Lsi05G011980 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGCGTACTCTTAATGAGCCGGTATCTTTAGTTGCTATTTGTGTTTATATGCTTTAGGTTTTAAACATTTCCTTCCCTTTTGCTGTGATTTTTACGCCGTTTCCCCTATGCTGCTACCTCTTTGCCGATCAAACGGTTTAAAATCTGTGATCTGGGTATCTTGGACTATAATTTAGCGGACCGGCAAAGAGATATGCGATTGAGCCCCCAATCTCTTTTCATTTTGCTTTCGTTTTGAAACATATATGCTTTCTTGCACGGGTGATGAATTAGGATTGAATTATATGGGTATTTCTTAATCTTTACATTTTGCATACTGTATATTTGGATTTGGTGTTAATGTCTGTGGTAGTAGTTTAAGAAATCTTAAATTCACGTTTCCTTATTTGATGGAGTTCACTACTCACTACGAAGGACTTATTGTCATGATGGTAATTGCTTGGTTTCTAGACTTGGTTGCTGGTTTGTAACGTGTTTAGTTTAATGCCCGGCCAAACTGATGGTTTGATCAGAGGGTTGTACCTCAGACTAATTCAATTACTTTTAGTCAATTCCTAAATACGTAGTAGTTGAACTGTAAATGGTGTTGGGGTGGGTGCAAAGTTTCAGTCAAATTTTGAATTGATGGTCATTTATGCTTCGTGTGCTCATGAGTATATAATACTTGGTTTATAGACCTGATTGGAGGTTTCTAACATGATCAGTTTGATGCCCTAAACTTGAGTCTCAATTAGATGCAGTACCTAAAGCTAATTCGTTTATTATTAGTCAAGTTCAAAATACATAGTTAGATGGTGGTGGGACATGGGTATAAAGTCTCAGGAAGATTTGAATTGATGTTCTGTATTCATATTTATTTGGATTTTTCTTCTTGAACAACCACATATGATATGGTATACGTGAATGAAGGATGATGTAAGTGAAATTGAATGCAAAAGGAAGAGAATGAGGGTGGAAGGGTGTGACCACGAACTTAAGCTGTGAGGCTCAGATGGCCAATCGCTATGCAATTCTATAATTGCTATACACATGCAGTATATGCTTCTAGTGCTATTGAATATTCCTTTGTATCATTTCACTGAAAATTTACATAATTTTTGCATTAAAGTATCTGCATAAGGCATGTTTCTTTCATGGCTGCAATTTAGTTTACCCATGCTTTTTACTGGTAACTATGAGGTACCTAGTACTTGACGTTGGATTATATGATTGTTCTCTCTATGGGGTTCCTGGTTTGTTTGTCCAGTTCTGTTGAATGAGCTTATAATAGACTTTTTTTCTTTTTTCTTTTTTCTAATGAAGTTTATTGACAGTTATATTCTATTCAATCCACAGCCATCAGGGAAGGGCTCATGTGAGTTGCACGGTTTTAGGCAGTATAGTGTTTGCTGCTACCATTGGAATATAATAGAGCATCTCTTGGTTCATTTGATATGCACAAAATGGATAAGTGGAAAGGTTCTGGAAAACTAGGACGACTGGTGCCGAGAGGTGGTTCTATGACTTCTTACAAGTATGCTCTTTTGTTGTCACCTGTTGTCTCTGTCTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGGTGTAGTGTTTAGGATAGTAAAATATAGTAGATTTTAATAAAGTGATCCACTATAGATTTTATAGTATCATGATGAAAGGATGGAAAAACAATTACGAGGATATATATACTACTTACAACTAGTTCTTTGAAAAAAGAGATTGAAAAGATTAGTTAGATATGGCTAGTTTTGTGGCTAGTATGGGTAATAAAGGACAACCTATCGTGAAGAAAGCAAAAAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAAGCTGAGAAGAAAAAGAGACGGTTAGAAAAAGCCCTTGCTACTTCAGCAGCTATTATATCTGAACTTGAAAAGAAAAAACAAATGAAGAAGGAAGAACAGCAAAGGCTAGATGAAGAAGGTGCTGCTATTGCTGAGGCTGTTGCTCTGCATGTCTTGATTGGTGAAGATTCAGATGACTCATACAAGATTCTTCTTAAGAACGATGGTCTCAACCCTTGGGAGTGCCCTGAGCAGTTCGACCACGTAATGAATGTTACAAGACCTGGCATTCCAGTGCAGGAGTTCGGGAGGTGTTCCCTCGAAGGGACTGGTTGGACCTCTAATATCGATAGATTTGGATCAATGTGGCACGGTTTTACGAATGACTACTGGTCAGTTTCAGCTGGACCTTATGCCGAAGATCACCACACTTTATGTTTCGAGCAAGTTGATGGTGCTGTAAATGAGATTTCTGCTGGTATTATAGCGGCACAGGCTGTCTCATCACTTCAGATAACGGTAGATGGGGATGAAGAAATCAATGTCCTTAACAGAATGCGAAGGGGTATGTAAATTACTCTGCACATTTGAGATGGTGGTAGTTTGGTTTGGTACATGTTTGCGGAATTGTTTGCCTTTCATTGTCGACCTGAATCCTGCCATTTACAGGGAGATTTGTCGTCTTTTTGTGGGGAGTTTCAAGTTATCTTGTACCCAGAGTCGTTCTTATAGACCTTAAAAGTTTCAAATTCAACCTTGTGCAGTTGATGTGTTGGTGTGCTCCAAGGGCACGCCCAGCAGCAGTTAATGCATTCTTGCCAAGCCTGTTCACTGAGATCATTATTCCTTAGTCCTGTGGCTTGTTGAATTGTATTTTATATGAATTTGTATTATAGAAATGTTATGCTTCAATGACTTTAACTGGAATGCTTTTTCTGCTTGGGATTGAATGCTGATACTAGTTACTGATTCACCTAGACCAATCGTTTACATCCGAGGTTTTTCCAGATATATACTCGAAATGATTCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCTTTCTCGGTCAAAAAATATGTTTGAAGAATTGAAGAATTGAAATTGACAATCTACAGAAGGAAATTTTATTCCCATCATTTGAGCCCAAATTTAGGAAGAACGCCGATATGAAATGTTACTAAGTTTTTCTTACCTTTTAAATTAGGTAAACGGCCAAAGATGAACCCAAATTTAAAGATCTAATTTCGTTCAAATTTCCATGCTTACATACAGCAGTTGGTACTAAGAAAACGGGTGTATAAACAAGCGACACCATGCAAAATGAACTTTCAAGCAAAATAGAACCAAGAAATGGGTTGCATTATCTTATCTAATCTAACCTATCAAAGATCAGCAGCTTACACCTTTCGCCCACTTGCTATGCAGTGACTTTGTAGGATTCTGCACAGAATATAATCAGATGCAAAAGAAGGGGCAGCGCCCTAAACGCACACAAATCAATATATTTCTCAGTAATAAAAATGAAATTTTACACTTAATGAAACAAATAAACCTAAGTTCATCAACACGATTTCTCCACTTGTACCTAACAATATTCCAGAACAACACTTTCATATATCATGTTGCGATCGCGAATTGAGCAATATTGGTGTCTCTTCACTTGCTTTGCGTTGTTGTTGCTGTGCACCTTCAACTTGATTCCCTATTTCTGAACTACTCGATGGTTTGGCACCAGTAGTAATAAGATTCTTAAACCATGCAGCTTGAAATCTAGGAGTACCTCTATTTGAATTACTAGTAGACTCTGTAGAAGATATCACGTTGTTCGTTGCCCCTAGTAGAAAACGGTAAGCCACTTTGCTGGCCGATATGATCTCTGTCTTTGCTTGTTTGAACTGCAATCATCCGATAAAAAAACCAACAAAGCACGTTTAGTTCATCAATCATCACACACATGACACATTATAATTACCCAGCTCTTTGTATATAGTTTATAATTTTCTTCTCTAGGAAAATGAGTAAATTGTCTAGCTTTTGGGTAACGAATCTTAGGATCTTAAAAACCAGAATGGAAGTTGAATAGTAACAAAAAATTTGACCAAATTACATAACACCTACGATAACATAAAGTCTTAAGAATGTATTGCATGCAGATCATTCATGTATAACCATTGTGCATGGATCAATCATGCCTACACTTCATACCTAACGGCAACAAGATTAGTACTGCCTTTGCAGAACAGAAACATTTTGAAATATGTTGATATGCAAAGGGCCGAGCTAATGCAAGTTGAGGTAAAATTCCCTTAAAATATGCAACATGTTGCGTGATTGCTCAGTCCAAAAAAGAGTCTCATTATGACGTGTAAAATGTTATGCAGTTATATGTTGCAGTAAAAATCTTACACGAACTGCTGTGTTTCCAGCTACTTCCAATGCAGCATCACCAGCATTGGCAAACCGATTAACCCAACCTACAACAGGATAA ATGCGCGTACTCTTAATGAGCCGTTTATTGACAGTTATATTCTATTCAATCCACAGCCATCAGGGAAGGGCTCATTGTTTGCTGCTACCATTGGAATATAATAGAGCATCTCTTGGTTCATTTGATATGCACAAAATGGATAAGTGGAAAGGTTCTGGAAAACTAGGACGACTGGTGCCGAGAGGTGGTTCTATGACTTCTTACAAGTATGCTCTTTTGTTGTCACCTGTTGTCTCTGTCTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGTTAGATATGGCTAGTTTTGTGGCTAGTATGGGTAATAAAGGACAACCTATCGTGAAGAAAGCAAAAAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAAGCTGAGAAGAAAAAGAGACGGTTAGAAAAAGCCCTTGCTACTTCAGCAGCTATTATATCTGAACTTGAAAAGAAAAAACAAATGAAGAAGGAAGAACAGCAAAGGCTAGATGAAGAAGGTGCTGCTATTGCTGAGGCTGTTGCTCTGCATGTCTTGATTGGTGAAGATTCAGATGACTCATACAAGATTCTTCTTAAGAACGATGGTCTCAACCCTTGGGAGTGCCCTGAGCAGTTCGACCACGTAATGAATGTTACAAGACCTGGCATTCCAGTGCAGGAGTTCGGGAGGTGTTCCCTCGAAGGGACTGGTTGGACCTCTAATATCGATAGATTTGGATCAATGTGGCACGGTTTTACGAATGACTACTGGTCAGTTTCAGCTGGACCTTATGCCGAAGATCACCACACTTTATGTTTCGAGCAAGTTGATGGTGCTGTAAATGAGATTTCTGCTGGTATTATAGCGGCACAGGCTGTCTCATCACTTCAGATAACGGTAGATGGGGATGAAGAAATCAATGTCCTTAACAGAATGCGAAGGGACTCTGTAGAAGATATCACGTTGTTCGTTGCCCCTAGTAGAAAACGTAAAAATCTTACACGAACTGCTGTGTTTCCAGCTACTTCCAATGCAGCATCACCAGCATTGGCAAACCGATTAACCCAACCTACAACAGGATAA ATGCGCGTACTCTTAATGAGCCGTTTATTGACAGTTATATTCTATTCAATCCACAGCCATCAGGGAAGGGCTCATTGTTTGCTGCTACCATTGGAATATAATAGAGCATCTCTTGGTTCATTTGATATGCACAAAATGGATAAGTGGAAAGGTTCTGGAAAACTAGGACGACTGGTGCCGAGAGGTGGTTCTATGACTTCTTACAAGTATGCTCTTTTGTTGTCACCTGTTGTCTCTGTCTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGTTAGATATGGCTAGTTTTGTGGCTAGTATGGGTAATAAAGGACAACCTATCGTGAAGAAAGCAAAAAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAAGCTGAGAAGAAAAAGAGACGGTTAGAAAAAGCCCTTGCTACTTCAGCAGCTATTATATCTGAACTTGAAAAGAAAAAACAAATGAAGAAGGAAGAACAGCAAAGGCTAGATGAAGAAGGTGCTGCTATTGCTGAGGCTGTTGCTCTGCATGTCTTGATTGGTGAAGATTCAGATGACTCATACAAGATTCTTCTTAAGAACGATGGTCTCAACCCTTGGGAGTGCCCTGAGCAGTTCGACCACGTAATGAATGTTACAAGACCTGGCATTCCAGTGCAGGAGTTCGGGAGGTGTTCCCTCGAAGGGACTGGTTGGACCTCTAATATCGATAGATTTGGATCAATGTGGCACGGTTTTACGAATGACTACTGGTCAGTTTCAGCTGGACCTTATGCCGAAGATCACCACACTTTATGTTTCGAGCAAGTTGATGGTGCTGTAAATGAGATTTCTGCTGGTATTATAGCGGCACAGGCTGTCTCATCACTTCAGATAACGGTAGATGGGGATGAAGAAATCAATGTCCTTAACAGAATGCGAAGGGACTCTGTAGAAGATATCACGTTGTTCGTTGCCCCTAGTAGAAAACGTAAAAATCTTACACGAACTGCTGTGTTTCCAGCTACTTCCAATGCAGCATCACCAGCATTGGCAAACCGATTAACCCAACCTACAACAGGATAA MRVLLMSRLLTVIFYSIHSHQGRAHCLLLPLEYNRASLGSFDMHKMDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWLDMASFVASMGNKGQPIVKKAKKKQVKDELDRQKQAEKKKRRLEKALATSAAIISELEKKKQMKKEEQQRLDEEGAAIAEAVALHVLIGEDSDDSYKILLKNDGLNPWECPEQFDHVMNVTRPGIPVQEFGRCSLEGTGWTSNIDRFGSMWHGFTNDYWSVSAGPYAEDHHTLCFEQVDGAVNEISAGIIAAQAVSSLQITVDGDEEINVLNRMRRDSVEDITLFVAPSRKRKNLTRTAVFPATSNAASPALANRLTQPTTG Homology
BLAST of Lsi05G011980 vs. ExPASy TrEMBL
Match: A0A5D3DHX4 (Transport protein SEC31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00960 PE=4 SV=1) HSP 1 Score: 485.0 bits (1247), Expect = 2.8e-133 Identity = 251/280 (89.64%), Postives = 258/280 (92.14%), Query Frame = 0
BLAST of Lsi05G011980 vs. ExPASy TrEMBL
Match: A0A5A7SSX2 (Transport protein SEC31 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001690 PE=4 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 2.4e-108 Identity = 207/224 (92.41%), Postives = 214/224 (95.54%), Query Frame = 0
BLAST of Lsi05G011980 vs. ExPASy TrEMBL
Match: A0A0A0L6N8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183910 PE=4 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 1.2e-107 Identity = 203/214 (94.86%), Postives = 209/214 (97.66%), Query Frame = 0
BLAST of Lsi05G011980 vs. ExPASy TrEMBL
Match: A0A6J1E7A4 (uncharacterized protein LOC111430580 OS=Cucurbita moschata OX=3662 GN=LOC111430580 PE=4 SV=1) HSP 1 Score: 384.4 bits (986), Expect = 5.1e-103 Identity = 197/215 (91.63%), Postives = 207/215 (96.28%), Query Frame = 0
BLAST of Lsi05G011980 vs. ExPASy TrEMBL
Match: A0A6J1CJF6 (uncharacterized protein LOC111011555 OS=Momordica charantia OX=3673 GN=LOC111011555 PE=4 SV=1) HSP 1 Score: 382.9 bits (982), Expect = 1.5e-102 Identity = 196/214 (91.59%), Postives = 204/214 (95.33%), Query Frame = 0
BLAST of Lsi05G011980 vs. NCBI nr
Match: TYK22990.1 (Transport protein SEC31 [Cucumis melo var. makuwa]) HSP 1 Score: 485.0 bits (1247), Expect = 5.8e-133 Identity = 251/280 (89.64%), Postives = 258/280 (92.14%), Query Frame = 0
BLAST of Lsi05G011980 vs. NCBI nr
Match: KAG6574198.1 (hypothetical protein SDJN03_28085, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 441.8 bits (1135), Expect = 5.6e-120 Identity = 231/268 (86.19%), Postives = 239/268 (89.18%), Query Frame = 0
BLAST of Lsi05G011980 vs. NCBI nr
Match: KAG6576701.1 (hypothetical protein SDJN03_24275, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 441.4 bits (1134), Expect = 7.3e-120 Identity = 229/271 (84.50%), Postives = 243/271 (89.67%), Query Frame = 0
BLAST of Lsi05G011980 vs. NCBI nr
Match: KAA0033698.1 (Transport protein SEC31 [Cucumis melo var. makuwa]) HSP 1 Score: 402.1 bits (1032), Expect = 4.9e-108 Identity = 207/224 (92.41%), Postives = 214/224 (95.54%), Query Frame = 0
BLAST of Lsi05G011980 vs. NCBI nr
Match: XP_004140761.1 (uncharacterized protein LOC101212865 [Cucumis sativus] >XP_004140762.1 uncharacterized protein LOC101212865 [Cucumis sativus] >KGN57408.1 hypothetical protein Csa_010296 [Cucumis sativus]) HSP 1 Score: 399.8 bits (1026), Expect = 2.4e-107 Identity = 203/214 (94.86%), Postives = 209/214 (97.66%), Query Frame = 0
BLAST of Lsi05G011980 vs. TAIR 10
Match: AT4G25670.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 138.7 bits (348), Expect = 9.4e-33 Identity = 103/208 (49.52%), Postives = 124/208 (59.62%), Query Frame = 0
BLAST of Lsi05G011980 vs. TAIR 10
Match: AT4G25670.2 (unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). ) HSP 1 Score: 138.7 bits (348), Expect = 9.4e-33 Identity = 103/208 (49.52%), Postives = 124/208 (59.62%), Query Frame = 0
BLAST of Lsi05G011980 vs. TAIR 10
Match: AT4G25690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 73 Blast hits to 60 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 137.5 bits (345), Expect = 2.1e-32 Identity = 100/200 (50.00%), Postives = 119/200 (59.50%), Query Frame = 0
BLAST of Lsi05G011980 vs. TAIR 10
Match: AT4G25690.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 137.5 bits (345), Expect = 2.1e-32 Identity = 100/200 (50.00%), Postives = 119/200 (59.50%), Query Frame = 0
BLAST of Lsi05G011980 vs. TAIR 10
Match: AT5G52550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 119.8 bits (299), Expect = 4.5e-27 Identity = 89/199 (44.72%), Postives = 115/199 (57.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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