Lsi05G010230 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G010230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	chr05: 17720698 .. 17721288 (+)
RNA-Seq Expression	Lsi05G010230
Synteny	Lsi05G010230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAATATCCAATAATAATGTTCAAAATTTAGTTGTTGTTGGTTCTTCTTCGTCGTCTTCTTCTTCTTCATCTTCGAGTCGTTACGAGAATCAAAAGCGACGAGATTGGAATACATTTTGTCAATACCTTAAAAATCATAGACCACCACTTGCACTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGTTATTTAGATCAATTTGGTAAAACAAAGGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCTCCTGCCCCTTGCCCTTGTCCTTTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCGTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTAAGGCTTTATCTTCGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAGCAACAACAACAACACCAAATTCCTCAATCAACTAATGGAGTTTGA

mRNA sequence

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAATATCCAATAATAATGTTCAAAATTTAGTTGTTGTTGGTTCTTCTTCGTCGTCTTCTTCTTCTTCATCTTCGAGTCGTTACGAGAATCAAAAGCGACGAGATTGGAATACATTTTGTCAATACCTTAAAAATCATAGACCACCACTTGCACTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGTTATTTAGATCAATTTGGTAAAACAAAGGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCTCCTGCCCCTTGCCCTTGTCCTTTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCGTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTAAGGCTTTATCTTCGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAGCAACAACAACAACACCAAATTCCTCAATCAACTAATGGAGTTTGA

Coding sequence (CDS)

ATGGATTCAATACTCTCTGAATTTGAAGCCCTCAACAACAACAACAACAATCAACAATTTGGATTAGTAATATCCAATAATAATGTTCAAAATTTAGTTGTTGTTGGTTCTTCTTCGTCGTCTTCTTCTTCTTCATCTTCGAGTCGTTACGAGAATCAAAAGCGACGAGATTGGAATACATTTTGTCAATACCTTAAAAATCATAGACCACCACTTGCACTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGTTATTTAGATCAATTTGGTAAAACAAAGGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCTCCTGCCCCTTGCCCTTGTCCTTTACGTCAAGCTTGGGGCAGCCTTGATGCTCTTATTGGTAGACTTCGGGCAGCGTTTGAAGAGAATGGTGGGATGCCCGAAGCTAATCCTTTTGGTGCCCGAGCTGTAAGGCTTTATCTTCGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGCTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAGCAACAACAACAACACCAAATTCCTCAATCAACTAATGGAGTTTGA

Protein sequence

MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQHQIPQSTNGV

Homology

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BLAST of Lsi05G010230 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.5e-72
Identity = 136/164 (82.93%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 23  VISNNNVQNLVVVGS------SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSR 82
           +ISNN+       G       SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+LSR
Sbjct: 22  IISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 81

Query: 83  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 142
           CSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF
Sbjct: 82  CSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 141

Query: 143 EENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 181
           EENGG PE NPFGARAVRLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 142 EENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

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BLAST of Lsi05G010230 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-70
Identity = 125/145 (86.21%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 36  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 95
           G  S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKT
Sbjct: 67  GGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKT 126

Query: 96  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 155
           KVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRL
Sbjct: 127 KVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRL 186

Query: 156 YLREVRDLQSKARGISYEKKKRKRP 181
           YLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 187 YLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of Lsi05G010230 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-70
Identity = 125/145 (86.21%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 36  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 95
           G  S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKT
Sbjct: 67  GGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKT 126

Query: 96  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 155
           KVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRL
Sbjct: 127 KVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRL 186

Query: 156 YLREVRDLQSKARGISYEKKKRKRP 181
           YLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 187 YLREVRETQARARGISYEKKKRKKP 211

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BLAST of Lsi05G010230 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.7e-69
Identity = 132/180 (73.33%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MD I+  F    N ++N    +  +           SSS  S ++  SRYENQKRRDWNT
Sbjct: 1   MDHIIG-FMGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           F QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CPLRQ
Sbjct: 61  FGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Lsi05G010230 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.3e-68
Identity = 127/158 (80.38%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 36  GSSSSSSSSS-------SSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRY 95
           GSSSS+SS S       S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVLEFLRY
Sbjct: 21  GSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRY 80

Query: 96  LDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPF 155
           LDQFGKTKVHT  CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+NPF
Sbjct: 81  LDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 140

Query: 156 GARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQQQ 187
            ARAVRLYLREVR+ Q++ARG+SYEKKKRK+PQQQQ Q
Sbjct: 141 AARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQLQ 178

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BLAST of Lsi05G010230 vs. ExPASy TrEMBL
Match: A0A0A0LB62 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.7e-93
Identity = 180/195 (92.31%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSILSEFE+L NNNNNQ FG+V++NN +QNL VVGSSSSSSSSSSSSRYENQKRRDWNT
Sbjct: 1   MDSILSEFESL-NNNNNQPFGVVVTNNTLQNL-VVGSSSSSSSSSSSSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQSTNG 196
           QQQ    QI QS+NG
Sbjct: 181 QQQ----QIAQSSNG 189

[Close]

BLAST of Lsi05G010230 vs. ExPASy TrEMBL
Match: A0A5D3BLY0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31142G00010 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.8e-92
Identity = 179/195 (91.79%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSILSEFE+L NNNNN  FG+V++NN +QNL VVGSSSSSSSSSSSSRYENQKRRDWNT
Sbjct: 1   MDSILSEFESL-NNNNNPPFGVVVTNNTLQNL-VVGSSSSSSSSSSSSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQSTNG 196
           QQQ    QI QS+NG
Sbjct: 181 QQQ----QIAQSSNG 189

[Close]

BLAST of Lsi05G010230 vs. ExPASy TrEMBL
Match: A0A1S3BHE8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489869 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.8e-92
Identity = 179/195 (91.79%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSILSEFE+L NNNNN  FG+V++NN +QNL VVGSSSSSSSSSSSSRYENQKRRDWNT
Sbjct: 1   MDSILSEFESL-NNNNNPPFGVVVTNNTLQNL-VVGSSSSSSSSSSSSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQSTNG 196
           QQQ    QI QS+NG
Sbjct: 181 QQQ----QIAQSSNG 189

[Close]

BLAST of Lsi05G010230 vs. ExPASy TrEMBL
Match: A0A6J1HQU3 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=LOC111466975 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.1e-86
Identity = 167/195 (85.64%), Postives = 176/195 (90.26%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSI+ EFE L   NN QQFG+    +N+QNL +      SSSSSS+SRYENQKRRDWNT
Sbjct: 1   MDSIIPEFEGL---NNTQQFGV----SNLQNLGI-----GSSSSSSNSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQSTNG 196
           QQQ+QQ Q+PQ +NG
Sbjct: 181 QQQRQQQQLPQPSNG 183

[Close]

BLAST of Lsi05G010230 vs. ExPASy TrEMBL
Match: A0A6J1HLN0 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111464089 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.1e-86
Identity = 167/195 (85.64%), Postives = 176/195 (90.26%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSI+ EFE L   NN QQFG+    +N+QNL +      SSSSSS+SRYENQKRRDWNT
Sbjct: 1   MDSIIPEFEGL---NNTQQFGV----SNLQNLGI-----GSSSSSSNSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQSTNG 196
           QQQ+QQ Q+PQ +NG
Sbjct: 181 QQQRQQQQLPQPSNG 183

[Close]

BLAST of Lsi05G010230 vs. NCBI nr
Match: XP_008447416.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038047.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK00055.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 7.9e-92
Identity = 179/195 (91.79%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSILSEFE+L NNNNN  FG+V++NN +QNL VVGSSSSSSSSSSSSRYENQKRRDWNT
Sbjct: 1   MDSILSEFESL-NNNNNPPFGVVVTNNTLQNL-VVGSSSSSSSSSSSSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQSTNG 196
           QQQ    QI QS+NG
Sbjct: 181 QQQ----QIAQSSNG 189

[Close]

BLAST of Lsi05G010230 vs. NCBI nr
Match: XP_011651439.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KAE8650655.1 hypothetical protein Csa_009615 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 5.1e-91
Identity = 176/192 (91.67%), Postives = 183/192 (95.31%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSILSEFE+L NNNNNQ FG+V++NN +QNL VVGSSSSSSSSSSSSRYENQKRRDWNT
Sbjct: 1   MDSILSEFESL-NNNNNQPFGVVVTNNTLQNL-VVGSSSSSSSSSSSSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQS 193
           QQQQ     P++
Sbjct: 181 QQQQIAQSSPKA 190

[Close]

BLAST of Lsi05G010230 vs. NCBI nr
Match: XP_038887548.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038887549.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038887550.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida])

HSP 1 Score: 344.7 bits (883), Expect = 5.1e-91
Identity = 176/195 (90.26%), Postives = 179/195 (91.79%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSIL EFE  NNNNN QQFGLV+SN  +QNLVV      SSSSS+SSRYENQKRRDWNT
Sbjct: 1   MDSILPEFEGFNNNNNQQQFGLVVSNTTLQNLVV-----GSSSSSTSSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQSTNG 196
           QQQQQ  QI QS NG
Sbjct: 181 QQQQQ--QISQSING 188

[Close]

BLAST of Lsi05G010230 vs. NCBI nr
Match: XP_022963938.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022963939.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022967435.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_022967436.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_022967437.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_023511397.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo] >KAG6571527.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327.8 bits (839), Expect = 6.4e-86
Identity = 167/195 (85.64%), Postives = 176/195 (90.26%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MDSI+ EFE L   NN QQFG+    +N+QNL +      SSSSSS+SRYENQKRRDWNT
Sbjct: 1   MDSIIPEFEGL---NNTQQFGV----SNLQNLGI-----GSSSSSSNSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180

Query: 181 QQQQQQHQIPQSTNG 196
           QQQ+QQ Q+PQ +NG
Sbjct: 181 QQQRQQQQLPQPSNG 183

[Close]

BLAST of Lsi05G010230 vs. NCBI nr
Match: XP_023532600.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.4 bits (781), Expect = 3.4e-79
Identity = 161/184 (87.50%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSS-SRYENQKRRDWN 60
           MDSI +EFE L    N QQFG     ++V NL    SSSSSSSSSSS SRYENQKRRDWN
Sbjct: 1   MDSI-TEFEGL----NAQQFG----GSSVPNLGGGSSSSSSSSSSSSNSRYENQKRRDWN 60

Query: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120
           TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR
Sbjct: 61  TFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLR 120

Query: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKR 180
           QAWGSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKR
Sbjct: 121 QAWGSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR 175

Query: 181 PQQQ 184
           PQQQ
Sbjct: 181 PQQQ 175

[Close]

BLAST of Lsi05G010230 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 273.1 bits (697), Expect = 1.8e-73
Identity = 136/164 (82.93%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 23  VISNNNVQNLVVVGS------SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSR 82
           +ISNN+       G       SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+LSR
Sbjct: 22  IISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 81

Query: 83  CSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 142
           CSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF
Sbjct: 82  CSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 141

Query: 143 EENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 181
           EENGG PE NPFGARAVRLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 142 EENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of Lsi05G010230 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 261.9 bits (668), Expect = 4.0e-70
Identity = 132/180 (73.33%), Postives = 144/180 (80.00%), Query Frame = 0


Query: 1   MDSILSEFEALNNNNNNQQFGLVISNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNT 60
           MD I+  F    N ++N    +  +           SSS  S ++  SRYENQKRRDWNT
Sbjct: 1   MDHIIG-FMGTTNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           F QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CPLRQ
Sbjct: 61  FGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Lsi05G010230 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 247.7 bits (631), Expect = 7.9e-66
Identity = 125/164 (76.22%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 37  SSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTK 96
           +SS+  +  SSSRYENQKRRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTK
Sbjct: 13  NSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTK 72

Query: 97  VHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLY 156
           VH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+
Sbjct: 73  VHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLF 132

Query: 157 LREVRDLQSKARGISYEKKK----RKRPQQQ-----QQQHQIPQ 192
           LREVRD Q+KARG+SYEKK+    R++PQ Q     QQQ Q PQ
Sbjct: 133 LREVRDFQAKARGVSYEKKRKRVNRQKPQTQPPLQLQQQQQQPQ 176

[Close]

BLAST of Lsi05G010230 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.7 bits (613), Expect = 9.6e-64
Identity = 112/145 (77.24%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 36  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 95
           G S  SS  ++ SRYE+QKRRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKT
Sbjct: 18  GPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKT 77

Query: 96  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 155
           KVH   CP++GH  PP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+
Sbjct: 78  KVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRI 137

Query: 156 YLREVRDLQSKARGISYEKKKRKRP 181
           YLREVR+ Q+KARGI YEKKKRKRP
Sbjct: 138 YLREVRESQAKARGIPYEKKKRKRP 162

[Close]

BLAST of Lsi05G010230 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.8 bits (608), Expect = 3.7e-63
Identity = 119/180 (66.11%), Postives = 140/180 (77.78%), Query Frame = 0


Query: 25  SNNNVQNLVVVGSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLE 84
           +N N    +   + SS SS  SSSRYENQKRRDWNTFCQYL+NH PPL+L+ CSGAHVL+
Sbjct: 9   NNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLD 68

Query: 85  FLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPE 144
           FLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE
Sbjct: 69  FLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPE 128

Query: 145 ANPFGARAVRLYLREVRDLQSKARGISYEKKKRK---------RPQQQQQQHQIPQSTNG 196
            +PFG+R+VR++LREVRD Q+K+RG+SYEKK+++         +PQ Q    Q PQ   G
Sbjct: 129 TSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLPQQPQQEQG 188

The following BLAST results are available for this feature:

BLAST of Lsi05G010230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	2.5e-72	82.93	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	1.4e-70	86.21	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	1.4e-70	86.21	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
Q9LW68	5.7e-69	73.33	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XVI8	6.3e-68	80.38	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]

BLAST of Lsi05G010230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB62	7.7e-93	92.31	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 S...	[more]
A0A5D3BLY0	3.8e-92	91.79	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BHE8	3.8e-92	91.79	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HQU3	3.1e-86	85.64	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HLN0	3.1e-86	85.64	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lsi05G010230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447416.1	7.9e-92	91.79	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA00...	[more]
XP_011651439.1	5.1e-91	91.67	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KAE8650655.1 hypot...	[more]
XP_038887548.1	5.1e-91	90.26	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_03888754...	[more]
XP_022963938.1	6.4e-86	85.64	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_0229639...	[more]
XP_023532600.1	3.4e-79	87.50	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi05G010230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	1.8e-73	82.93	Protein of unknown function (DUF640)	[more]
AT3G23290.2	4.0e-70	73.33	Protein of unknown function (DUF640)	[more]
AT5G28490.1	7.9e-66	76.22	Protein of unknown function (DUF640)	[more]
AT1G07090.1	9.6e-64	77.24	Protein of unknown function (DUF640)	[more]
AT3G04510.1	3.7e-63	66.11	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 39..162 e-value: 1.1E-66 score: 222.7
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 49..176 score: 84.495857
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..196
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 1..191
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G010230.1	Lsi05G010230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus