Lsi05G012430 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G012430
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	C5a peptidase
Location	chr05: 20244811 .. 20245512 (+)
RNA-Seq Expression	Lsi05G012430
Synteny	Lsi05G012430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATCGGACGTGCAATTCAGTGAAACAGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAATCGCAACCCTCGCCGCCGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCAGAAGGACACAAATAACCATGCCACCTCCGGTCAGTTTAGTCTTACATTTTTTTTTTTAATTTTAAAAAACGCATTATTGGGGTTAATAATAGGATTAAGGTTGGAGTGATTTTTGCTTAGAAAAACGCATTATTTTTCGTATTTTTGGGTTTTTTTTTTTTTTTTAATTTTTTAATTTATAATTTGACTAAAAAGGACCAACCAAACAGCGCCTACAAAATACGATAAAAGTGGGAATAGTGAATATTCCTTACGAAGATATTTATGTGTGATTTAGATATCACAATAAAAATCACTTTCCTTTCACTCCAAAAAGATCATTAATATTCTTTCCTTTCTGCTTGCTTGCATTTTTATTTTTATTATTATTGTTATTATTTATTACCTTTTAATTTCTTTTGGCTGTGATCTAGGCGGTGCCAGAATCAACGGTAGATCTACCAGGAGATCAAGGAGGATATCATCTCCACCGCACACTTCAACTCAAGATCAGGCTAGTGCAGAAACCATATAA

mRNA sequence

ATGGAAGAATCGGACGTGCAATTCAGTGAAACAGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAATCGCAACCCTCGCCGCCGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCAGAAGGACACAAATAACCATGCCACCTCCGGCGGTGCCAGAATCAACGGTAGATCTACCAGGAGATCAAGGAGGATATCATCTCCACCGCACACTTCAACTCAAGATCAGGCTAGTGCAGAAACCATATAA

Coding sequence (CDS)

ATGGAAGAATCGGACGTGCAATTCAGTGAAACAGGGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAATCGCAACCCTCGCCGCCGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCAGAAGGACACAAATAACCATGCCACCTCCGGCGGTGCCAGAATCAACGGTAGATCTACCAGGAGATCAAGGAGGATATCATCTCCACCGCACACTTCAACTCAAGATCAGGCTAGTGCAGAAACCATATAA

Protein sequence

MEESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSPQKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQASAETI

Homology

[Close]

BLAST of Lsi05G012430 vs. ExPASy TrEMBL
Match: A0A0A0L5V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSP 62
           ES VQF++TGP WTNEKHMHFLNS+EASFVRSMF+NR  RR LRLDR LPDTADSTLDSP
Sbjct: 2   ESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDSP 61

Query: 63  QKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
              T NH TSG ARINGRSTRRSRRISSPP+TSTQDQ
Sbjct: 62  HNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98

[Close]

BLAST of Lsi05G012430 vs. ExPASy TrEMBL
Match: A0A1S3AYV4 (uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.3e-34
Identity = 79/97 (81.44%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSP 62
           ES VQF++TGP WTNEKHMHFLNSMEASFVRSMF+NR  RRRLRLDR LPDTADSTLDSP
Sbjct: 2   ESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDSP 61

Query: 63  QKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
              T NH TSG AR+NGRSTRRSRR SSPP++STQDQ
Sbjct: 62  LNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQ 98

[Close]

BLAST of Lsi05G012430 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.7e-33
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSP 62
           ES VQFSET PFWTNEKHMHFLNSMEASFVRSMF+NRN RRRLRLDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  QKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
           QK+   H+ S G R++GRS+RRSRRI S PHTS QDQ
Sbjct: 62  QKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQ 98

[Close]

BLAST of Lsi05G012430 vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSP 62
           ES VQFSET PFWTNEKHMHFLNSMEASFVRSMF+NRN RRRL+LDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDSP 61

Query: 63  QKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
           QK+   H+ S G R++GRS+RRSRRI S PHTS QDQ
Sbjct: 62  QKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQ 98

[Close]

BLAST of Lsi05G012430 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.1e-32
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSP 62
           ES VQFSET PFWTNEKHMHFLNSMEASFVRSMF+NRN RRRLRLDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  QKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
           QK+   H+ S G R++GRS+RRSRRI S PHTS QDQ
Sbjct: 62  QKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQ 97

[Close]

BLAST of Lsi05G012430 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 88/99 (88.89%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRN-PRRRLRLDRHLPDTADSTLDS 62
           ES VQFSETGPFWTNEKHMHFLNSMEASFV+SMFENRN  RRRLRLDRHLPDTADSTLDS
Sbjct: 2   ESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLDS 61

Query: 63  PQK-DTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
           PQK DT NHATS   RINGRS+RRSRRISS PHTSTQDQ
Sbjct: 62  PQKDDTKNHATSEAVRINGRSSRRSRRISSLPHTSTQDQ 100

[Close]

BLAST of Lsi05G012430 vs. NCBI nr
Match: XP_038882735.1 (uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 88/99 (88.89%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRN-PRRRLRLDRHLPDTADSTLDS 62
           ES VQFSETGPFWTNEKHMHFLNSMEASFV+SMFENRN  RRRLRLDRHLPDTADSTLDS
Sbjct: 2   ESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLDS 61

Query: 63  PQK-DTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
           PQK DT NHATS   RINGRS+RRSRRISS PHTSTQDQ
Sbjct: 62  PQKDDTKNHATS-AVRINGRSSRRSRRISSLPHTSTQDQ 99

[Close]

BLAST of Lsi05G012430 vs. NCBI nr
Match: XP_004140781.1 (uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical protein Csa_009764 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSP 62
           ES VQF++TGP WTNEKHMHFLNS+EASFVRSMF+NR  RR LRLDR LPDTADSTLDSP
Sbjct: 2   ESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDSP 61

Query: 63  QKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
              T NH TSG ARINGRSTRRSRRISSPP+TSTQDQ
Sbjct: 62  HNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQ 98

[Close]

BLAST of Lsi05G012430 vs. NCBI nr
Match: XP_008439192.1 (PREDICTED: uncharacterized protein LOC103484063 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 8.9e-34
Identity = 79/97 (81.44%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSP 62
           ES VQF++TGP WTNEKHMHFLNSMEASFVRSMF+NR  RRRLRLDR LPDTADSTLDSP
Sbjct: 2   ESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDSP 61

Query: 63  QKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
              T NH TSG AR+NGRSTRRSRR SSPP++STQDQ
Sbjct: 62  LNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQ 98

[Close]

BLAST of Lsi05G012430 vs. NCBI nr
Match: XP_022984699.1 (uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima])

HSP 1 Score: 150.6 bits (379), Expect = 7.6e-33
Identity = 78/97 (80.41%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 3   ESDVQFSETGPFWTNEKHMHFLNSMEASFVRSMFENRNPRRRLRLDRHLPDTADSTLDSP 62
           ES VQFSET PFWTNEKHMHFLNSMEASFVRSMF+NRN RRRLRLDRHL DTADSTLDSP
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  QKDTNNHATSGGARINGRSTRRSRRISSPPHTSTQDQ 100
           QK+   H+ S G R++GRS+RRSRRI S PHTS QDQ
Sbjct: 62  QKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQ 98

The following BLAST results are available for this feature:

BLAST of Lsi05G012430 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G012430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5V0	1.1e-34	82.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]
A0A1S3AYV4	4.3e-34	81.44	uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=...	[more]
A0A6J1JBA6	3.7e-33	80.41	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1E5I2	1.4e-32	79.38	uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J606	3.1e-32	80.41	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi05G012430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882732.1	1.5e-36	88.89	uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]	[more]
XP_038882735.1	1.6e-35	88.89	uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida]	[more]
XP_004140781.1	2.3e-34	82.47	uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical ...	[more]
XP_008439192.1	8.9e-34	81.44	PREDICTED: uncharacterized protein LOC103484063 [Cucumis melo]	[more]
XP_022984699.1	7.6e-33	80.41	uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima]	[more]

BLAST of Lsi05G012430 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..55
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 4..100
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 4..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G012430.1	Lsi05G012430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold