Lsi05G011840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G011840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr05: 19754060 .. 19757384 (-)
RNA-Seq Expression	Lsi05G011840
Synteny	Lsi05G011840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGTTTAAAATTGTAGTGCATGAACAAAATTAAACTACTTTTTAATGCCAAAATATAGGATAAAAGGCTTAAGACATGAACTTTGAAGTTGATGTCTATTTGGTATTTCAATCTTAAAAATTCTCAAATAAGCAATTAAATTCTAATTATGTGTCTATTAAATTATTCATTCATCAATATTTTTTTGAATTTTACAAATCTTGAACATCAAATATAAAAAATACAAATTTAGTCTACATAGTTTTAGAAATTAGAGTATCTATCATTATATGGTTTGATAAAATCAAATAAATAATCCATACTATTTATGAGACTTTTATAAAAAAACACACTCTGGACTAAAAAAATAATAAATTGTAATAACATGCATTTTAACCCTCAAATAATTGAAAATAATTATTTATTAAGGTTATTTTCAAATATAAAAAATGAGTCAAACTATTTAAATATAGAAAAATTTTACTGTCTATCAGCGATAGACGGCGATATAATTCTATCACTTGAGCGATAGACAGAGCAATAGAATTTTATAGCGGTTTATGACTAATAGATAGTGAAAGTTTCTATATTTATAAATAGTTTGATATTTTTTATGTTTATAGTAATTTTTCTATTTATTACTTTATATATATTTATTTATTTATCTTACACATTTCTCACATATCCCTTTTTTTAGACGTCTCACATATCCCTTCTGATGATACAAGTTTGGCTCATTTTGGCTTAAAACCTTCACAAAAGTTATGGAGAAAAATAAAATAAAAGGATAGAAAAATTGGAACTGCAAATCATTTTCACTTCTTTCTTCAATGACTCACTCTATAGCCCAAGCATCGCTTTCGTCCTCCTCGGCTTCCTACCGGTAAAAACTCTCCCCTTTTCTCGTTCTATCTATCTTTCTCAACGCTTGTGTTTGGTTACTTAGAAAATTTCAGAAAGAAGACGAGAAATTTGTTCTTAGATACGAAGTATGTTTTGTGTTAGATGATGAAATTCACTCTTCTTTCCTTGAATAGCGATTTCGTGCTTCTGCCTGGTTCTTCCTCCTAAGCTCTTAGAGTTGAAAATTTGGATTTCAATTTATCGAAATCTATTGATATTTGTTTTCATTTGCTGGCTCAGGATGCTTACTTTGATTTACTCTTTTCCAGTCATATCCAAAAGGATAGAATCTGTTAAATTTTCCTGGTGTGCAAGCAGTTCAGTTGTAAGTCTTCTCGTCAATTGGTTTGCTGCTAGCGTAGCGATAATGAAACTTAATCAGAGTTAATACTTTCAACTTCGTTTATTTTACACTTTACAGTGGCGTGTTCCTTTCGATTTTGAAGAAGCAATGTCTGATAAATGGAAATTGGATTTCTGTATCGCAATTGTTAGACAGATTCTGACCTTTTCATTCCGTTCTTACCCAAGAATTTCGACTTATTTGTAGGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTCTGGAAAACCAAAAAGAGAATTGGGACGATATCCAAGGCAGCAAAGCTTGTTGATTGTGTAAGCTTTCTTGTCATTGTCTCTAATCCTATACCCTCCATCCACAAAAAGAAGGGTGCCATTATGCCTATTCAAATTGGATTCTCACAGTAGAAAATCTGTTTTTTCATTTTGATTCAGGGTATATTTGGGATGCATTTTGAGACTTTTGGAAGAATCATTTTAAGTGCTTTTAAGATTCAGGATTTTAATTACTTTTGACAGCATAACCAAACATCAAGCAATTTTTAAATAGTGCTTTTAATTTTCCAAAAAAAAAAATTTAATACCAAAGTCACTCTTCATATAATGCAATCACTTTTTGTTTCTTGGGAGCACTTGGGATGGTGCTACTTTTGAACTCGTCATTTTCCAGATCGACATTTTTAAGTATTGAGTTCTCATTTTAGGTCAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGAGCTCTTGATTCCTTCATTGCATGGGAACTAGAGTTTCCTCTTATTACTGTAAAGAAAGCCTTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGGTACATTTCCTATGTAGGACTTTCTTACATGCTTCTTTCGTGTCCTTTCTTGCTCTGCCCTTTTGTCCGGAGAATGTTTCCGACCAAATGAGTCAATCAAAATGGGTGTACTATTGTAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGAAGCTATTTCACGTTATTAAATGCCTTAGCTGAAGATGGAAGACTTGATGAAGCAGAAGAGCTTTGGAACAAATTGTTTTATCAGCATTTGGAGAGCATGCCTCGCATATTCTTTCATAAAATGATATCCCTGTACTACGATCGGGCAATGCACGACAAGTTATTTGAGGTATTCAGTTTTATTGCTAAAGAAGTAGTTTCAACTGCATCAGTCACAAAGCTCTAACCATTCCTTCCCCTCCAAATTGATTAAAAAAAGTGTTAAAAACTTAAAAAGTTATGAAGGCTATGATACATGGTGCAGCAGATATATTTTAGGCAATAAATCTCTAAGCATTGCTCCAAGTTATTCTTCAGACTCACGATTGAAAAAGGAAAAAGAAGAGATTAAAGGTTATATTACATGTTGCTTGGCATATAGTTAAAGCTTACAACTTTCTTGTTACGATGAGCTATTTTATATAATTCTTAGTTCAATCATATTGATTTCATGGATACTGAAATTTAACTATGATTGTCCTTAGGTATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAATATGGCAATTGTCACCATGGTTGGAAATGTCTTCCATGAGTTGGGTATGTTCGATAAATATGAAAAGCTGATGAAGAAATATCCCCCACCAAAATGGGAATATCGTTACGTCAAAGGAAAGCGCGTAAGAATACGATCAAAGTATCTGTATGAAAATGGTAATTCCAACAATGGTTTAAGTGAGCATGACAAATTGGAACATAGTTCAACGAAGCTGTTGGAGGAAGCTGAAATAACTTCCGAGGATTCCAGTCTTGAAGATGATGAGGAAATGAGCGAAGATCCAGTTGGAATTCTGGAAGATGAATGTATTTCAAAAGAATCCAATTTTGAGCATGATTTCATGGGGTTTGGGCAATTGTAAATATATATACATATTGTAGTTCCCAGTTGGAATTCGTCATAGTGTAGACTTTTATTTTTTTTTTAATTATTATTTTGTAATTTGAACAGATGGGATGACGTATTGTGATCATAGAGCCTATTCTCTTTATTTCGGCCTTCAATATTATAATGCCCGATTCAAGATA

mRNA sequence

ATGAGTCCCAAGCATCGCTTTCGTCCTCCTCGGCTTCCTACCGCGATTTCGTGCTTCTGCCTGGTTCTTCCTCCTAAGCTCTTAGAGTTGAAAATTTGGATTTCAATTTATCGAAATCTATTGATATTTGTTTTCATTTGCTGGCTCAGGATGCTTACTTTGATTTACTCTTTTCCAGTCATATCCAAAAGGATAGAATCTGTTAAATTTTCCTGGTGTGCAAGCAGTTCAGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTCTGGAAAACCAAAAAGAGAATTGGGACGATATCCAAGGCAGCAAAGCTTGTTGATTGTGTCAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGAGCTCTTGATTCCTTCATTGCATGGGAACTAGAGTTTCCTCTTATTACTGTAAAGAAAGCCTTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGAAGCTATTTCACGTTATTAAATGCCTTAGCTGAAGATGGAAGACTTGATGAAGCAGAAGAGCTTTGGAACAAATTGTTTTATCAGCATTTGGAGAGCATGCCTCGCATATTCTTTCATAAAATGATATCCCTGTACTACGATCGGGCAATGCACGACAAGTTATTTGAGTTTCAACTGCATCAGTCACAAAGCTCTAACCATTCCTTCCCCTCCAAATTGATTAAAAAAAGTGTTAAAAACTTAAAAAGTTATGAAGGCTATGATACATGGTGCAGCAGATATATTTTAGGCAATAAATCTCTAAGCATTGCTCCAAGTTATTCTTCAGACTCACGATTGAAAAAGGAAAAAGAAGAGATTAAAGTTAAAGCTTACAACTTTCTTGTATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAATATGGCAATTGTCACCATGGTTGGAAATGTCTTCCATGAGTTGGGTATGTTCGATAAATATGAAAAGCTGATGAAGAAATATCCCCCACCAAAATGGGAATATCGTTACGTCAAAGGAAAGCGCGTAAGAATACGATCAAAGTATCTGTATGAAAATGGTAATTCCAACAATGGTTTAAGTGAGCATGACAAATTGGAACATAGTTCAACGAAGCTGTTGGAGGAAGCTGAAATAACTTCCGAGGATTCCAGTCTTGAAGATGATGAGGAAATGAGCGAAGATCCAGTTGGAATTCTGGAAGATGAATGTATTTCAAAAGAATCCAATTTTGAGCATGATTTCATGGGGTTTGGGCAATTGTAAATATATATACATATTGTAGTTCCCAGTTGGAATTCGTCATAGTGTAGACTTTTATTTTTTTTTTAATTATTATTTTGTAATTTGAACAGATGGGATGACGTATTGTGATCATAGAGCCTATTCTCTTTATTTCGGCCTTCAATATTATAATGCCCGATTCAAGATA

Coding sequence (CDS)

ATGAGTCCCAAGCATCGCTTTCGTCCTCCTCGGCTTCCTACCGCGATTTCGTGCTTCTGCCTGGTTCTTCCTCCTAAGCTCTTAGAGTTGAAAATTTGGATTTCAATTTATCGAAATCTATTGATATTTGTTTTCATTTGCTGGCTCAGGATGCTTACTTTGATTTACTCTTTTCCAGTCATATCCAAAAGGATAGAATCTGTTAAATTTTCCTGGTGTGCAAGCAGTTCAGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTCTGGAAAACCAAAAAGAGAATTGGGACGATATCCAAGGCAGCAAAGCTTGTTGATTGTGTCAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGAGCTCTTGATTCCTTCATTGCATGGGAACTAGAGTTTCCTCTTATTACTGTAAAGAAAGCCTTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGAAGCTATTTCACGTTATTAAATGCCTTAGCTGAAGATGGAAGACTTGATGAAGCAGAAGAGCTTTGGAACAAATTGTTTTATCAGCATTTGGAGAGCATGCCTCGCATATTCTTTCATAAAATGATATCCCTGTACTACGATCGGGCAATGCACGACAAGTTATTTGAGTTTCAACTGCATCAGTCACAAAGCTCTAACCATTCCTTCCCCTCCAAATTGATTAAAAAAAGTGTTAAAAACTTAAAAAGTTATGAAGGCTATGATACATGGTGCAGCAGATATATTTTAGGCAATAAATCTCTAAGCATTGCTCCAAGTTATTCTTCAGACTCACGATTGAAAAAGGAAAAAGAAGAGATTAAAGTTAAAGCTTACAACTTTCTTGTATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAATATGGCAATTGTCACCATGGTTGGAAATGTCTTCCATGAGTTGGGTATGTTCGATAAATATGAAAAGCTGATGAAGAAATATCCCCCACCAAAATGGGAATATCGTTACGTCAAAGGAAAGCGCGTAAGAATACGATCAAAGTATCTGTATGAAAATGGTAATTCCAACAATGGTTTAAGTGAGCATGACAAATTGGAACATAGTTCAACGAAGCTGTTGGAGGAAGCTGAAATAACTTCCGAGGATTCCAGTCTTGAAGATGATGAGGAAATGAGCGAAGATCCAGTTGGAATTCTGGAAGATGAATGTATTTCAAAAGAATCCAATTTTGAGCATGATTTCATGGGGTTTGGGCAATTGTAA

Protein sequence

MSPKHRFRPPRLPTAISCFCLVLPPKLLELKIWISIYRNLLIFVFICWLRMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDKLFEFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRLKKEKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKWEYRYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDEEMSEDPVGILEDECISKESNFEHDFMGFGQL

Homology

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BLAST of Lsi05G011840 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 3.7e-92
Identity = 196/381 (51.44%), Postives = 245/381 (64.30%), Query Frame = 0


Query: 51  MLTLIYSFP--VISKRIESVK-FSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 110
           ML+L YS P  ++  R  S K F+   ++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 111 LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 170
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 171 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDK 230
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY R MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 231 LFEFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRL 290
           LFE                                                         
Sbjct: 181 LFE--------------------------------------------------------- 240

Query: 291 KKEKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKW 350
                          VFADMEELGV+PN+AIV+MVG VF +L M DKYEKLMKKYPPP+W
Sbjct: 241 ---------------VFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQW 300

Query: 351 EYRYVKGKRVRIRSKYLYENGNSNNGL-SEHDKLEHSSTKLLEEAEITSEDSSLEDDEEM 410
           E+RY+KG+RV++++K L E      GL S+ DK+++     +E  E   ED  L ++EE 
Sbjct: 301 EFRYIKGRRVKVKAKQLNELSEGEGGLSSDEDKIDNE----IESEEEDGED--LSEEEED 303

Query: 411 SEDPVGILEDECISKESNFEH 428
            ++ +G  + +  S+E + +H
Sbjct: 361 EKELLGGSQGQITSREPSLDH 303

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BLAST of Lsi05G011840 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-33
Identity = 76/180 (42.22%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 92  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 151
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 152 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIF 211
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN + + H  S+PR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 212 FHKMISLYYDRAMHDKLFEF--QLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYI 270
           F +MI+LY    +HDK+ E    + + + S     ++ + ++ + L   E       RY+
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYL 264

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BLAST of Lsi05G011840 vs. ExPASy TrEMBL
Match: A0A1S4DTK8 (pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 1.3e-153
Identity = 296/409 (72.37%), Postives = 313/409 (76.53%), Query Frame = 0


Query: 27  LLELKIWISIYRNLLIFVFICWLRMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPR 86
           LLEL+I ISI+RNLLIF  ICW RMLTL+Y+FPV SKRIESV FSWC SSSVVCAAKGPR
Sbjct: 18  LLELEILISIHRNLLIFDLICWFRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPR 77

Query: 87  PRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALK 146
           PRYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALK
Sbjct: 78  PRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALK 137

Query: 147 TLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLES 206
           TLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLF Q+LES
Sbjct: 138 TLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLES 197

Query: 207 MPRIFFHKMISLYYDRAMHDKLFEFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCS 266
           MPRIFFHKMISLYYDRAMHDKLFE                                    
Sbjct: 198 MPRIFFHKMISLYYDRAMHDKLFE------------------------------------ 257

Query: 267 RYILGNKSLSIAPSYSSDSRLKKEKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVF 326
                                               VFADMEELGVQPNMAIVT VGN+F
Sbjct: 258 ------------------------------------VFADMEELGVQPNMAIVTKVGNIF 317

Query: 327 HELGMFDKYEKLMKKYPPPKWEYRYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTK 386
            ELGM DKYEKLMKKYPPPKWEYRY+KGKRV+IR+KYL ENGNS NGLSE +K+EHSST 
Sbjct: 318 QELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTN 354

Query: 387 LLEEAEITSEDSSLEDDEEMSEDPVGILEDECISKESNFEHDFMGFGQL 436
            L+EAEITSEDSSLEDDEE+ +DP  ILEDE +  +SNFEHDFMG GQL
Sbjct: 378 SLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 354

[Close]

BLAST of Lsi05G011840 vs. ExPASy TrEMBL
Match: A0A0A0L6Q9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 6.4e-148
Identity = 284/391 (72.63%), Postives = 299/391 (76.47%), Query Frame = 0


Query: 45  FICWLRMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISK 104
           F+   RMLTL+Y+FPV SKRIESV FSWC SSSVVCAAKGPRPRYPRVWKTKKRIGTISK
Sbjct: 20  FLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISK 79

Query: 105 AAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWM 164
           AAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWM
Sbjct: 80  AAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWM 139

Query: 165 LSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAM 224
           LSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLF QHLES+PRIFFHKMISLYYD+AM
Sbjct: 140 LSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAM 199

Query: 225 HDKLFEFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSD 284
           HDKLFE                                                      
Sbjct: 200 HDKLFE------------------------------------------------------ 259

Query: 285 SRLKKEKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPP 344
                             VFADMEELGVQPNMAIVT VGNVF ELGM DKY+KLMKKYPP
Sbjct: 260 ------------------VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 319

Query: 345 PKWEYRYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDE 404
           PKWEYRY+KGKRV+IR+KYL ENGNSNNGLSEH K+EHSST  ++EAEITSEDSSLEDDE
Sbjct: 320 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 338

Query: 405 EMSEDPVGILEDECISKESNFEHDFMGFGQL 436
           +MSEDP  ILEDE +  +SNFEHDFMG GQL
Sbjct: 380 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of Lsi05G011840 vs. ExPASy TrEMBL
Match: A0A5D3DHA7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G001120 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 1.3e-145
Identity = 279/386 (72.28%), Postives = 294/386 (76.17%), Query Frame = 0


Query: 50  RMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLV 109
           RMLTL+Y+FPV SKRIESV FSWC SSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLV
Sbjct: 18  RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLV 77

Query: 110 DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 169
           DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ
Sbjct: 78  DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 137

Query: 170 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDKLF 229
           GRTMGSYFTLLNAL EDGRLDEAEELWNKLF Q+LESMPRIFFHKMISLYYDRAMHDKLF
Sbjct: 138 GRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLF 197

Query: 230 EFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRLKK 289
           E                                                           
Sbjct: 198 E----------------------------------------------------------- 257

Query: 290 EKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKWEY 349
                        VFADMEELGVQPNMAIVT VGN+F ELGM DKYEKLMKKYPPPKWEY
Sbjct: 258 -------------VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEY 317

Query: 350 RYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDEEMSED 409
           RY+KGKRV+IR+KYL ENGNS NGLSE +K+EHSST  L+EAEITSEDSSLEDDEE+ +D
Sbjct: 318 RYIKGKRVKIRTKYLSENGNSKNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKD 331

Query: 410 PVGILEDECISKESNFEHDFMGFGQL 436
           P  ILEDE +  +SNFEHDFMG GQL
Sbjct: 378 PDEILEDEHMWSKSNFEHDFMGLGQL 331

[Close]

BLAST of Lsi05G011840 vs. ExPASy TrEMBL
Match: A0A5A7SS06 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001830 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 2.3e-145
Identity = 279/386 (72.28%), Postives = 294/386 (76.17%), Query Frame = 0


Query: 50  RMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLV 109
           RMLTL+Y+FPV SKRIESV FSWC SSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLV
Sbjct: 18  RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLV 77

Query: 110 DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 169
           DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ
Sbjct: 78  DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 137

Query: 170 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDKLF 229
           GRTMGSYFTLLNAL EDGRLDEAEELWNKLF Q+LESMPRIFFHKMISLYYDRAMHDKLF
Sbjct: 138 GRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLF 197

Query: 230 EFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRLKK 289
           E                                                           
Sbjct: 198 E----------------------------------------------------------- 257

Query: 290 EKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKWEY 349
                        VFADMEELGVQPNMAIVT VGN+F ELGM DKYEKLMKKYPPPKWEY
Sbjct: 258 -------------VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEY 317

Query: 350 RYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDEEMSED 409
           RY+KGKRV+IR+KYL ENGNS NGLSE +K+EHSST  L+EAEITSEDSSLEDDEE+ +D
Sbjct: 318 RYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKD 331

Query: 410 PVGILEDECISKESNFEHDFMGFGQL 436
           P  ILEDE +  +SNFEHDFMG GQL
Sbjct: 378 PDEILEDEHMWSKSNFEHDFMGLGQL 331

[Close]

BLAST of Lsi05G011840 vs. ExPASy TrEMBL
Match: A0A1S3AY30 (pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484127 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 2.3e-145
Identity = 279/386 (72.28%), Postives = 294/386 (76.17%), Query Frame = 0


Query: 50  RMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLV 109
           RMLTL+Y+FPV SKRIESV FSWC SSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLV
Sbjct: 25  RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLV 84

Query: 110 DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 169
           DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ
Sbjct: 85  DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 144

Query: 170 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDKLF 229
           GRTMGSYFTLLNAL EDGRLDEAEELWNKLF Q+LESMPRIFFHKMISLYYDRAMHDKLF
Sbjct: 145 GRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLF 204

Query: 230 EFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRLKK 289
           E                                                           
Sbjct: 205 E----------------------------------------------------------- 264

Query: 290 EKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKWEY 349
                        VFADMEELGVQPNMAIVT VGN+F ELGM DKYEKLMKKYPPPKWEY
Sbjct: 265 -------------VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEY 324

Query: 350 RYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDEEMSED 409
           RY+KGKRV+IR+KYL ENGNS NGLSE +K+EHSST  L+EAEITSEDSSLEDDEE+ +D
Sbjct: 325 RYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKD 338

Query: 410 PVGILEDECISKESNFEHDFMGFGQL 436
           P  ILEDE +  +SNFEHDFMG GQL
Sbjct: 385 PDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of Lsi05G011840 vs. NCBI nr
Match: XP_038888232.1 (pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Benincasa hispida])

HSP 1 Score: 557.8 bits (1436), Expect = 8.5e-155
Identity = 294/386 (76.17%), Postives = 303/386 (78.50%), Query Frame = 0


Query: 50  RMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLV 109
           RMLTLIYSFPVISKRIESV FSWCASSSVVCAAKGPRPRYPRVWKTKKRIGT+SKAAKLV
Sbjct: 18  RMLTLIYSFPVISKRIESVNFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTVSKAAKLV 77

Query: 110 DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 169
           DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL+TLENQREWKRIIQLTKWMLSKGQ
Sbjct: 78  DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALQTLENQREWKRIIQLTKWMLSKGQ 137

Query: 170 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDKLF 229
           GRTMGSYFTLLNALAEDGRLDEAEELWNKLF QHLESMPRIFFHKMISLYYDRAMHDKLF
Sbjct: 138 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYDRAMHDKLF 197

Query: 230 EFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRLKK 289
           E                                                           
Sbjct: 198 E----------------------------------------------------------- 257

Query: 290 EKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKWEY 349
                        VFADMEELGVQPNM IVTMVGNVFHELGM DKYEKLMKKYPPPKWEY
Sbjct: 258 -------------VFADMEELGVQPNMEIVTMVGNVFHELGMLDKYEKLMKKYPPPKWEY 317

Query: 350 RYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDEEMSED 409
           RY+KGKRVRIRSKYLYENGN NN LS+HDK+EHSSTKLLEEAEITSED++LEDD EMSED
Sbjct: 318 RYIKGKRVRIRSKYLYENGNPNNSLSKHDKMEHSSTKLLEEAEITSEDTNLEDDVEMSED 331

Query: 410 PVGILEDECISKESNFEHDFMGFGQL 436
           P  I +DEC+SKE NFEHDFMGFGQL
Sbjct: 378 PNEIRKDECMSKEYNFEHDFMGFGQL 331

[Close]

BLAST of Lsi05G011840 vs. NCBI nr
Match: XP_038888233.1 (pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Benincasa hispida])

HSP 1 Score: 555.4 bits (1430), Expect = 4.2e-154
Identity = 293/385 (76.10%), Postives = 302/385 (78.44%), Query Frame = 0


Query: 51  MLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 110
           MLTLIYSFPVISKRIESV FSWCASSSVVCAAKGPRPRYPRVWKTKKRIGT+SKAAKLVD
Sbjct: 1   MLTLIYSFPVISKRIESVNFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTVSKAAKLVD 60

Query: 111 CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 170
           CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKAL+TLENQREWKRIIQLTKWMLSKGQG
Sbjct: 61  CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALQTLENQREWKRIIQLTKWMLSKGQG 120

Query: 171 RTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDKLFE 230
           RTMGSYFTLLNALAEDGRLDEAEELWNKLF QHLESMPRIFFHKMISLYYDRAMHDKLFE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYDRAMHDKLFE 180

Query: 231 FQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRLKKE 290
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 291 KEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKWEYR 350
                       VFADMEELGVQPNM IVTMVGNVFHELGM DKYEKLMKKYPPPKWEYR
Sbjct: 241 ------------VFADMEELGVQPNMEIVTMVGNVFHELGMLDKYEKLMKKYPPPKWEYR 300

Query: 351 YVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDEEMSEDP 410
           Y+KGKRVRIRSKYLYENGN NN LS+HDK+EHSSTKLLEEAEITSED++LEDD EMSEDP
Sbjct: 301 YIKGKRVRIRSKYLYENGNPNNSLSKHDKMEHSSTKLLEEAEITSEDTNLEDDVEMSEDP 313

Query: 411 VGILEDECISKESNFEHDFMGFGQL 436
             I +DEC+SKE NFEHDFMGFGQL
Sbjct: 361 NEIRKDECMSKEYNFEHDFMGFGQL 313

[Close]

BLAST of Lsi05G011840 vs. NCBI nr
Match: XP_016899030.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cucumis melo])

HSP 1 Score: 552.7 bits (1423), Expect = 2.7e-153
Identity = 296/409 (72.37%), Postives = 313/409 (76.53%), Query Frame = 0


Query: 27  LLELKIWISIYRNLLIFVFICWLRMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPR 86
           LLEL+I ISI+RNLLIF  ICW RMLTL+Y+FPV SKRIESV FSWC SSSVVCAAKGPR
Sbjct: 18  LLELEILISIHRNLLIFDLICWFRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPR 77

Query: 87  PRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALK 146
           PRYPRVWKT+KRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALK
Sbjct: 78  PRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALK 137

Query: 147 TLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLES 206
           TLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNAL EDGRLDEAEELWNKLF Q+LES
Sbjct: 138 TLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLES 197

Query: 207 MPRIFFHKMISLYYDRAMHDKLFEFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCS 266
           MPRIFFHKMISLYYDRAMHDKLFE                                    
Sbjct: 198 MPRIFFHKMISLYYDRAMHDKLFE------------------------------------ 257

Query: 267 RYILGNKSLSIAPSYSSDSRLKKEKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVF 326
                                               VFADMEELGVQPNMAIVT VGN+F
Sbjct: 258 ------------------------------------VFADMEELGVQPNMAIVTKVGNIF 317

Query: 327 HELGMFDKYEKLMKKYPPPKWEYRYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTK 386
            ELGM DKYEKLMKKYPPPKWEYRY+KGKRV+IR+KYL ENGNS NGLSE +K+EHSST 
Sbjct: 318 QELGMLDKYEKLMKKYPPPKWEYRYIKGKRVKIRTKYLSENGNSMNGLSEQNKMEHSSTN 354

Query: 387 LLEEAEITSEDSSLEDDEEMSEDPVGILEDECISKESNFEHDFMGFGQL 436
            L+EAEITSEDSSLEDDEE+ +DP  ILEDE +  +SNFEHDFMG GQL
Sbjct: 378 SLDEAEITSEDSSLEDDEEIGKDPDEILEDEHMWSKSNFEHDFMGLGQL 354

[Close]

BLAST of Lsi05G011840 vs. NCBI nr
Match: XP_004140747.2 (pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN57423.1 hypothetical protein Csa_010957 [Cucumis sativus])

HSP 1 Score: 533.9 bits (1374), Expect = 1.3e-147
Identity = 284/391 (72.63%), Postives = 299/391 (76.47%), Query Frame = 0


Query: 45  FICWLRMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISK 104
           F+   RMLTL+Y+FPV SKRIESV FSWC SSSVVCAAKGPRPRYPRVWKTKKRIGTISK
Sbjct: 20  FLASYRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISK 79

Query: 105 AAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWM 164
           AAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWM
Sbjct: 80  AAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWM 139

Query: 165 LSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAM 224
           LSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLF QHLES+PRIFFHKMISLYYD+AM
Sbjct: 140 LSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAM 199

Query: 225 HDKLFEFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSD 284
           HDKLFE                                                      
Sbjct: 200 HDKLFE------------------------------------------------------ 259

Query: 285 SRLKKEKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPP 344
                             VFADMEELGVQPNMAIVT VGNVF ELGM DKY+KLMKKYPP
Sbjct: 260 ------------------VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPP 319

Query: 345 PKWEYRYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDE 404
           PKWEYRY+KGKRV+IR+KYL ENGNSNNGLSEH K+EHSST  ++EAEITSEDSSLEDDE
Sbjct: 320 PKWEYRYIKGKRVKIRAKYLSENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 338

Query: 405 EMSEDPVGILEDECISKESNFEHDFMGFGQL 436
           +MSEDP  ILEDE +  +SNFEHDFMG GQL
Sbjct: 380 DMSEDPDEILEDEHMWSKSNFEHDFMGLGQL 338

[Close]

BLAST of Lsi05G011840 vs. NCBI nr
Match: TYK23004.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 526.2 bits (1354), Expect = 2.7e-145
Identity = 279/386 (72.28%), Postives = 294/386 (76.17%), Query Frame = 0


Query: 50  RMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLV 109
           RMLTL+Y+FPV SKRIESV FSWC SSSVVCAAKGPRPRYPRVWKT+KRIGTISKAAKLV
Sbjct: 18  RMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLV 77

Query: 110 DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 169
           DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ
Sbjct: 78  DCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQ 137

Query: 170 GRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDKLF 229
           GRTMGSYFTLLNAL EDGRLDEAEELWNKLF Q+LESMPRIFFHKMISLYYDRAMHDKLF
Sbjct: 138 GRTMGSYFTLLNALVEDGRLDEAEELWNKLFSQYLESMPRIFFHKMISLYYDRAMHDKLF 197

Query: 230 EFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRLKK 289
           E                                                           
Sbjct: 198 E----------------------------------------------------------- 257

Query: 290 EKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKWEY 349
                        VFADMEELGVQPNMAIVT VGN+F ELGM DKYEKLMKKYPPPKWEY
Sbjct: 258 -------------VFADMEELGVQPNMAIVTKVGNIFQELGMLDKYEKLMKKYPPPKWEY 317

Query: 350 RYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDEEMSED 409
           RY+KGKRV+IR+KYL ENGNS NGLSE +K+EHSST  L+EAEITSEDSSLEDDEE+ +D
Sbjct: 318 RYIKGKRVKIRTKYLSENGNSKNGLSEQNKMEHSSTNSLDEAEITSEDSSLEDDEEIGKD 331

Query: 410 PVGILEDECISKESNFEHDFMGFGQL 436
           P  ILEDE +  +SNFEHDFMG GQL
Sbjct: 378 PDEILEDEHMWSKSNFEHDFMGLGQL 331

[Close]

BLAST of Lsi05G011840 vs. TAIR 10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 340.1 bits (871), Expect = 2.6e-93
Identity = 196/381 (51.44%), Postives = 245/381 (64.30%), Query Frame = 0


Query: 51  MLTLIYSFP--VISKRIESVK-FSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAK 110
           ML+L YS P  ++  R  S K F+   ++ VVCAA+GPRPR PRVWKT+KRIGTISKAAK
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 111 LVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSK 170
           ++ C+KGLSNVKEEVYGALDSFIAWELEFPL+ VKKAL  LE+++EWK+IIQ+TKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 171 GQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDK 230
           GQGRTMG+YF+LLNALAED RLDEAEELWNKLF +HLE  PR FF+KMIS+YY R MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 231 LFEFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRL 290
           LFE                                                         
Sbjct: 181 LFE--------------------------------------------------------- 240

Query: 291 KKEKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKW 350
                          VFADMEELGV+PN+AIV+MVG VF +L M DKYEKLMKKYPPP+W
Sbjct: 241 ---------------VFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQW 300

Query: 351 EYRYVKGKRVRIRSKYLYENGNSNNGL-SEHDKLEHSSTKLLEEAEITSEDSSLEDDEEM 410
           E+RY+KG+RV++++K L E      GL S+ DK+++     +E  E   ED  L ++EE 
Sbjct: 301 EFRYIKGRRVKVKAKQLNELSEGEGGLSSDEDKIDNE----IESEEEDGED--LSEEEED 303

Query: 411 SEDPVGILEDECISKESNFEH 428
            ++ +G  + +  S+E + +H
Sbjct: 361 EKELLGGSQGQITSREPSLDH 303

[Close]

BLAST of Lsi05G011840 vs. TAIR 10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-34
Identity = 76/180 (42.22%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 92  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 151
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 152 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIF 211
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN + + H  S+PR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 212 FHKMISLYYDRAMHDKLFEF--QLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYI 270
           F +MI+LY    +HDK+ E    + + + S     ++ + ++ + L   E       RY+
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYL 264

[Close]

BLAST of Lsi05G011840 vs. TAIR 10
Match: AT4G18975.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-34
Identity = 76/180 (42.22%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 92  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 151
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 58  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 117

Query: 152 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIF 211
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN + + H  S+PR  
Sbjct: 118 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 177

Query: 212 FHKMISLYYDRAMHDKLFEF--QLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYI 270
           F +MI+LY    +HDK+ E    + + + S     ++ + ++ + L   E       RY+
Sbjct: 178 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYL 237

[Close]

BLAST of Lsi05G011840 vs. TAIR 10
Match: AT4G18975.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-34
Identity = 76/180 (42.22%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 92  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 151
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 152 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIF 211
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN + + H  S+PR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 212 FHKMISLYYDRAMHDKLFEF--QLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYI 270
           F +MI+LY    +HDK+ E    + + + S     ++ + ++ + L   E       RY+
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYL 264

[Close]

BLAST of Lsi05G011840 vs. TAIR 10
Match: AT4G18975.4 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-34
Identity = 76/180 (42.22%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 92  VWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQ 151
           +WK     G+  KA  LV  + GL N KE VYGAL+ ++AWE+EFP+I   KAL+ L  +
Sbjct: 85  LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKR 144

Query: 152 REWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIF 211
            +W R+IQL KWMLSKGQG TMG+Y  LL A   D R DEAE LWN + + H  S+PR  
Sbjct: 145 SQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRL 204

Query: 212 FHKMISLYYDRAMHDKLFEF--QLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYI 270
           F +MI+LY    +HDK+ E    + + + S     ++ + ++ + L   E       RY+
Sbjct: 205 FARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYL 264

The following BLAST results are available for this feature:

BLAST of Lsi05G011840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG95	3.7e-92	51.44	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]
Q2V3H0	2.3e-33	42.22	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]

BLAST of Lsi05G011840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DTK8	1.3e-153	72.37	pentatricopeptide repeat-containing protein At4g21190 isoform X1 OS=Cucumis melo...	[more]
A0A0A0L6Q9	6.4e-148	72.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184050 PE=4 SV=1	[more]
A0A5D3DHA7	1.3e-145	72.28	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7SS06	2.3e-145	72.28	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3AY30	2.3e-145	72.28	pentatricopeptide repeat-containing protein At4g21190 isoform X2 OS=Cucumis melo...	[more]

BLAST of Lsi05G011840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888232.1	8.5e-155	76.17	pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Benincasa hisp...	[more]
XP_038888233.1	4.2e-154	76.10	pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Benincasa hisp...	[more]
XP_016899030.1	2.7e-153	72.37	PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X1 [Cuc...	[more]
XP_004140747.2	1.3e-147	72.63	pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus] >KGN5742...	[more]
TYK23004.1	2.7e-145	72.28	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Lsi05G011840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21190.1	2.6e-93	51.44	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.1	1.6e-34	42.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.2	1.6e-34	42.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.3	1.6e-34	42.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.4	1.6e-34	42.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 103..239 e-value: 5.7E-8 score: 34.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 394..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 391..410
None	No IPR available	PANTHER	PTHR46782:SF1	OS01G0757700 PROTEIN	coord: 52..230 coord: 301..407
IPR044646	Pentatricopeptide repeat-containing protein EMB1417-like	PANTHER	PTHR46782	OS01G0757700 PROTEIN	coord: 301..407
IPR044646	Pentatricopeptide repeat-containing protein EMB1417-like	PANTHER	PTHR46782	OS01G0757700 PROTEIN	coord: 52..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G011840.1	Lsi05G011840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding