGATAATTTTGATTTATGTGGTTCAGATTCTAGCCAGTTAAATACAGAACATGCTCTACTTGTTG

mRNA sequence

AACAGACCCTAAGCAGGGCCCAAATCGGGAGAGCAAGAAGCACACGAAACGCCATAGCCATACCCAACCAAACCCATCTTCGTTCTTATTATCAACTCTCTCCGGACCTGCTTTTCAGTCTCCTCCAAAATTGAGCTTTCCTTAGCCTTCTAATGGCGGCTAGCTTGAATTCTCTTTCGCTTTCCCAACTCCCATTCTCCCTTCCAGCACAATCTAATTGTTATTCTTTAGAACACAAAGCTCTATTCCTTCCCCTCAGCCCCTTAATCGAGCTGAAGCTCGCAATTAAGCGTTCTAATGCCACCCATCCGGTCTCGAAGTTCAGTCGCCGTGCCACCACTGCCACTGTATCATTCAGCCTCCCGGCTTCGAAACCAGAAGGCGTTTCCCCCGAGAAACTCCCGAAATGGTCAGCAAGAGCAATAAAGTCGTTTGCAATGGCGGAATTGGAAGCTAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGCTAATGGGAATTTTAATTGAGGGAACAAGTATTGCTGCCAAATTCTTAAGGGTCAATGGAATTACACTTTTCAAAGTAAGAGAAGAAACTGTAAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAACCTGCCCAGAGGGCACTTGATTGGGCTGTTGCGGCAAAGCTAAAGTCAGGCCAGTCTGGAGAAATAACTACAGGTCATTTGCTTCTTGGTATCTGGTCAGAGGAATCAGCAGGTCGCAAGATCTTAGCCACCCTTGGCTTCGATGATGAGAAGGCGAAAGAGGTCGAAAAAACCGTGGACAAGGATGCAACTTTCAGTTATAAGTAGGTGGATCGTGTTGGAAGATGTGATGTGATTTTCATATTTTCGTGGAAGGAATCCTCAGAATGAACCCCCCCAAATGAGATTCATATGATTTGAATCCTCGTGCATCCATTTGGTGATATAGTGATTTGCCTGTTTAATCAGCACCTGCCGTTCAACATAATCAGCTTCACTTTGAATTGACTATTGTTCGAACTTGTGGAGTGCTGGTAATGGTACGGTACATTTCAGTGGTCTCAAACTGCTTGCAGGACATAGTTCTCTTACTGTGGCTTTTCTTGGACAAGCAACCTGAGTTGAAAGGGAATAATAACCCCAATAATTAACACATACCATTCTTAATTTAGTATCTACAAGACATCCTCGATTACTTTTTGATTTTAGTATTTAATATTTTTATCTTTGTTTCCTTAATGCTTCTTAATATATGGGGTCTCGCTTGCCAAGATTCTAACATTCTTTACGTTTTGATTCCTCTCACTAGTTGAAGTTTGTATGTCCAGGTAAATTCTTTTTGTGAATTTATAGATAATTTTGATTTATGTGGTTCAGATTCTAGCCAGTTAAATACAGAACATGCTCTACTTGTTG

Coding sequence (CDS)

ATGGCGGCTAGCTTGAATTCTCTTTCGCTTTCCCAACTCCCATTCTCCCTTCCAGCACAATCTAATTGTTATTCTTTAGAACACAAAGCTCTATTCCTTCCCCTCAGCCCCTTAATCGAGCTGAAGCTCGCAATTAAGCGTTCTAATGCCACCCATCCGGTCTCGAAGTTCAGTCGCCGTGCCACCACTGCCACTGTATCATTCAGCCTCCCGGCTTCGAAACCAGAAGGCGTTTCCCCCGAGAAACTCCCGAAATGGTCAGCAAGAGCAATAAAGTCGTTTGCAATGGCGGAATTGGAAGCTAGGAAACTCAAATATCCAAATACAGGCACAGAAGCTTTGCTAATGGGAATTTTAATTGAGGGAACAAGTATTGCTGCCAAATTCTTAAGGGTCAATGGAATTACACTTTTCAAAGTAAGAGAAGAAACTGTAAAGCTACTTGGAAAATCTGACATGTATTTCTTCAGCCCAGAGCATCCTCCATTGACTGAACCTGCCCAGAGGGCACTTGATTGGGCTGTTGCGGCAAAGCTAAAGTCAGGCCAGTCTGGAGAAATAACTACAGGTCATTTGCTTCTTGGTATCTGGTCAGAGGAATCAGCAGGTCGCAAGATCTTAGCCACCCTTGGCTTCGATGATGAGAAGGCGAAAGAGGTCGAAAAAACCGTGGACAAGGATGCAACTTTCAGTTATAAGTAG

Protein sequence

MAASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRATTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK

Homology

[Close]

BLAST of Lsi05G013040 vs. ExPASy Swiss-Prot
Match: Q93WL3 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT1 PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.0e-61
Identity = 116/176 (65.91%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 59  RRATTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGI 118
           R  T+A+   ++P ++PE  S +K+PKWSARAIKS AM ELEARKLKYP+TGTEA+LMGI
Sbjct: 59  RCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGI 118

Query: 119 LIEGTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAK 178
           L+EGTS  AKFLR NG+TLFKVR+ET+ LLGKSDMYFFSPEHPPLTEPAQ+A+ WA+  K
Sbjct: 119 LVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEK 178

Query: 179 LKSGQSGEITTGHLLLGIWSE-ESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
            KS   GE+TT +LLLG+WS+ +SAGR+IL  LGF+++KAKEVEK++++D   S+K
Sbjct: 179 NKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]

BLAST of Lsi05G013040 vs. ExPASy Swiss-Prot
Match: Q8GW78 (ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT2 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.6e-56
Identity = 128/199 (64.32%), Postives = 146/199 (73.37%), Query Frame = 0


Query: 29  KALFLPLSPLIELKLAIKRSNATHPVSKFS----RRATTATVSFSLPASKPE-GVSPEKL 88
           KAL  P   +++  L++     T PVS       RR   + +S SLP + P+  VS  K 
Sbjct: 38  KALTNPWLGVVDSSLSL-----TSPVSALQTNRPRRIHKSAIS-SLPTANPDLVVSDAKK 97

Query: 89  PKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSIAAKFLRVNGITLFKVREE 148
           PKWS RAIKSFAM ELEARKLKYPNTGTEALLMGILIEGTS  +KFLR N I L+KVREE
Sbjct: 98  PKWSWRAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTSFTSKFLRANKIMLYKVREE 157

Query: 149 TVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKSGQSGEITTGHLLLGIWSE-ESA 208
           TVKLLGK+DMYFFSPEHPPLTE AQRALD A+   LK+G  GE+   H+LLGIWSE ES 
Sbjct: 158 TVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESP 217

Query: 209 GRKILATLGFDDEKAKEVE 222
           G KILATLGF DEK+KE+E
Sbjct: 218 GHKILATLGFTDEKSKELE 230

[Close]

BLAST of Lsi05G013040 vs. ExPASy Swiss-Prot
Match: P46523 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) OS=Brassica napus OX=3708 GN=CLPA PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-11
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 67  SFSLPASK-PEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSI 126
           + ++P  K   GV      +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT I
Sbjct: 25  AMNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGI 84

Query: 127 AAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKSGQSG 186
           AAK L+  GI L   R E  K++G+     F     P T  A+R L+ ++    + G + 
Sbjct: 85  AAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN- 144

Query: 187 EITTGHLLLGIWSE-ESAGRKILATLGFD 214
            I + HLLLG+  E E    ++L  LG D
Sbjct: 145 YIGSEHLLLGLLREGEGVAARVLENLGAD 170

[Close]

BLAST of Lsi05G013040 vs. ExPASy Swiss-Prot
Match: Q7F9I1 (Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC1 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-11
Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 77  GVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSIAAKFLRVNGIT 136
           GV      +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAAK L+  GI 
Sbjct: 82  GVVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGIN 141

Query: 137 LFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKSGQSGEITTGHLLLGI 196
           L   R E  K++G+     F     P T  A+R L+ ++    + G +  I + HLLLG+
Sbjct: 142 LKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGL 201

Query: 197 WSE-ESAGRKILATLGFD 214
             E E    ++L +LG D
Sbjct: 202 LREGEGVAARVLESLGAD 216

[Close]

BLAST of Lsi05G013040 vs. ExPASy Swiss-Prot
Match: Q2QVG9 (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 55/162 (33.95%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 53  PVSKFSRRATTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTE 112
           PV+ F  R+T A+   S    +   V+     +++ +AIK   +A+ EAR+L +   GTE
Sbjct: 62  PVTNF--RSTVASYR-SRRGRRARFVTRSMFERFTEKAIKVIMLAQEEARRLGHNFVGTE 121

Query: 113 ALLMGILIEGTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALD 172
            +L+G++ EGT IAAK L+  GI L   R E  K++G+ +   F     P T  A+R L+
Sbjct: 122 QILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGN--GFVAVEIPFTPRAKRVLE 181

Query: 173 WAVAAKLKSGQSGEITTGHLLLGIWSE-ESAGRKILATLGFD 214
            ++    + G +  I + HLLLG+  E E    ++L +LG D
Sbjct: 182 LSLEEARQLGHN-YIGSEHLLLGLLREGEGVAARVLESLGAD 217

[Close]

BLAST of Lsi05G013040 vs. ExPASy TrEMBL
Match: A0A5D3E3F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00010 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.2e-113
Identity = 216/232 (93.10%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A  LNSLS SQLP SLP+QSNCYSLEHK L  PL+PLIELKLAIKRSNATHPVSKF+RRA
Sbjct: 3   ATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           T ATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GTS AAKFLR NGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVA KLKS
Sbjct: 123 GTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKE+ KTVDKDATFSYK
Sbjct: 183 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. ExPASy TrEMBL
Match: A0A1S3AY13 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103484006 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-112
Identity = 215/232 (92.67%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A  LNSLS SQLP SLP+QSNCYSLEHK L  PL+PLIELKLAIKRSNATHPVSKF+RRA
Sbjct: 3   ATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           T ATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GTS AAKFLR NGITLFKVREETVKLLGKSDMYFFS EHPPLTEPAQRALDWAVA KLKS
Sbjct: 123 GTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSSEHPPLTEPAQRALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKE+ KTVDKDATFSYK
Sbjct: 183 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. ExPASy TrEMBL
Match: A0A6J1CI79 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011733 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.8e-112
Identity = 212/232 (91.38%), Postives = 222/232 (95.69%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A  LNSLSLSQ+PFSL  QSNCY+LEHK LFLP+SPL ELKLAIKRSN TH VSKF+RRA
Sbjct: 3   ATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           TTATVSFSLPA+KPEGVSP+KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GTSIAA+FLR NGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVA KLKS
Sbjct: 123 GTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           G+SGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKE+EK+VDKDATFSYK
Sbjct: 183 GESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. ExPASy TrEMBL
Match: A0A6J1E4F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430678 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.9e-109
Identity = 209/232 (90.09%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A  +NSLSLS +P SLPAQSNCYSLE K LFLP+SPLI+L LAIKRSNATH VSKF+RRA
Sbjct: 3   ATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           TTATVSFSLPASKPEGVSP+KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GT+IAA+FLR NGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQRALDWAVA KLKS
Sbjct: 123 GTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           GQSGEITTGHLLL IWSEESAGRKILATLGFD EKAKE+EKTVD DATFSYK
Sbjct: 183 GQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. ExPASy TrEMBL
Match: A0A0A0L8F6 (Clp R domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G177380 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.2e-108
Identity = 208/232 (89.66%), Postives = 214/232 (92.24%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A   NSLS S LP SLP+QSNC+SLEHK    PLSPLI+LKLAIKRSNATHPV KFSRRA
Sbjct: 3   ATRFNSLSFSPLPLSLPSQSNCHSLEHKPPLFPLSPLIQLKLAIKRSNATHPVLKFSRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           TTATVSFSLPASKPEGV PEKLPKWSARAIKSFAM ELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TTATVSFSLPASKPEGVPPEKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GTS AAKFLR NGITLFKVREETVKLLGK+DMYF SPEHPPLTEPAQ+ALDWAVA KLKS
Sbjct: 123 GTSTAAKFLRANGITLFKVREETVKLLGKADMYFCSPEHPPLTEPAQKALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKE+ KTVDKDATFSYK
Sbjct: 183 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. NCBI nr
Match: XP_038877997.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 429.5 bits (1103), Expect = 1.9e-116
Identity = 222/233 (95.28%), Postives = 225/233 (96.57%), Query Frame = 0


Query: 1   MAASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRR 60
           MAAS+NSLSLSQLPFSLPAQSNCYS EHKALFLP SPLIELKLAIKRSN THP SKFSRR
Sbjct: 1   MAASMNSLSLSQLPFSLPAQSNCYSSEHKALFLPPSPLIELKLAIKRSNPTHPASKFSRR 60

Query: 61  ATTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILI 120
           ATTATVSFSLPASKPEGVSPEK+PKWSARAIKSF MAELEARKLKYPNTGTEALLMGILI
Sbjct: 61  ATTATVSFSLPASKPEGVSPEKIPKWSARAIKSFTMAELEARKLKYPNTGTEALLMGILI 120

Query: 121 EGTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLK 180
           EGTS AAKFLR NGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVA KLK
Sbjct: 121 EGTSNAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAKKLK 180

Query: 181 SGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           SGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKE+EKTVDKDATFSYK
Sbjct: 181 SGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKTVDKDATFSYK 233

[Close]

BLAST of Lsi05G013040 vs. NCBI nr
Match: KAA0033572.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa] >TYK30329.1 ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa])

HSP 1 Score: 419.1 bits (1076), Expect = 2.5e-113
Identity = 216/232 (93.10%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A  LNSLS SQLP SLP+QSNCYSLEHK L  PL+PLIELKLAIKRSNATHPVSKF+RRA
Sbjct: 3   ATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           T ATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GTS AAKFLR NGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVA KLKS
Sbjct: 123 GTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKE+ KTVDKDATFSYK
Sbjct: 183 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. NCBI nr
Match: XP_008439115.1 (PREDICTED: ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 416.0 bits (1068), Expect = 2.1e-112
Identity = 215/232 (92.67%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A  LNSLS SQLP SLP+QSNCYSLEHK L  PL+PLIELKLAIKRSNATHPVSKF+RRA
Sbjct: 3   ATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           T ATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GTS AAKFLR NGITLFKVREETVKLLGKSDMYFFS EHPPLTEPAQRALDWAVA KLKS
Sbjct: 123 GTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSSEHPPLTEPAQRALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKE+ KTVDKDATFSYK
Sbjct: 183 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. NCBI nr
Match: XP_022141304.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 415.2 bits (1066), Expect = 3.6e-112
Identity = 212/232 (91.38%), Postives = 222/232 (95.69%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A  LNSLSLSQ+PFSL  QSNCY+LEHK LFLP+SPL ELKLAIKRSN TH VSKF+RRA
Sbjct: 3   ATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           TTATVSFSLPA+KPEGVSP+KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GTSIAA+FLR NGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVA KLKS
Sbjct: 123 GTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           G+SGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKE+EK+VDKDATFSYK
Sbjct: 183 GESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. NCBI nr
Match: KAG6576777.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014811.1 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 408.3 bits (1048), Expect = 4.5e-110
Identity = 211/232 (90.95%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 2   AASLNSLSLSQLPFSLPAQSNCYSLEHKALFLPLSPLIELKLAIKRSNATHPVSKFSRRA 61
           A  +NSLSLS +PFSLPAQSNCYSLE K LFLP SPLI+L LAIKRSNATH VSKF+RRA
Sbjct: 3   ATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTRRA 62

Query: 62  TTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 121
           TTATVSFSLPASKPEGVSP+KLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE
Sbjct: 63  TTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIE 122

Query: 122 GTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKS 181
           GT+IAA+FLR NGITLFKVREETVKLLGKSDMYFFSPEHPPLTE AQRALDWAVA KLKS
Sbjct: 123 GTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKLKS 182

Query: 182 GQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
           GQSGEITTGHLLL IWSEESAGRKILATLGFDDEKAKE+EKTVD DATFSYK
Sbjct: 183 GQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Lsi05G013040 vs. TAIR 10
Match: AT4G25370.1 (Double Clp-N motif protein )

HSP 1 Score: 236.1 bits (601), Expect = 2.8e-62
Identity = 116/176 (65.91%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 59  RRATTATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGI 118
           R  T+A+   ++P ++PE  S +K+PKWSARAIKS AM ELEARKLKYP+TGTEA+LMGI
Sbjct: 59  RCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGI 118

Query: 119 LIEGTSIAAKFLRVNGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAK 178
           L+EGTS  AKFLR NG+TLFKVR+ET+ LLGKSDMYFFSPEHPPLTEPAQ+A+ WA+  K
Sbjct: 119 LVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEK 178

Query: 179 LKSGQSGEITTGHLLLGIWSE-ESAGRKILATLGFDDEKAKEVEKTVDKDATFSYK 234
            KS   GE+TT +LLLG+WS+ +SAGR+IL  LGF+++KAKEVEK++++D   S+K
Sbjct: 179 NKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]

BLAST of Lsi05G013040 vs. TAIR 10
Match: AT4G12060.1 (Double Clp-N motif protein )

HSP 1 Score: 218.8 bits (556), Expect = 4.7e-57
Identity = 128/199 (64.32%), Postives = 146/199 (73.37%), Query Frame = 0


Query: 29  KALFLPLSPLIELKLAIKRSNATHPVSKFS----RRATTATVSFSLPASKPE-GVSPEKL 88
           KAL  P   +++  L++     T PVS       RR   + +S SLP + P+  VS  K 
Sbjct: 38  KALTNPWLGVVDSSLSL-----TSPVSALQTNRPRRIHKSAIS-SLPTANPDLVVSDAKK 97

Query: 89  PKWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSIAAKFLRVNGITLFKVREE 148
           PKWS RAIKSFAM ELEARKLKYPNTGTEALLMGILIEGTS  +KFLR N I L+KVREE
Sbjct: 98  PKWSWRAIKSFAMGELEARKLKYPNTGTEALLMGILIEGTSFTSKFLRANKIMLYKVREE 157

Query: 149 TVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKSGQSGEITTGHLLLGIWSE-ESA 208
           TVKLLGK+DMYFFSPEHPPLTE AQRALD A+   LK+G  GE+   H+LLGIWSE ES 
Sbjct: 158 TVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQNLKAGGIGEVMPAHILLGIWSEVESP 217

Query: 209 GRKILATLGFDDEKAKEVE 222
           G KILATLGF DEK+KE+E
Sbjct: 218 GHKILATLGFTDEKSKELE 230

[Close]

BLAST of Lsi05G013040 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-12
Identity = 47/130 (36.15%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 85  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSIAAKFLRVNGITLFKVREET 144
           +++ +AIK   +A+ EAR+L +   GTE +L+G++ EGT IAAK L+  GI L   R E 
Sbjct: 97  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156

Query: 145 VKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKSGQSGEITTGHLLLGIWSE-ESAG 204
            K++G+     F     P T  A+R L+ ++    + G +  I + HLLLG+  E E   
Sbjct: 157 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 216

Query: 205 RKILATLGFD 214
            ++L  LG D
Sbjct: 217 ARVLENLGAD 223

[Close]

BLAST of Lsi05G013040 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-12
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 85  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSIAAKFLRVNGITLFKVREET 144
           +++ +AIK   +++ EAR+L +   GTE +L+G++ EGT IAAK L+  GI L   R E 
Sbjct: 117 RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 176

Query: 145 VKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKSGQSGEITTGHLLLGIWSE-ESAG 204
            K++G+     F     P T  A+R L+ ++    + G +  I + HLLLG+  E E   
Sbjct: 177 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 236

Query: 205 RKILATLGFD 214
            ++L  LG D
Sbjct: 237 ARVLENLGAD 243

[Close]

BLAST of Lsi05G013040 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-12
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 85  KWSARAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSIAAKFLRVNGITLFKVREET 144
           +++ +AIK   +++ EAR+L +   GTE +L+G++ EGT IAAK L+  GI L   R E 
Sbjct: 86  RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 145

Query: 145 VKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAAKLKSGQSGEITTGHLLLGIWSE-ESAG 204
            K++G+     F     P T  A+R L+ ++    + G +  I + HLLLG+  E E   
Sbjct: 146 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 205

Query: 205 RKILATLGFD 214
            ++L  LG D
Sbjct: 206 ARVLENLGAD 212

The following BLAST results are available for this feature:

BLAST of Lsi05G013040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WL3	4.0e-61	65.91	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidops...	[more]
Q8GW78	6.6e-56	64.32	ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidops...	[more]
P46523	1.3e-11	34.23	ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Frag...	[more]
Q7F9I1	1.3e-11	35.51	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q2QVG9	1.7e-11	33.95	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Lsi05G013040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3F8	1.2e-113	93.10	ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa...	[more]
A0A1S3AY13	1.0e-112	92.67	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1CI79	1.8e-112	91.38	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momo...	[more]
A0A6J1E4F8	6.9e-109	90.09	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A0A0L8F6	1.2e-108	89.66	Clp R domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G177380 PE=4 ...	[more]

BLAST of Lsi05G013040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877997.1	1.9e-116	95.28	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Beninc...	[more]
KAA0033572.1	2.5e-113	93.10	ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa] ...	[more]
XP_008439115.1	2.1e-112	92.67	PREDICTED: ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-l...	[more]
XP_022141304.1	3.6e-112	91.38	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momord...	[more]
KAG6576777.1	4.5e-110	90.95	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu...	[more]

BLAST of Lsi05G013040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25370.1	2.8e-62	65.91	Double Clp-N motif protein	[more]
AT4G12060.1	4.7e-57	64.32	Double Clp-N motif protein	[more]
AT5G50920.1	2.1e-12	36.15	CLPC homologue 1	[more]
AT3G48870.1	7.8e-12	35.38	Clp ATPase	[more]
AT3G48870.2	7.8e-12	35.38	Clp ATPase	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004176	Clp, repeat (R) domain	PFAM	PF02861	Clp_N	coord: 184..222 e-value: 4.8E-7 score: 29.8 coord: 97..149 e-value: 6.4E-9 score: 35.8
IPR004176	Clp, repeat (R) domain	PROSITE	PS51903	CLP_R	coord: 83..227 score: 29.837454
IPR036628	Clp, N-terminal domain superfamily	GENE3D	1.10.1780.10		coord: 85..231 e-value: 3.6E-42 score: 145.8
IPR036628	Clp, N-terminal domain superfamily	SUPERFAMILY	81923	Double Clp-N motif	coord: 85..217
None	No IPR available	PANTHER	PTHR47016:SF1	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 15..233
IPR044217	ATP-dependent Clp protease ATP-binding subunit CLPT1/2	PANTHER	PTHR47016	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 15..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G013040.1	Lsi05G013040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009532	plastid stroma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008233	peptidase activity