Lsi05G012950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G012950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	embryo-specific protein ATS3B-like
Location	chr05: 20728538 .. 20729897 (-)
RNA-Seq Expression	Lsi05G012950
Synteny	Lsi05G012950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACAAGCTGTTCGTCGCCTTCATACACAAGGGATCAGATCAGTCTTTCATTCGGTGATGCTTATGGAAACCAGGTTTTCTTCGTTTAAATCTTCATTTCCCCACTGATTTTATCGCAGTAGAAAGCCCTTGGTTTCTCGATCGTTCACGATTTAATTAATTTCAGATATTCGAAATGGTTGATGAAATAAATCGGAGTTGAATTTCGCATCTGAGTTTCGGAAAATTTTCCATTTGATTAGGGATATAACGCATAGGCATATTAATATCTTAGGTTAAAGTAATAGATTGGTGTTATCCTTTATCTTTTCGATACAAAATGAAATAGAAATATAGTCGGTTTAATTTCTTGAATCTCGATTATGATGGGTTGATAGCTTGTTGATTTATATGTTTCAGAACTTCAATACAGGTATGCATTTATTGGTAAATTAACATATCTTAGAAAACATCCATAGTCATTGGCCAGTTGAGTAATATCTTATAGCCCATTGACATGTATAGAACTTCCTAAAACATTATAGGTCTTTCGATACATCAGCAGTTCACAATGTTGAAATACAAGAATTTGAAAGAACACCATAAGTTGTCTTTACTTTCAGATAAATTTGGGAATTTAACATGTTACAATTAATCATTGAAGGAGTTTGTTTTGTATAATGAGTGATGAGTTTTGATTTGTGTACCAGGTTTATGTACCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTTCTGATACATTTGGCATAAATGGACCTTGTGCTTACCAAATATGTTATGTCTATCTTTATCGCTCTGGACCGGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCCTCGTCTTCAAACCGTAGTTCAAGTTGCATAGGGTTCTTATATGTCATTTTAGTGTCTATTCTTCTACTTCTCTTGTAATTTTGTGCTATGTCAGGATGCTGTTCATGTTCTATCCTTGATAAGAATACATTTTGATATTAAAGGGCACGGATATCTAACTATAAAGCAGCATCGAGATTGTACTTTTGTAGATTTAATACAACAGGCAGAGGGAGTTCTTGGTGATTGAGTCTCTTGACTTGGGATAAGCTTTTGAATATCTTATTATGGAATTGGGAAATAGAGAAATTTCTGGTTTTGTATATTCTTTGATATGTTGGCCTTCTGATTCAGGTGGGACTCTTCCTTTGTTAGCTTTATCCTATAAAACTTTGTTATGTCA

mRNA sequence

ATGTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACAAGCTGTTCGTCGCCTTCATACACAAGGGATCAGATCAGTCTTTCATTCGGTGATGCTTATGGAAACCAGGTTTATGTACCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTTCTGATACATTTGGCATAAATGGACCTTGTGCTTACCAAATATGTTATGTCTATCTTTATCGCTCTGGACCGGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCCTCGTCTTCAAACCGTAGTTCAAGTTGCATAGGGTTCTTATATGTCATTTTAGTGTCTATTCTTCTACTTCTCTTGTAATTTTGTGCTATGTCAGGATGCTGTTCATGTTCTATCCTTGATAAGAATACATTTTGATATTAAAGGGCACGGATATCTAACTATAAAGCAGCATCGAGATTGTACTTTTGTAGATTTAATACAACAGGCAGAGGGAGTTCTTGGTGATTGAGTCTCTTGACTTGGGATAAGCTTTTGAATATCTTATTATGGAATTGGGAAATAGAGAAATTTCTGGTTTTGTATATTCTTTGATATGTTGGCCTTCTGATTCAGGTGGGACTCTTCCTTTGTTAGCTTTATCCTATAAAACTTTGTTATGTCA

Coding sequence (CDS)

ATGTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACAAGCTGTTCGTCGCCTTCATACACAAGGGATCAGATCAGTCTTTCATTCGGTGATGCTTATGGAAACCAGGTTTATGTACCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTTCTGATACATTTGGCATAAATGGACCTTGTGCTTACCAAATATGTTATGTCTATCTTTATCGCTCTGGACCGGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGATGTATGGTTCGGGTTTAACTTGTGTGGTCATGCCTCGTCTTCAAACCGTAGTTCAAGTTGCATAGGGTTCTTATATGTCATTTTAGTGTCTATTCTTCTACTTCTCTTGTAA

Protein sequence

MLKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

Homology

[Close]

BLAST of Lsi05G012950 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.2e-48
Identity = 93/151 (61.59%), Postives = 112/151 (74.17%), Query Frame = 0


Query: 1   MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSD 60
           ++++LG +C+Y+V+ISTSCSS  YTRDQIS++FGD YGNQ+Y PRLDDPS + FE+CSSD
Sbjct: 40  LIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSD 99

Query: 61  TFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCG 120
           TF INGPC YQICYVYLYRSGPD WIP TVKI    S+ VTF YNT +P  VW+GFN C 
Sbjct: 100 TFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 159

Query: 121 HASSSN------RSSSCIGFLYVILVSILLL 145
            AS SN      R S  I   +V+  + LLL
Sbjct: 160 SASDSNVLAIGLRRSVIILLGFVVAGTTLLL 190

[Close]

BLAST of Lsi05G012950 vs. ExPASy Swiss-Prot
Match: Q681K2 (Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.9e-41
Identity = 74/126 (58.73%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           L+   +CSY+V+I TSCSS SYTRD+IS+SFGD YGN+VYV RLDDPS R FE+CSSDT+
Sbjct: 42  LENAAACSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTY 101

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
            I+GPC   +CY+YL R G D W P  VKI G   R VTF YN  +PN VW+GFN+C   
Sbjct: 102 KISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCNGI 161

Query: 122 SSSNRS 128
            ++  S
Sbjct: 162 GNTKSS 167

[Close]

BLAST of Lsi05G012950 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-24
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 4   QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTF 63
           Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF
Sbjct: 30  QQGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTF 89

Query: 64  GINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPN-DVWFGFNLCG 123
            + G C    IC +Y+ R+GPD W+P +++I  + S+ V F+++ ++P  + W+G N C 
Sbjct: 90  QVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNC- 149

Query: 124 HASSSNRSSS 130
             +++ R SS
Sbjct: 150 --NTTGRPSS 156

[Close]

BLAST of Lsi05G012950 vs. ExPASy TrEMBL
Match: A0A0A0L5P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177980 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 130/145 (89.66%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTF
Sbjct: 38  IQQLGSCSYSVVISTSCLSPAYTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTF 97

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
           GINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTFNYNTAIP DVWFGFNLCGH 
Sbjct: 98  GINGPCAYQICYVYLYRTGPDAWIPTTVRISGDNSRPVTFNYNTAIPGDVWFGFNLCGHP 157

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSCIG+ YVI+VSI+LLLL
Sbjct: 158 SSSNRISSCIGWFYVIIVSIILLLL 182

[Close]

BLAST of Lsi05G012950 vs. ExPASy TrEMBL
Match: A0A6J1J591 (embryo-specific protein ATS3B-like OS=Cucurbita maxima OX=3661 GN=LOC111482748 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.0e-70
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF
Sbjct: 36  IQQLGSCSYSVVISTSCSSPTYTRDQISVSFGDAYGNQIYVPRIDDPSRRIFERCSSDTF 95

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
            ++GPCAYQ+CYVYLYRSGPDAWIPTTVKISG +SRPVTFNYNTAIPNDVWFGFNLCGHA
Sbjct: 96  SVSGPCAYQLCYVYLYRSGPDAWIPTTVKISGPNSRPVTFNYNTAIPNDVWFGFNLCGHA 155

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSCI FLYV  VSILLL L
Sbjct: 156 SSSNRISSCIWFLYVSFVSILLLFL 180

[Close]

BLAST of Lsi05G012950 vs. ExPASy TrEMBL
Match: A0A6J1E5K7 (embryo-specific protein ATS3B-like OS=Cucurbita moschata OX=3662 GN=LOC111430911 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.2e-70
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF
Sbjct: 36  IQQLGSCSYSVVISTSCSSPTYTRDQISVSFGDAYGNQIYVPRIDDPSRRIFERCSSDTF 95

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
            ++GPCAYQICYVYLYR+GPDAWIPTTVKISG +SRPVTFNYNTAIPNDVWFGFNLCGHA
Sbjct: 96  SVSGPCAYQICYVYLYRTGPDAWIPTTVKISGPNSRPVTFNYNTAIPNDVWFGFNLCGHA 155

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSCI FLYV  VSILLL L
Sbjct: 156 SSSNRISSCIWFLYVSFVSILLLFL 180

[Close]

BLAST of Lsi05G012950 vs. ExPASy TrEMBL
Match: A0A1S3AXZ5 (uncharacterized protein LOC103484016 OS=Cucumis melo OX=3656 GN=LOC103484016 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 129/145 (88.97%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTF
Sbjct: 38  IQQLGSCSYSVVISTSCLSPTYTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTF 97

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
           GINGPCAYQICYVYLYR+GPDAWIPTTV ISG +SRPVTFNYNTAIP+DVWFGFNLCGH 
Sbjct: 98  GINGPCAYQICYVYLYRTGPDAWIPTTVTISGHNSRPVTFNYNTAIPSDVWFGFNLCGHP 157

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSN  S CIG  YVILVSILLLLL
Sbjct: 158 SSSNHISGCIGCFYVILVSILLLLL 182

[Close]

BLAST of Lsi05G012950 vs. ExPASy TrEMBL
Match: A0A6J1CHB0 (embryo-specific protein ATS3B-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011502 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.5e-69
Identity = 127/145 (87.59%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++Q GSCSYSVVISTSCSSPSYTRD ISLSFGDAYGNQ+YVPR+DDPSRR FERCS+DTF
Sbjct: 38  IQQAGSCSYSVVISTSCSSPSYTRDHISLSFGDAYGNQIYVPRIDDPSRRTFERCSTDTF 97

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
            INGPCAYQICYVYLYRSGPDAWIPTTVKISGD+SRP+TFNYNTAIPNDVWFGFNLCGHA
Sbjct: 98  HINGPCAYQICYVYLYRSGPDAWIPTTVKISGDNSRPITFNYNTAIPNDVWFGFNLCGHA 157

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSC+ F+YVI V IL LLL
Sbjct: 158 SSSNRLSSCMWFIYVIGVWILALLL 182

[Close]

BLAST of Lsi05G012950 vs. NCBI nr
Match: XP_038877434.1 (embryo-specific protein ATS3B-like [Benincasa hispida])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 134/145 (92.41%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSCSSP++TRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTF
Sbjct: 36  IQQLGSCSYSVVISTSCSSPTFTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTF 95

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
           GINGPCAYQICYVYLYRSGPDAWIPTTVKISG +SRPVTFNYNTAIPNDVWFGFNLCGH 
Sbjct: 96  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGGNSRPVTFNYNTAIPNDVWFGFNLCGHP 155

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSC+ FLYVILVSILLLLL
Sbjct: 156 SSSNRCSSCVRFLYVILVSILLLLL 180

[Close]

BLAST of Lsi05G012950 vs. NCBI nr
Match: KAE8650438.1 (hypothetical protein Csa_009650 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-71
Identity = 130/145 (89.66%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTF
Sbjct: 218 IQQLGSCSYSVVISTSCLSPAYTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTF 277

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
           GINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTFNYNTAIP DVWFGFNLCGH 
Sbjct: 278 GINGPCAYQICYVYLYRTGPDAWIPTTVRISGDNSRPVTFNYNTAIPGDVWFGFNLCGHP 337

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSCIG+ YVI+VSI+LLLL
Sbjct: 338 SSSNRISSCIGWFYVIIVSIILLLL 362

[Close]

BLAST of Lsi05G012950 vs. NCBI nr
Match: XP_004148122.1 (embryo-specific protein ATS3B [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-71
Identity = 130/145 (89.66%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTF
Sbjct: 38  IQQLGSCSYSVVISTSCLSPAYTRDQISLSFGDAYGNQIYVPRLDDPSRRIFERCSSDTF 97

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
           GINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTFNYNTAIP DVWFGFNLCGH 
Sbjct: 98  GINGPCAYQICYVYLYRTGPDAWIPTTVRISGDNSRPVTFNYNTAIPGDVWFGFNLCGHP 157

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSCIG+ YVI+VSI+LLLL
Sbjct: 158 SSSNRISSCIGWFYVIIVSIILLLL 182

[Close]

BLAST of Lsi05G012950 vs. NCBI nr
Match: XP_022984446.1 (embryo-specific protein ATS3B-like [Cucurbita maxima])

HSP 1 Score: 273.9 bits (699), Expect = 8.2e-70
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF
Sbjct: 36  IQQLGSCSYSVVISTSCSSPTYTRDQISVSFGDAYGNQIYVPRIDDPSRRIFERCSSDTF 95

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
            ++GPCAYQ+CYVYLYRSGPDAWIPTTVKISG +SRPVTFNYNTAIPNDVWFGFNLCGHA
Sbjct: 96  SVSGPCAYQLCYVYLYRSGPDAWIPTTVKISGPNSRPVTFNYNTAIPNDVWFGFNLCGHA 155

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSCI FLYV  VSILLL L
Sbjct: 156 SSSNRISSCIWFLYVSFVSILLLFL 180

[Close]

BLAST of Lsi05G012950 vs. NCBI nr
Match: XP_022923164.1 (embryo-specific protein ATS3B-like [Cucurbita moschata])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 128/145 (88.28%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF
Sbjct: 36  IQQLGSCSYSVVISTSCSSPTYTRDQISVSFGDAYGNQIYVPRIDDPSRRIFERCSSDTF 95

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
            ++GPCAYQICYVYLYR+GPDAWIPTTVKISG +SRPVTFNYNTAIPNDVWFGFNLCGHA
Sbjct: 96  SVSGPCAYQICYVYLYRTGPDAWIPTTVKISGPNSRPVTFNYNTAIPNDVWFGFNLCGHA 155

Query: 122 SSSNRSSSCIGFLYVILVSILLLLL 147
           SSSNR SSCI FLYV  VSILLL L
Sbjct: 156 SSSNRISSCIWFLYVSFVSILLLFL 180

[Close]

BLAST of Lsi05G012950 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-49
Identity = 93/151 (61.59%), Postives = 112/151 (74.17%), Query Frame = 0


Query: 1   MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSD 60
           ++++LG +C+Y+V+ISTSCSS  YTRDQIS++FGD YGNQ+Y PRLDDPS + FE+CSSD
Sbjct: 40  LIQKLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPSTKTFEQCSSD 99

Query: 61  TFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCG 120
           TF INGPC YQICYVYLYRSGPD WIP TVKI    S+ VTF YNT +P  VW+GFN C 
Sbjct: 100 TFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVTFPYNTYVPESVWYGFNYCN 159

Query: 121 HASSSN------RSSSCIGFLYVILVSILLL 145
            AS SN      R S  I   +V+  + LLL
Sbjct: 160 SASDSNVLAIGLRRSVIILLGFVVAGTTLLL 190

[Close]

BLAST of Lsi05G012950 vs. TAIR 10
Match: AT2G41475.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-42
Identity = 74/126 (58.73%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 2   LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTF 61
           L+   +CSY+V+I TSCSS SYTRD+IS+SFGD YGN+VYV RLDDPS R FE+CSSDT+
Sbjct: 42  LENAAACSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKRLDDPSSRTFEKCSSDTY 101

Query: 62  GINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGHA 121
            I+GPC   +CY+YL R G D W P  VKI G   R VTF YN  +PN VW+GFN+C   
Sbjct: 102 KISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRSVTFYYNLFLPNSVWYGFNVCNGI 161

Query: 122 SSSNRS 128
            ++  S
Sbjct: 162 GNTKSS 167

[Close]

BLAST of Lsi05G012950 vs. TAIR 10
Match: AT5G62210.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 131.0 bits (328), Expect = 8.0e-31
Identity = 57/116 (49.14%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 7   SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDP--SRRIFERCSSDTFGIN 66
           SC Y+V+++TSC SP ++RDQ++++ GDA  NQV  PRLD P      FE+CSSDTF + 
Sbjct: 39  SCPYTVIVTTSCFSPDWSRDQVTIALGDADDNQVVAPRLDKPLSGGGGFEKCSSDTFQVK 98

Query: 67  GPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPNDVWFGFNLCGH 121
           G C   IC VY+YRSG D WIP TV+I  + S+ V F++N  +P ++W+G N C +
Sbjct: 99  GKCLNTICSVYIYRSGTDGWIPETVEIYKEGSKSVKFDFNKNVPENIWYGNNYCNN 154

[Close]

BLAST of Lsi05G012950 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-25
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 4   QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTF 63
           Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF
Sbjct: 30  QQGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTF 89

Query: 64  GINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPN-DVWFGFNLCG 123
            + G C    IC +Y+ R+GPD W+P +++I  + S+ V F+++ ++P  + W+G N C 
Sbjct: 90  QVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNC- 149

Query: 124 HASSSNRSSS 130
             +++ R SS
Sbjct: 150 --NTTGRPSS 156

[Close]

BLAST of Lsi05G012950 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-25
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 4   QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTF 63
           Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF
Sbjct: 2   QQGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGGLVRGPGGLGKCSTNTF 61

Query: 64  GINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPN-DVWFGFNLCG 123
            + G C    IC +Y+ R+GPD W+P +++I  + S+ V F+++ ++P  + W+G N C 
Sbjct: 62  QVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKSVKFDFSKSVPQLNTWYGHNNC- 121

Query: 124 HASSSNRSSS 130
             +++ R SS
Sbjct: 122 --NTTGRPSS 128

The following BLAST results are available for this feature:

BLAST of Lsi05G012950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPM5	3.2e-48	61.59	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q681K2	2.9e-41	58.73	Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1	[more]
Q9LYP6	4.2e-24	42.31	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of Lsi05G012950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P4	1.6e-71	89.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177980 PE=4 SV=1	[more]
A0A6J1J591	4.0e-70	88.28	embryo-specific protein ATS3B-like OS=Cucurbita maxima OX=3661 GN=LOC111482748 P...	[more]
A0A6J1E5K7	5.2e-70	88.28	embryo-specific protein ATS3B-like OS=Cucurbita moschata OX=3662 GN=LOC111430911...	[more]
A0A1S3AXZ5	1.5e-69	88.97	uncharacterized protein LOC103484016 OS=Cucumis melo OX=3656 GN=LOC103484016 PE=...	[more]
A0A6J1CHB0	7.5e-69	87.59	embryo-specific protein ATS3B-like isoform X3 OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Lsi05G012950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877434.1	1.4e-72	92.41	embryo-specific protein ATS3B-like [Benincasa hispida]	[more]
KAE8650438.1	3.3e-71	89.66	hypothetical protein Csa_009650 [Cucumis sativus]	[more]
XP_004148122.1	3.3e-71	89.66	embryo-specific protein ATS3B [Cucumis sativus]	[more]
XP_022984446.1	8.2e-70	88.28	embryo-specific protein ATS3B-like [Cucurbita maxima]	[more]
XP_022923164.1	1.1e-69	88.28	embryo-specific protein ATS3B-like [Cucurbita moschata]	[more]

BLAST of Lsi05G012950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62200.1	2.2e-49	61.59	Embryo-specific protein 3, (ATS3)	[more]
AT2G41475.1	2.0e-42	58.73	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	8.0e-31	49.14	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	3.0e-25	42.31	seed gene 3	[more]
AT5G07190.2	3.0e-25	42.31	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.60.20	PLAT/LH2 domain	coord: 7..113 e-value: 8.1E-6 score: 27.8
None	No IPR available	PANTHER	PTHR31718:SF32	EMBRYO-SPECIFIC PROTEIN ATS3B	coord: 4..144
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 4..144
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..18 score: 5.0
None	No IPR available	CDD	cd00113	PLAT	coord: 8..118 e-value: 6.09725E-27 score: 95.4836
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 3..118 e-value: 5.2E-51 score: 171.8
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 4..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G012950.1	Lsi05G012950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity