Lsi05G012250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G012250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Actin depolymerizing factor
Location	chr05: 20146208 .. 20147191 (+)
RNA-Seq Expression	Lsi05G012250
Synteny	Lsi05G012250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGAACTCTGCATCTGGAATGGCTGTGAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAAACAAGAGGAACTATCGATTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAGAAACTTGGATGCCCGGAAGAGACTTATGAAGATTTTGCTGCTGCTATTCCTGCTGATGAGTGTCGTTATGCTGTTTTTGACTTTGATTTCACTACTGATGAGAATTGCCAGAAAAGCAAGATTTTCTTCATAGCATGGTAAACTTCCAACTTTTCCTCTCTATCTAATACATATATTACGTTTTCTTATTACCTTTCACATTTCATAAGCATTTCGAAACTACTCTTGAAGTAGAAATCCGTTGTAATGTTCGAAAAAAATCAAGATTCGAATGCTTACACGCAGTTTGATAGCTTAAGGAATTTCTACTTGAAAGGTAGTTTTGAAACATTTTTACTAGAACCAATAAGTTTATAATGTAGCTATAAATAGCAATCCAAACAAACATTATACAAAACACCAATACTTTGATTGCCTCTTGAGAAACATAAGGGGGGACAGAGAGAGAGAATTTCAACATACTTTGGTAAAATTTCAACTTCTCAATCAAATTTTGTTACATAAACTAAACCTTAAAGTTGGAGACAAACACATGAACTAAGGTTGTCTGTGATGTCTCTGTTTTGAAGGTCACCTGACACATCAAAAGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACTGATCCTAGCGAAATGAGCTTTGACATAATCAAAGCTCGAGCTTTTTAAGCTCAATTTTCCTCTCTCTTTTTTCTCTTTTTCTTCATCTTCATTTTTGAGACTAAGCATAATTAATGTTGTGACATTACTCTCACTTTCTTTTCCCCCCTTTTTTCTTCTTTTTGTACCTTTTCATCTTTTTCAGAGCCT

mRNA sequence

GCGAACTCTGCATCTGGAATGGCTGTGAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAAACAAGAGGAACTATCGATTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAGAAACTTGGATGCCCGGAAGAGACTTATGAAGATTTTGCTGCTGCTATTCCTGCTGATGAGTCACCTGACACATCAAAAGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACTGATCCTAGCGAAATGAGCTTTGACATAATCAAAGCTCGAGCTTTTTAAGCTCAATTTTCCTCTCTCTTTTTTCTCTTTTTCTTCATCTTCATTTTTGAGACTAAGCATAATTAATGTTGTGACATTACTCTCACTTTCTTTTCCCCCCTTTTTTCTTCTTTTTGTACCTTTTCATCTTTTTCAGAGCCT

Coding sequence (CDS)

GCGAACTCTGCATCTGGAATGGCTGTGAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAAACAAGAGGAACTATCGATTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAGAAACTTGGATGCCCGGAAGAGACTTATGAAGATTTTGCTGCTGCTATTCCTGCTGATGAGTCACCTGACACATCAAAAGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACTGATCCTAGCGAAATGAGCTTTGACATAATCAAAGCTCGAGCTTTTTAA

Protein sequence

ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADESPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

Homology

[Close]

BLAST of Lsi05G012250 vs. ExPASy Swiss-Prot
Match: Q67ZM4 (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana OX=3702 GN=ADF7 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-41
Identity = 91/135 (67.41%), Postives = 104/135 (77.04%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAV DECKLKFLELK+KRNYRFIIF+I+ Q+VVVEKLG P+ETY+DF A++PA+
Sbjct: 2   ANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQVVVEKLGNPDETYDDFTASLPAN 61

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 110
           E                          SPD+S+VR KMVYASSKDRFKRELDGIQVELQA
Sbjct: 62  ECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQA 121

[Close]

BLAST of Lsi05G012250 vs. ExPASy Swiss-Prot
Match: Q8LFH6 (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana OX=3702 GN=ADF12 PE=2 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-38
Identity = 87/135 (64.44%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAV DECKLKFLELK KRNYRFIIF+I+ Q+VVVEKLG P+E Y+DF   +P +
Sbjct: 2   ANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQVVVEKLGSPQENYDDFTNYLPPN 61

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 110
           E                          SPD+S+VR KMVYASSKDRFKRELDGIQVELQA
Sbjct: 62  ECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQA 121

[Close]

BLAST of Lsi05G012250 vs. ExPASy Swiss-Prot
Match: Q9LQ81 (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana OX=3702 GN=ADF10 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-38
Identity = 88/136 (64.71%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIP 60
           ANSASGM V DECKLKFLELK KRNYRFI+FKI+   Q+V+++KLG PEETYEDF  +IP
Sbjct: 2   ANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIP 61

Query: 61  ADE--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVEL 109
            DE                          SPDTS+VR+KM+YASSKDRFKRELDGIQVEL
Sbjct: 62  EDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVEL 121

[Close]

BLAST of Lsi05G012250 vs. ExPASy Swiss-Prot
Match: P30175 (Actin-depolymerizing factor OS=Lilium longiflorum OX=4690 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.2e-37
Identity = 85/138 (61.59%), Postives = 99/138 (71.74%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIP 60
           ANS+SGMAV DECKLKF+ELK KRN+RFI+FKIE   Q+V VE+LG P E+Y+DF   +P
Sbjct: 2   ANSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECLP 61

Query: 61  ADE--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVEL 111
            +E                          SPDTS+VR+KM+YAS+KDRFKRELDGIQVEL
Sbjct: 62  PNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVEL 121

[Close]

BLAST of Lsi05G012250 vs. ExPASy Swiss-Prot
Match: Q7XSN9 (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF6 PE=2 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 7.2e-37
Identity = 86/137 (62.77%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIE--NQEVVVEKLGCPEETYEDFAAAIP 60
           ANSASGMAV DECKLKF ELK+KR++RFI FKI+   Q+VVV++LG P +TY+DF A++P
Sbjct: 2   ANSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMP 61

Query: 61  ADE--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVEL 110
           A E                          SPDTSKVR+KM+YASSKDRFKRELDGIQVEL
Sbjct: 62  ASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVEL 121

[Close]

BLAST of Lsi05G012250 vs. ExPASy TrEMBL
Match: A0A0A0LBE8 (ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182120 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.6e-45
Identity = 104/136 (76.47%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF+AAIPA+
Sbjct: 2   ANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYDDFSAAIPAN 61

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 62  ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 121

[Close]

BLAST of Lsi05G012250 vs. ExPASy TrEMBL
Match: A0A6J1CI48 (uncharacterized protein LOC111011601 OS=Momordica charantia OX=3673 GN=LOC111011601 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.4e-45
Identity = 104/136 (76.47%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           ANSASGMAVRDECKLKF+ELK KRNYRFIIFKIENQEVVVEKLG PEETYEDF AAIP D
Sbjct: 341 ANSASGMAVRDECKLKFMELKAKRNYRFIIFKIENQEVVVEKLGSPEETYEDFTAAIPPD 400

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTS+VRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 401 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSRVRNKMVYASSKDRFKRELDGIQVELQA 460

[Close]

BLAST of Lsi05G012250 vs. ExPASy TrEMBL
Match: A0A5A7SR44 (Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001180 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.7e-45
Identity = 104/136 (76.47%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF AAIPA+
Sbjct: 277 ANAASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 336

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 337 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 396

[Close]

BLAST of Lsi05G012250 vs. ExPASy TrEMBL
Match: A0A1S3AY90 (LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 OS=Cucumis melo OX=3656 GN=LOC103484078 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.7e-45
Identity = 104/136 (76.47%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF AAIPA+
Sbjct: 251 ANAASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 310

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 311 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 370

[Close]

BLAST of Lsi05G012250 vs. ExPASy TrEMBL
Match: A0A2G9HXM2 (Actin depolymerizing factor OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05027 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.8e-44
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           ANSASGMAV+D+CKLKFLELK KRNYRFIIFKIE+Q+VVVEKLG P+E Y+DF A++P+D
Sbjct: 2   ANSASGMAVKDDCKLKFLELKAKRNYRFIIFKIEDQQVVVEKLGSPDENYDDFTASLPSD 61

Query: 61  ESPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA 110
           ESPDTSKVR KM+YASSKDRFKRELDGIQVELQATDPSEMSFDIIK RA
Sbjct: 62  ESPDTSKVRMKMLYASSKDRFKRELDGIQVELQATDPSEMSFDIIKGRA 110

[Close]

BLAST of Lsi05G012250 vs. NCBI nr
Match: XP_038886312.1 (uncharacterized protein LOC120076526 [Benincasa hispida])

HSP 1 Score: 193.0 bits (489), Expect = 1.4e-45
Identity = 106/136 (77.94%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           ANSASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETYEDF AAIPA+
Sbjct: 310 ANSASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYEDFTAAIPAN 369

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 370 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 429

[Close]

BLAST of Lsi05G012250 vs. NCBI nr
Match: XP_031738809.1 (actin-depolymerizing factor 7 [Cucumis sativus] >KGN57376.1 hypothetical protein Csa_009508 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 5.3e-45
Identity = 104/136 (76.47%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF+AAIPA+
Sbjct: 2   ANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYDDFSAAIPAN 61

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 62  ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 121

[Close]

BLAST of Lsi05G012250 vs. NCBI nr
Match: XP_022141136.1 (uncharacterized protein LOC111011601 [Momordica charantia])

HSP 1 Score: 190.3 bits (482), Expect = 9.0e-45
Identity = 104/136 (76.47%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           ANSASGMAVRDECKLKF+ELK KRNYRFIIFKIENQEVVVEKLG PEETYEDF AAIP D
Sbjct: 341 ANSASGMAVRDECKLKFMELKAKRNYRFIIFKIENQEVVVEKLGSPEETYEDFTAAIPPD 400

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTS+VRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 401 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSRVRNKMVYASSKDRFKRELDGIQVELQA 460

[Close]

BLAST of Lsi05G012250 vs. NCBI nr
Match: KAA0033654.1 (zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.2e-44
Identity = 104/136 (76.47%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF AAIPA+
Sbjct: 277 ANAASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 336

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 337 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 396

[Close]

BLAST of Lsi05G012250 vs. NCBI nr
Match: XP_008439227.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 1.2e-44
Identity = 104/136 (76.47%), Postives = 107/136 (78.68%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF AAIPA+
Sbjct: 251 ANAASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPAN 310

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 111
           E                          SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA
Sbjct: 311 ECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 370

[Close]

BLAST of Lsi05G012250 vs. TAIR 10
Match: AT4G25590.1 (actin depolymerizing factor 7 )

HSP 1 Score: 170.2 bits (430), Expect = 9.0e-43
Identity = 91/135 (67.41%), Postives = 104/135 (77.04%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAV DECKLKFLELK+KRNYRFIIF+I+ Q+VVVEKLG P+ETY+DF A++PA+
Sbjct: 2   ANAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQVVVEKLGNPDETYDDFTASLPAN 61

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 110
           E                          SPD+S+VR KMVYASSKDRFKRELDGIQVELQA
Sbjct: 62  ECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQA 121

[Close]

BLAST of Lsi05G012250 vs. TAIR 10
Match: AT5G52360.1 (actin depolymerizing factor 10 )

HSP 1 Score: 160.2 bits (404), Expect = 9.3e-40
Identity = 87/135 (64.44%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAV DECKLKFLELK KRNYRFIIF+I+ Q+VVVEKLG P+E Y+DF   +P +
Sbjct: 2   ANAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQVVVEKLGSPQENYDDFTNYLPPN 61

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 110
           E                          SPD+S+VR KMVYASSKDRFKRELDGIQVELQA
Sbjct: 62  ECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQA 121

[Close]

BLAST of Lsi05G012250 vs. TAIR 10
Match: AT1G01750.1 (actin depolymerizing factor 11 )

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-39
Identity = 88/136 (64.71%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIP 60
           ANSASGM V DECKLKFLELK KRNYRFI+FKI+   Q+V+++KLG PEETYEDF  +IP
Sbjct: 2   ANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIP 61

Query: 61  ADE--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVEL 109
            DE                          SPDTS+VR+KM+YASSKDRFKRELDGIQVEL
Sbjct: 62  EDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVEL 121

[Close]

BLAST of Lsi05G012250 vs. TAIR 10
Match: AT3G46000.1 (actin depolymerizing factor 2 )

HSP 1 Score: 153.7 bits (387), Expect = 8.7e-38
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPAD 60
           AN+ASGMAV D+CKLKF+ELK KR +R I++KIE+++V+VEKLG PE++Y+DFAA++PAD
Sbjct: 2   ANAASGMAVHDDCKLKFMELKAKRTFRTIVYKIEDKQVIVEKLGEPEQSYDDFAASLPAD 61

Query: 61  E--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVELQA 109
           +                          SPDT+KVR+KM+YASSKDRFKRELDGIQVELQA
Sbjct: 62  DCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQA 121

[Close]

BLAST of Lsi05G012250 vs. TAIR 10
Match: AT4G00680.1 (actin depolymerizing factor 8 )

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-37
Identity = 84/136 (61.76%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 1   ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIP 60
           ANSASGM V DECK+KFLELK KR YRFI+FKI+   Q+V +EKLG PEETY+DF ++IP
Sbjct: 2   ANSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIP 61

Query: 61  ADE--------------------------SPDTSKVRNKMVYASSKDRFKRELDGIQVEL 109
            DE                          SPDTS+VR+KM+YASSKDRFKRE++GIQVEL
Sbjct: 62  DDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVEL 121

The following BLAST results are available for this feature:

BLAST of Lsi05G012250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67ZM4	1.3e-41	67.41	Actin-depolymerizing factor 7 OS=Arabidopsis thaliana OX=3702 GN=ADF7 PE=2 SV=1	[more]
Q8LFH6	1.3e-38	64.44	Actin-depolymerizing factor 12 OS=Arabidopsis thaliana OX=3702 GN=ADF12 PE=2 SV=...	[more]
Q9LQ81	2.9e-38	64.71	Actin-depolymerizing factor 10 OS=Arabidopsis thaliana OX=3702 GN=ADF10 PE=2 SV=...	[more]
P30175	4.2e-37	61.59	Actin-depolymerizing factor OS=Lilium longiflorum OX=4690 PE=2 SV=1	[more]
Q7XSN9	7.2e-37	62.77	Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF6 P...	[more]

BLAST of Lsi05G012250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBE8	2.6e-45	76.47	ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182120 PE=3 ...	[more]
A0A6J1CI48	4.4e-45	76.47	uncharacterized protein LOC111011601 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5A7SR44	5.7e-45	76.47	Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3AY90	5.7e-45	76.47	LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 OS=Cucumis melo OX=365...	[more]
A0A2G9HXM2	2.8e-44	85.32	Actin depolymerizing factor OS=Handroanthus impetiginosus OX=429701 GN=CDL12_050...	[more]

BLAST of Lsi05G012250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886312.1	1.4e-45	77.94	uncharacterized protein LOC120076526 [Benincasa hispida]	[more]
XP_031738809.1	5.3e-45	76.47	actin-depolymerizing factor 7 [Cucumis sativus] >KGN57376.1 hypothetical protein...	[more]
XP_022141136.1	9.0e-45	76.47	uncharacterized protein LOC111011601 [Momordica charantia]	[more]
KAA0033654.1	1.2e-44	76.47	zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa]	[more]
XP_008439227.1	1.2e-44	76.47	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis me...	[more]

BLAST of Lsi05G012250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25590.1	9.0e-43	67.41	actin depolymerizing factor 7	[more]
AT5G52360.1	9.3e-40	64.44	actin depolymerizing factor 10	[more]
AT1G01750.1	2.1e-39	64.71	actin depolymerizing factor 11	[more]
AT3G46000.1	8.7e-38	58.21	actin depolymerizing factor 2	[more]
AT4G00680.1	1.1e-37	61.76	actin depolymerizing factor 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 11..110 e-value: 6.8E-27 score: 105.3
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 13..60 e-value: 3.6E-5 score: 23.5 coord: 62..107 e-value: 1.7E-12 score: 47.2
IPR002108	Actin-depolymerising factor homology domain	PROSITE	PS51263	ADF_H	coord: 1..110 score: 12.622503
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 62..109 e-value: 1.7E-16 score: 62.2
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 1..61 e-value: 8.8E-15 score: 56.4
None	No IPR available	PANTHER	PTHR11913:SF92	COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN	coord: 62..110
None	No IPR available	PANTHER	PTHR11913:SF92	COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN	coord: 1..61
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 2..108
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 1..61
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 62..110
IPR017904	ADF/Cofilin	CDD	cd11286	ADF_cofilin_like	coord: 5..109 e-value: 1.08664E-38 score: 124.206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G012250.1	Lsi05G012250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0003779	actin binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding