Lsi05G011890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G011890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Sterol regulatory element-binding protein cleavage-activating protein, putative
Location	chr05: 19794640 .. 19795194 (+)
RNA-Seq Expression	Lsi05G011890
Synteny	Lsi05G011890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCCCTAGTGTGTTCCTTTCGCCAAGCTCTCCTCCTCTCGAAGCCTCCGCCATGGAATCAAAGAACCCGAATCAACGACTCAATAATCACGAAGAATCTCAGCAATTTCACAACAACATCCAGAGGCCAAGTCCAAGTAAACGCCAAGGGCTTCACTGGTTCTCCGGCGACAGCGAAAGACAGAGAAACCGCTGCGAAAAAGCTTTCCGGCCAAAACAACAACAACGAAGACGACGACGATGAAATTCCAGAAGCCGTATACAGCAGGATTATAACGAGAATATTAGCTTTCGTAGGAGTTCCGATGGCCTTCGGTGTGACATTGCTGAAAATTTTTCAGGCGATCAAGGAACAAAACATTTGGGATGTGCCGATTTGGCTGCCATTTTTTACGACTTTCTTGACATTCGGAGCTTCGACGATGGGAATTGCTTACGGGACGTTATCGACGAGTTTGGATCCGGAGAAGAAAGGATCTCTGTTCGGATGGGAGGAGGCGCAGAAGAATTGGGTTGAAATGTGGAAGGAGGAAGATGAAGCCAGTCGCTGA

mRNA sequence

ATGAAAGCCCTAGTGTGTTCCTTTCGCCAAGCTCTCCTCCTCTCGAAGCCTCCGCCATGGAATCAAAGAACCCGAATCAACGACTCAATAATCACGAAGAATCTCAGCAATTTCACAACAACATCCAGAGGCCAAGTCCAAGTAAACGCCAAGGGCTTCACTGGTTCTCCGGCGACAGCGAAAGACAGAGAAACCGCTGCGAAAAAGCTTTCCGGCCAAAACAACAACAACGAAGACGACGACGATGAAATTCCAGAAGCCGTATACAGCAGGATTATAACGAGAATATTAGCTTTCGTAGGAGTTCCGATGGCCTTCGGTGTGACATTGCTGAAAATTTTTCAGGCGATCAAGGAACAAAACATTTGGGATGTGCCGATTTGGCTGCCATTTTTTACGACTTTCTTGACATTCGGAGCTTCGACGATGGGAATTGCTTACGGGACGTTATCGACGAGTTTGGATCCGGAGAAGAAAGGATCTCTGTTCGGATGGGAGGAGGCGCAGAAGAATTGGGTTGAAATGTGGAAGGAGGAAGATGAAGCCAGTCGCTGA

Coding sequence (CDS)

ATGAAAGCCCTAGTGTGTTCCTTTCGCCAAGCTCTCCTCCTCTCGAAGCCTCCGCCATGGAATCAAAGAACCCGAATCAACGACTCAATAATCACGAAGAATCTCAGCAATTTCACAACAACATCCAGAGGCCAAGTCCAAGTAAACGCCAAGGGCTTCACTGGTTCTCCGGCGACAGCGAAAGACAGAGAAACCGCTGCGAAAAAGCTTTCCGGCCAAAACAACAACAACGAAGACGACGACGATGAAATTCCAGAAGCCGTATACAGCAGGATTATAACGAGAATATTAGCTTTCGTAGGAGTTCCGATGGCCTTCGGTGTGACATTGCTGAAAATTTTTCAGGCGATCAAGGAACAAAACATTTGGGATGTGCCGATTTGGCTGCCATTTTTTACGACTTTCTTGACATTCGGAGCTTCGACGATGGGAATTGCTTACGGGACGTTATCGACGAGTTTGGATCCGGAGAAGAAAGGATCTCTGTTCGGATGGGAGGAGGCGCAGAAGAATTGGGTTGAAATGTGGAAGGAGGAAGATGAAGCCAGTCGCTGA

Protein sequence

MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

Homology

[Close]

BLAST of Lsi05G011890 vs. ExPASy Swiss-Prot
Match: Q9LTD9 (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-30
Identity = 74/180 (41.11%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNL-SNFTTTSRGQVQVNAKGFTGSPAT 60
           M+AL+CS R  L LS       +T+ ++    K L  N       ++    KGF  S  +
Sbjct: 1   MRALLCSHR-LLPLSSLSRTTVKTKSHN---PKTLYPNNKPRWESKLHAGPKGFQSSRTS 60

Query: 61  AKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKE 120
            K          G+ + + +DD  IP+ V+ R++ RI+  VG P+  GV +LK+ + +K+
Sbjct: 61  EK---------PGRPDPDPEDDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKD 120

Query: 121 QNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE 180
           +N+WDVP+W+P+ TT +TFG+S +GIAYG+LST+LDP K  SLFG +EA++NWVEMWKE+
Sbjct: 121 RNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWKED 167

[Close]

BLAST of Lsi05G011890 vs. ExPASy Swiss-Prot
Match: O49668 (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-18
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 51  KGFTGSP-ATAKDRETAAKKLSGQNNNNEDDDDE----------IPEAVYSRIITRILAF 110
           KGF   P  T K ++      S +++++ED+DD+          IPE V +R+I+R+   
Sbjct: 68  KGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNRMISRMGFT 127

Query: 111 VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKK 170
           VG+P+  G+     F  +K     DVP W+PF  +F+ FG +  G++YG +S+S DP ++
Sbjct: 128 VGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLRE 187

Query: 171 GSLFGWEEAQKNWVEMWK 178
           GSL GW EA+KNW   W+
Sbjct: 188 GSLLGWNEAKKNWPVFWQ 205

[Close]

BLAST of Lsi05G011890 vs. ExPASy TrEMBL
Match: A0A5A7STB5 (Putative Sterol regulatory element-binding protein cleavage-activating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001970 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.5e-86
Identity = 168/185 (90.81%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60
           MK+  CSFRQALLL KPPP NQRT  INDS ITKNLSNFTTTSRGQVQVNAKGFTGSPAT
Sbjct: 1   MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60

Query: 61  AKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKE 120
           AK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAFVG+PMAFGVTLLKIFQAIKE
Sbjct: 61  AKNRETAAKNLSGQ-NNNEDDDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAIKE 120

Query: 121 QNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE 180
           QN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEE
Sbjct: 121 QNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGWEEAQKNWVEMWKEE 180

Query: 181 DEASR 185
           DE SR
Sbjct: 181 DEVSR 184

[Close]

BLAST of Lsi05G011890 vs. ExPASy TrEMBL
Match: A0A1S3AZ57 (uncharacterized protein PAM68-like OS=Cucumis melo OX=3656 GN=LOC103484134 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.5e-86
Identity = 168/185 (90.81%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60
           MK+  CSFRQALLL KPPP NQRT  INDS ITKNLSNFTTTSRGQVQVNAKGFTGSPAT
Sbjct: 1   MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60

Query: 61  AKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKE 120
           AK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAFVG+PMAFGVTLLKIFQAIKE
Sbjct: 61  AKNRETAAKNLSGQ-NNNEDDDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAIKE 120

Query: 121 QNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE 180
           QN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEE
Sbjct: 121 QNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGWEEAQKNWVEMWKEE 180

Query: 181 DEASR 185
           DE SR
Sbjct: 181 DEVSR 184

[Close]

BLAST of Lsi05G011890 vs. ExPASy TrEMBL
Match: A0A5D3DHC5 (Putative Sterol regulatory element-binding protein cleavage-activating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G001260 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.5e-85
Identity = 167/185 (90.27%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60
           MK+  CSFRQALLL KPPP NQRT  INDS ITKN SNFTTTSRGQVQVNAKGFTGSPAT
Sbjct: 1   MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNRSNFTTTSRGQVQVNAKGFTGSPAT 60

Query: 61  AKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKE 120
           AK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAFVG+PMAFGVTLLKIFQAIKE
Sbjct: 61  AKNRETAAKNLSGQ-NNNEDDDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAIKE 120

Query: 121 QNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE 180
           QN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEE
Sbjct: 121 QNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVVGWEEAQKNWVEMWKEE 180

Query: 181 DEASR 185
           DE SR
Sbjct: 181 DEVSR 184

[Close]

BLAST of Lsi05G011890 vs. ExPASy TrEMBL
Match: A0A6J1CGP3 (uncharacterized protein PAM68-like OS=Momordica charantia OX=3673 GN=LOC111011500 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 148/184 (80.43%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATA 60
           MKAL+CS+RQAL LS+PPPW  R+RINDS ITKNL+N +  +RG V+VNAKGFTG+PATA
Sbjct: 1   MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATA 60

Query: 61  KDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQ 120
           K+RE AA+K+SGQNN++ DDDDEI EAV +RIITRILAFVGVPMAFGV LLKIF+ IKEQ
Sbjct: 61  KEREAAARKISGQNNSSNDDDDEISEAVSNRIITRILAFVGVPMAFGVALLKIFETIKEQ 120

Query: 121 NIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEED 180
            +WDVPIWLPF TTFLTFGAST+GIAYGTLS SLDPEK+GSLFGWEEAQKNWVEMWKEED
Sbjct: 121 KVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEED 180

Query: 181 EASR 185
           EASR
Sbjct: 181 EASR 184

[Close]

BLAST of Lsi05G011890 vs. ExPASy TrEMBL
Match: A0A0A0LLM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G213970 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.8e-78
Identity = 156/186 (83.87%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRTR-INDSIITKNLSNFT-TTSRGQVQVNAKGFTGSPA 60
           MK+L CSF QALLLS PPPWNQRT  IN S IT NL+NFT T SRGQVQVNAKGFT SP 
Sbjct: 1   MKSLACSFPQALLLSNPPPWNQRTLIINHSTITNNLTNFTPTLSRGQVQVNAKGFTNSPR 60

Query: 61  TAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIK 120
           TAK+RET A+      NNNEDDDDEIPEAVYSRIITRILAFVG+PMAFGVTLLKIFQAIK
Sbjct: 61  TAKNRETTAQ------NNNEDDDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAIK 120

Query: 121 EQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKE 180
           EQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKE
Sbjct: 121 EQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGWEEAQKNWVEMWKE 180

Query: 181 EDEASR 185
           EDE  R
Sbjct: 181 EDEGRR 180

[Close]

BLAST of Lsi05G011890 vs. NCBI nr
Match: XP_038877436.1 (uncharacterized protein PAM68-like [Benincasa hispida])

HSP 1 Score: 334.3 bits (856), Expect = 6.5e-88
Identity = 167/184 (90.76%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATA 60
           MKALVCSF QALLLSKPPPWNQR+RINDS ITK LSNFT  SRGQVQVNAKGF+GSP+TA
Sbjct: 1   MKALVCSFCQALLLSKPPPWNQRSRINDSTITKKLSNFTRISRGQVQVNAKGFSGSPSTA 60

Query: 61  KDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQ 120
           KDRE  AKKLSGQNN  EDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQ
Sbjct: 61  KDREIEAKKLSGQNNKKEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQ 120

Query: 121 NIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEED 180
           N+WDVPIWLPF TTFLTFGASTMGIAYGTLSTSLDPEKKGS+FGWEEAQKNWVEMWKEED
Sbjct: 121 NVWDVPIWLPFLTTFLTFGASTMGIAYGTLSTSLDPEKKGSVFGWEEAQKNWVEMWKEED 180

Query: 181 EASR 185
           E +R
Sbjct: 181 EEAR 184

[Close]

BLAST of Lsi05G011890 vs. NCBI nr
Match: XP_008439311.1 (PREDICTED: uncharacterized protein PAM68-like [Cucumis melo] >KAA0033723.1 putative Sterol regulatory element-binding protein cleavage-activating protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 1.8e-85
Identity = 168/185 (90.81%), Postives = 174/185 (94.05%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60
           MK+  CSFRQALLL KPPP NQRT  INDS ITKNLSNFTTTSRGQVQVNAKGFTGSPAT
Sbjct: 1   MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60

Query: 61  AKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKE 120
           AK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAFVG+PMAFGVTLLKIFQAIKE
Sbjct: 61  AKNRETAAKNLSGQ-NNNEDDDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAIKE 120

Query: 121 QNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE 180
           QN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEE
Sbjct: 121 QNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGWEEAQKNWVEMWKEE 180

Query: 181 DEASR 185
           DE SR
Sbjct: 181 DEVSR 184

[Close]

BLAST of Lsi05G011890 vs. NCBI nr
Match: TYK23016.1 (putative Sterol regulatory element-binding protein cleavage-activating protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 167/185 (90.27%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60
           MK+  CSFRQALLL KPPP NQRT  INDS ITKN SNFTTTSRGQVQVNAKGFTGSPAT
Sbjct: 1   MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNRSNFTTTSRGQVQVNAKGFTGSPAT 60

Query: 61  AKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKE 120
           AK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAFVG+PMAFGVTLLKIFQAIKE
Sbjct: 61  AKNRETAAKNLSGQ-NNNEDDDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAIKE 120

Query: 121 QNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE 180
           QN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEE
Sbjct: 121 QNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVVGWEEAQKNWVEMWKEE 180

Query: 181 DEASR 185
           DE SR
Sbjct: 181 DEVSR 184

[Close]

BLAST of Lsi05G011890 vs. NCBI nr
Match: XP_022140980.1 (uncharacterized protein PAM68-like [Momordica charantia])

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-78
Identity = 148/184 (80.43%), Postives = 167/184 (90.76%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATA 60
           MKAL+CS+RQAL LS+PPPW  R+RINDS ITKNL+N +  +RG V+VNAKGFTG+PATA
Sbjct: 1   MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATA 60

Query: 61  KDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQ 120
           K+RE AA+K+SGQNN++ DDDDEI EAV +RIITRILAFVGVPMAFGV LLKIF+ IKEQ
Sbjct: 61  KEREAAARKISGQNNSSNDDDDEISEAVSNRIITRILAFVGVPMAFGVALLKIFETIKEQ 120

Query: 121 NIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEED 180
            +WDVPIWLPF TTFLTFGAST+GIAYGTLS SLDPEK+GSLFGWEEAQKNWVEMWKEED
Sbjct: 121 KVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEED 180

Query: 181 EASR 185
           EASR
Sbjct: 181 EASR 184

[Close]

BLAST of Lsi05G011890 vs. NCBI nr
Match: XP_004150568.1 (uncharacterized protein PAM68-like [Cucumis sativus] >KGN61652.1 hypothetical protein Csa_006286 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 7.9e-78
Identity = 156/186 (83.87%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRTR-INDSIITKNLSNFT-TTSRGQVQVNAKGFTGSPA 60
           MK+L CSF QALLLS PPPWNQRT  IN S IT NL+NFT T SRGQVQVNAKGFT SP 
Sbjct: 1   MKSLACSFPQALLLSNPPPWNQRTLIINHSTITNNLTNFTPTLSRGQVQVNAKGFTNSPR 60

Query: 61  TAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIK 120
           TAK+RET A+      NNNEDDDDEIPEAVYSRIITRILAFVG+PMAFGVTLLKIFQAIK
Sbjct: 61  TAKNRETTAQ------NNNEDDDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAIK 120

Query: 121 EQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKE 180
           EQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKE
Sbjct: 121 EQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVLGWEEAQKNWVEMWKE 180

Query: 181 EDEASR 185
           EDE  R
Sbjct: 181 EDEGRR 180

[Close]

BLAST of Lsi05G011890 vs. TAIR 10
Match: AT5G52780.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-31
Identity = 74/180 (41.11%), Postives = 112/180 (62.22%), Query Frame = 0


Query: 1   MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNL-SNFTTTSRGQVQVNAKGFTGSPAT 60
           M+AL+CS R  L LS       +T+ ++    K L  N       ++    KGF  S  +
Sbjct: 1   MRALLCSHR-LLPLSSLSRTTVKTKSHN---PKTLYPNNKPRWESKLHAGPKGFQSSRTS 60

Query: 61  AKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKE 120
            K          G+ + + +DD  IP+ V+ R++ RI+  VG P+  GV +LK+ + +K+
Sbjct: 61  EK---------PGRPDPDPEDDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKD 120

Query: 121 QNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE 180
           +N+WDVP+W+P+ TT +TFG+S +GIAYG+LST+LDP K  SLFG +EA++NWVEMWKE+
Sbjct: 121 RNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWKED 167

[Close]

BLAST of Lsi05G011890 vs. TAIR 10
Match: AT4G19100.1 (Protein of unknown function (DUF3464) )

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-19
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 51  KGFTGSP-ATAKDRETAAKKLSGQNNNNEDDDDE----------IPEAVYSRIITRILAF 110
           KGF   P  T K ++      S +++++ED+DD+          IPE V +R+I+R+   
Sbjct: 68  KGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNRMISRMGFT 127

Query: 111 VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKK 170
           VG+P+  G+     F  +K     DVP W+PF  +F+ FG +  G++YG +S+S DP ++
Sbjct: 128 VGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLRE 187

Query: 171 GSLFGWEEAQKNWVEMWK 178
           GSL GW EA+KNW   W+
Sbjct: 188 GSLLGWNEAKKNWPVFWQ 205

The following BLAST results are available for this feature:

BLAST of Lsi05G011890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTD9	2.9e-30	41.11	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ...	[more]
O49668	4.3e-18	36.96	Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1	[more]

BLAST of Lsi05G011890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STB5	8.5e-86	90.81	Putative Sterol regulatory element-binding protein cleavage-activating protein O...	[more]
A0A1S3AZ57	8.5e-86	90.81	uncharacterized protein PAM68-like OS=Cucumis melo OX=3656 GN=LOC103484134 PE=4 ...	[more]
A0A5D3DHC5	5.5e-85	90.27	Putative Sterol regulatory element-binding protein cleavage-activating protein O...	[more]
A0A6J1CGP3	1.0e-78	80.43	uncharacterized protein PAM68-like OS=Momordica charantia OX=3673 GN=LOC11101150...	[more]
A0A0A0LLM4	3.8e-78	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G213970 PE=4 SV=1	[more]

BLAST of Lsi05G011890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877436.1	6.5e-88	90.76	uncharacterized protein PAM68-like [Benincasa hispida]	[more]
XP_008439311.1	1.8e-85	90.81	PREDICTED: uncharacterized protein PAM68-like [Cucumis melo] >KAA0033723.1 putat...	[more]
TYK23016.1	1.1e-84	90.27	putative Sterol regulatory element-binding protein cleavage-activating protein [...	[more]
XP_022140980.1	2.1e-78	80.43	uncharacterized protein PAM68-like [Momordica charantia]	[more]
XP_004150568.1	7.9e-78	83.87	uncharacterized protein PAM68-like [Cucumis sativus] >KGN61652.1 hypothetical pr...	[more]

BLAST of Lsi05G011890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52780.1	2.0e-31	41.11	Protein of unknown function (DUF3464)	[more]
AT4G19100.1	3.1e-19	36.96	Protein of unknown function (DUF3464)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	PAM68-like	PFAM	PF11947	DUF3464	coord: 56..178 e-value: 2.1E-40 score: 137.9
IPR021855	PAM68-like	PANTHER	PTHR34575	PROTEIN PAM68, CHLOROPLASTIC	coord: 1..182
None	No IPR available	PANTHER	PTHR34575:SF6	EXPRESSED PROTEIN	coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G011890.1	Lsi05G011890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane