Lsi05G010710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G010710
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein LOW PSII ACCUMULATION 1, chloroplastic
Locationchr05: 18270199 .. 18273612 (+)
RNA-Seq ExpressionLsi05G010710
SyntenyLsi05G010710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTAAGTCATTATAATTAACATCCATTTTCACAATTGTTCTCCTTCTCCTTCCCTCATGTAATTTTCCTTTTCTTGTGAACAATAGGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTAAGTTGTCCTTGTTGTTAAACTTTGAATTCAAATTGATGAAGTGTAAAATGGTTTTCTTTTTAATGCTTGAACTCCCAATCAAGTTGTGTCGTAGGTATTGATTTTTTTTATTTAAGTACTACTTTGGCCCTATACTTTTAGTTTTGATTCATTTTAGTTGTCTGTTCAAAATGTTCATTTAGCCTCGTAGTTTTAACAAGTGGTCAATTTCTCCCTATACGCAGATGTTTAACACAACTTGTATAAATGAAGGGACCAAAATAGTTATTTTATGTAAGTATAGAGACAAAAATGGACATTTTCAAAGTACATGCACCAAAATGAACAATAGTTGAAATTGCATAAATTGAAAAGAACCAAAGTCGGAAGTATAGAAACTGGAGTAGTATTAGTTTTGTAATGAAATATATTGTTTCATTAATCATCATTCATGAGTTATCCAATTTGGAGTCGCATAGTTGGTAATGTAAACTGCACAGAAAAAAAAGGAAAGGAAAGGAAAGGAAATAAACTTTTTGCTGAATCTAATGCCAAAACTAGTTAATCTTACAGAAGTTAACCAAAGTAGAATTTAAAGCTAAACTTTTTCTATGTTAATGTTTGTTCATGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGAAGACAAACACTTCCTCTTCTTCCGAGTGAGTACTCTTCTTTCATACTTGAATCAATTTAGACACTCCGTTAATCATTTATAACTATTTTCACTTAATTTCATTAAGGTCAATTTACAATCACCTAAATAAAATTTGGTTAAATTACAAATTTAGTCCCTATAGTTTTATCAGACCATGAGGACTAAATTCCAACTTTCTCCAAACCATAGGGACTAAATCTGTTTCTGCTAAAATCTTAAGAAAGTAGCAAGAAAAATTATAACTTAATTCTTTCTATATAAGTGGAGAAAAACAGATGAAAATGAGAAAATGGAAAACCAATCATATTAATGAAAAATCTCTACTATTCATTTGATTCTAGCATTTCTCTCTAATATTATGTTAATCCATACATTTAAAGAAGTCTTAAGATTATGCACTAACAATTGTAAAACGAAATCTTAACAGAGGGTTTAAATTGATTAACTTACTAGAGTTTTTAATCTAATCAAACACCAGTGATATAAATACAAACTCTATAAGTTTAGGGTTAGATGTTGATTTTCTCTCTATTTATTTGAAACTTTAAGACATGCTTATCTTCCATTTTAATGATTGAGATAAACTTAAAACCTCCTCTGTGATCTCCTTTTGAGCTGGCATCAAACCTTCCATATCTAATTCAAGCCCTATTTGTTTCAACTTCCAAGGCACTACAGAATCCCTTATCTCACGCATATATATATATACATACATACATATATATACACGCACATACATACATACAGTAATTTTAGCTTCTTTTTTTTTTGCGTACAAACTTAATGTCAAACTATACGGCTGAATCATATTGGTGTAATTCATCTGTTGCCAAATCTCTTGCCACAAACAGGGAAGATTGTACTATTTTGAAATTCATGCTACCGCTTTCTTATTTTGGTTTTCACCTTTATTTTTTTAATATTCGTGAATGTCTTCTCACGGGACAACCCGTTTGACCCTACAACATTTGGGTGTCAAGAAAACGCGTAGAAAATTAATTCTTAGGTAGGTGGTCACCATGGATTGAACTCATGACTTCTTAGCCATTTATTGAGACTTTATCTCCTTTTTTACCACTAAATCAATCCAGGATGGTTTTTGGTTTTCACCTTTTATAAAGAATATTGTCAAATTCTAAAATCAAAAATAAGATTTTAAAAACTACTTTTCTTTGTTTTCAAATTTTGGCTTGGTTTTTAGAAATATTAGTTTTAGTGGATAACAAATCATCGTAGCTTATAAGTGGAAGTGGTATTTATAAACTTAATTTTCAAAAACCAAAAACTAAAGCTTTGTCTGATAACCATTTAATTTATGGTTTATGGTTTTAAAAACCAAGTTCATAAACATTACTTTCACTCATAAGTTTCTATGTTTTGATATCAAATTACTATTAATGTTTTCATAAACCAAGTAAATTTTGAAAACTAAAACAAATAGTTTTAAAAAATTTGTTTATGTTTCTATAATTTAACTAGGAATTCAAGTGTTTCTTTAACAAAGATGTGAAAACCATAATTGAAAAATTGGGGAGAAACAAGCATAAATTTCAAAAACAGAAAACTAAAAACGAAATTGTTATCAAACAGGGCCTAAATAGTTGGTTATCAAACGGGATCTGTATTAATCTGTTCTTGTTTTCAACCTTGTTCTTAAATGAGTATTATTGAGTGGAGTAAAGTTTTGCTATCATCTCGAAGCCATCCTGGGTACTTCCATTACAAAAGCTCCAACACCATTGTCATGCTGGACTGCCTGAGAAAAACAGGTTTTTGTAAATTCTAAAGAGATAAAATGGAGAGATTTAGCTTATCTGACATCATAATTTTCATTTTTTGTTATCTATAATCCAATATTCTTAGTTCTAAGTTATTTTTTGCTTTTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTAT

mRNA sequence

AGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGAAGACAAACACTTCCTCTTCTTCCGAGTGAGTACTCTTCTTTCATACTTGAATCAATTTAGACACTCCGTTAATCATTTATAACTATTTTCACTTAATTTCATTAAGGTCAATTTACAATCACCTAAATAAAATTTGGTTAAATTACAAATTTAGTCCCTATAGTTTTATCAGACCATGAGGACTAAATTCCAACTTTCTCCAAACCATAGGGACTAAATCTGTTTCTGCTAAAATCTTAAGAAAGTAGCAAGAAAAATTATAACTTAATTCTTTCTATATAAGTGGAGAAAAACAGATGAAAATGAGAAAATGGAAAACCAATCATATTAATGAAAAATCTCTACTATTCATTTGATTCTAGCATTTCTCTCTAATATTATGTTAATCCATACATTTAAAGAAGTCTTAAGATTATGCACTAACAATTGTAAAACGAAATCTTAACAGAGGGTTTAAATTGATTAACTTACTAGAGTTTTTAATCTAATCAAACACCAGTGATATAAATACAAACTCTATAAGTTTAGGGTTAGATGTTGATTTTCTCTCTATTTATTTGAAACTTTAAGACATGCTTATCTTCCATTTTAATGATTGAGATAAACTTAAAACCTCCTCTGTGATCTCCTTTTGAGCTGGCATCAAACCTTCCATATCTAATTCAAGCCCTATTTGTTTCAACTTCCAAGGCACTACAGAATCCCTTATCTCACGCATATATATATATACATACATACATATATATACACGCACATACATACATACAGTAATTTTAGCTTCTTTTTTTTTTGCGTACAAACTTAATGTCAAACTATACGGCTGAATCATATTGGTGTAATTCATCTGTTGCCAAATCTCTTGCCACAAACAGGGAAGATTGTACTATTTTGAAATTCATGCTACCGCTTTCTTATTTTGGTTTTCACCTTTATTTTTTTAATATTCGTGAATGTCTTCTCACGGGACAACCCGTTTGACCCTACAACATTTGGGTGTCAAGAAAACGCGTAGAAAATTAATTCTTAGGTAGGTGGTCACCATGGATTGAACTCATGACTTCTTAGCCATTTATTGAGACTTTATCTCCTTTTTTACCACTAAATCAATCCAGGATGGTTTTTGGTTTTCACCTTTTATAAAGAATATTGTCAAATTCTAAAATCAAAAATAAGATTTTAAAAACTACTTTTCTTTGTTTTCAAATTTTGGCTTGGTTTTTAGAAATATTAGTTTTAGTGGATAACAAATCATCGTAGCTTATAAGTGGAAGTGGTATTTATAAACTTAATTTTCAAAAACCAAAAACTAAAGCTTTGTCTGATAACCATTTAATTTATGGTTTATGGTTTTAAAAACCAAGTTCATAAACATTACTTTCACTCATAAGTTTCTATGTTTTGATATCAAATTACTATTAATGTTTTCATAAACCAAGTAAATTTTGAAAACTAAAACAAATAGTTTTAAAAAATTTGTTTATGTTTCTATAATTTAACTAGGAATTCAAGTGTTTCTTTAACAAAGATGTGAAAACCATAATTGAAAAATTGGGGAGAAACAAGCATAAATTTCAAAAACAGAAAACTAAAAACGAAATTGTTATCAAACAGGGCCTAAATAGTTGGTTATCAAACGGGATCTGTATTAATCTGTTCTTGTTTTCAACCTTGTTCTTAAATGAGTATTATTGAGTGGAGTAAAGTTTTGCTATCATCTCGAAGCCATCCTGGGTACTTCCATTACAAAAGCTCCAACACCATTGTCATGCTGGACTGCCTGAGAAAAACAGGTTTTTGTAAATTCTAAAGAGATAAAATGGAGAGATTTAGCTTATCTGACATCATAATTTTCATTTTTTGTTATCTATAATCCAATATTCTTAGTTCTAAGTTATTTTTTGCTTTTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTAT

Coding sequence (CDS)

ATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGA

Protein sequence

MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Homology
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BLAST of Lsi05G010710 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-25
Identity = 73/250 (29.20%), Postives = 120/250 (48.00%), Query Frame = 0 

Query: 2   FFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN 61
           FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN 
Sbjct: 202 FFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENK 261

Query: 62  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFT 121
            +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG +  +  A + ++ F 
Sbjct: 262 KEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFR 321

Query: 122 ERLLERGVLVVPL---------------------ATDVSTLKFEFDEREE--VKDITTKR 181
             LL RGVL+VP+                     AT + ++  +FD R +  V     K 
Sbjct: 322 TELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKG 381

Query: 182 KRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQL 229
           +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +L
Sbjct: 382 EIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKEL 441

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BLAST of Lsi05G010710 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 4.6e-124
Identity = 228/237 (96.20%), Postives = 235/237 (99.16%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 221

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE+LLERGVLVVPLATDV+TL FEFDEREEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]
BLAST of Lsi05G010710 vs. ExPASy TrEMBL
Match: A0A1S3BHU5 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489822 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 4.6e-124
Identity = 228/237 (96.20%), Postives = 235/237 (99.16%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 221

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE+LLERGVLVVPLATDV+TL FEFDEREEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]
BLAST of Lsi05G010710 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.7e-123
Identity = 227/237 (95.78%), Postives = 234/237 (98.73%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIARLVICAGPESFI+EAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPF 221

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLVVPLATDV+TL FEFD+REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]
BLAST of Lsi05G010710 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.3e-122
Identity = 225/237 (94.94%), Postives = 232/237 (97.89%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFGAVALFAFLYFREN
Sbjct: 144 MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFREN 203

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPF
Sbjct: 204 NAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPF 263

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPVYM++WSAWLD+QK
Sbjct: 264 TERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQK 323

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 324 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]
BLAST of Lsi05G010710 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.1e-120
Identity = 222/237 (93.67%), Postives = 230/237 (97.05%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLLAALAN+SRAEEVPDIL GLGIDFGAVA FAFLYFREN
Sbjct: 100 MFFYLTFIASGTLGGLIATTQLLAALANTSRAEEVPDILNGLGIDFGAVAFFAFLYFREN 159

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPES IMEAFK+SEPF
Sbjct: 160 NAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESLIMEAFKTSEPF 219

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPVYM++WSAWLD+QK
Sbjct: 220 TERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQK 279

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 280 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]
BLAST of Lsi05G010710 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 462.6 bits (1189), Expect = 2.0e-126
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN
Sbjct: 97  MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 156

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF
Sbjct: 157 NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 216

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLVVPLATDVSTL FEFDEREEVKD+TTKRKRLWRLTPVYMTEWSAWLDEQK
Sbjct: 217 TERLLERGVLVVPLATDVSTLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQK 276

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 277 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 333

[Close]
BLAST of Lsi05G010710 vs. NCBI nr
Match: XP_008447350.1 (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA0037902.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa] >TYJ98034.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa])

HSP 1 Score: 453.8 bits (1166), Expect = 9.4e-124
Identity = 228/237 (96.20%), Postives = 235/237 (99.16%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 221

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE+LLERGVLVVPLATDV+TL FEFDEREEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]
BLAST of Lsi05G010710 vs. NCBI nr
Match: XP_004152010.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hypothetical protein Csa_017553 [Cucumis sativus])

HSP 1 Score: 451.8 bits (1161), Expect = 3.6e-123
Identity = 227/237 (95.78%), Postives = 234/237 (98.73%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIARLVICAGPESFI+EAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPF 221

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLVVPLATDV+TL FEFD+REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]
BLAST of Lsi05G010710 vs. NCBI nr
Match: KAG7011306.1 (Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 447.6 bits (1150), Expect = 6.7e-122
Identity = 225/237 (94.94%), Postives = 232/237 (97.89%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFGAVALFAFLYFREN
Sbjct: 174 MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFREN 233

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPF
Sbjct: 234 NAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPF 293

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPVYM++WSAWLD+QK
Sbjct: 294 TERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQK 353

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 354 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 410

[Close]
BLAST of Lsi05G010710 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 447.6 bits (1150), Expect = 6.7e-122
Identity = 225/237 (94.94%), Postives = 232/237 (97.89%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFGAVALFAFLYFREN
Sbjct: 144 MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFREN 203

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPF
Sbjct: 204 NAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPF 263

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPVYM++WSAWLD+QK
Sbjct: 264 TERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQK 323

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 324 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]
BLAST of Lsi05G010710 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 323.9 bits (829), Expect = 1.0e-88
Identity = 160/238 (67.23%), Postives = 198/238 (83.19%), Query Frame = 0 

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG+LGGLIAT++L+ ALAN +R+ EV +I+KGLG+D GA +LFAFLYF EN
Sbjct: 110 MFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNEN 169

Query: 61  NAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFIMEAFKSSEP 120
             KNAQ+ARLSREE+L  LK+RV++ NKVI +  LRG+ARLVICAGP  FI EAFK S+ 
Sbjct: 170 KTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKE 229

Query: 121 FTERLLERGVLVVPLATDVSTLKFEFDEREEV-KDITTKRKRLWRLTPVYMTEWSAWLDE 180
           +T+ L+ERGV+VV  ATD ++   EFDE +   ++++ +RK+LWR+TPV++ EW  WL+E
Sbjct: 230 YTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNE 289

Query: 181 QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV 237
           QKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Sbjct: 290 QKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347

[Close]
BLAST of Lsi05G010710 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-26
Identity = 73/250 (29.20%), Postives = 120/250 (48.00%), Query Frame = 0 

Query: 2   FFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN 61
           FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN 
Sbjct: 202 FFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENK 261

Query: 62  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFT 121
            +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG +  +  A + ++ F 
Sbjct: 262 KEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFR 321

Query: 122 ERLLERGVLVVPL---------------------ATDVSTLKFEFDEREE--VKDITTKR 181
             LL RGVL+VP+                     AT + ++  +FD R +  V     K 
Sbjct: 322 TELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKG 381

Query: 182 KRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQL 229
           +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +L
Sbjct: 382 EIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKEL 441

The following BLAST results are available for this feature:
BLAST of Lsi05G010710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SRY42.7e-2529.20Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G... [more]
BLAST of Lsi05G010710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BG354.6e-12496.20Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3BHU54.6e-12496.20protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A0A0L9021.7e-12395.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1[more]
A0A6J1HGA13.3e-12294.94protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1HWD01.1e-12093.67protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO... [more]
BLAST of Lsi05G010710 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888898.12.0e-12699.16protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899... [more]
XP_008447350.19.4e-12496.20PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA003... [more]
XP_004152010.13.6e-12395.78protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hyp... [more]
KAG7011306.16.7e-12294.94Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma ... [more]
XP_022963501.16.7e-12294.94protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_02296350... [more]
BLAST of Lsi05G010710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G28740.11.0e-8867.23FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G02910.11.9e-2629.20tetratricopeptide repeat (TPR)-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021883Protein LOW PSII ACCUMULATION 1-likePFAMPF11998DUF3493coord: 1..60
e-value: 2.1E-17
score: 63.0
NoneNo IPR availablePANTHERPTHR35498:SF1LOW PSII ACCUMULATION-LIKE PROTEINcoord: 1..235
NoneNo IPR availablePANTHERPTHR35498PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTICcoord: 1..235

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G010710.1Lsi05G010710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane