Lsi05G009960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box/kelch-repeat protein OR23
Location	chr05: 17400123 .. 17402890 (-)
RNA-Seq Expression	Lsi05G009960
Synteny	Lsi05G009960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTGTAATCCCCATGTCTACGGTCTCTGCAATTTCACCCCAATTTCCCTTGGCCCTCACTTGTATGTAATCGGCGGCTCTCTCTTCGACACTCGCTCTTATCCAATCGACCGTCCTTCTTCTTCCTCCTCTGCTTTCCGATTCGATTTCCATTCCTCCTTTTGGGAACCCATCTCGCCGATGCTCTCGCCACGGGGGAGCTTTGCGTGCGCTGCGGTTCCTGATTCCGGTCAGATTTTGGTAGCCGGAGGTGGGTCTAGGCACACGATGTTTGCGGCGGCCGGGAGTCGAATGAGCTCCGTGGAAAGGTATGGTTTAACTCGAAAGTTTAAGTTGATGGGTTACTGTAAATTTGATTGGATATCGATATTGCTTTAACAGGTATGATGTGGAGAGAGATGAGTGGGTTGCACTTGATGGGTTGCCGAGGTTTCGAGCTGGGTGTGTTGGGTTTTTTGTGGGAAATGGAGGGAAGAGAGAGTTTTGGGTGATGGGTGGCTATGGTGAATCAAGGACTATTTCAGGAGTGTTTCCTGTGGATGAATATTATAGAGATGCTGTTGTGATGGAGCTGAGGAATGGCCATGGCAGTGGGAGGTGGAGGCAAATTGGGGATATGTGGGAAGAAGGGGAAAGGAGGAGGCTAGGAAAAATTGTGGTGATTGAGAATTATAACCATGGACAACCTGGAATTTTCATGCTTGATGGTGATGAATTCTTAAGGTTACTCTTCTTCTTTTTAGTTGGTTATGTGTTGTTTAAGATTCCTATAATAGTTGAGAAAGATTTCAGTTTTGTTCTCGGTTTACTTGAGCAAATAGCTTTCTGATCTTAATGTAGGCTGTTTAAGTGTTTGCTTTGGTTTTGTGACTGATTACTTTTCATATGATTGACTGTGGAAATTCCTTTTATCACTCTGTTATTTGTTCTTTGGTTCCTTTTTCCCCATTTAGAGAGTGAAAAGATAAAGTGTCAATTGCATACATCCATTTTGTACTGTGGAAACCTATGGCTTTATTTGTTGATGAAGAAAAATTAATAGCAAACTAGAAGCATATGAGCCCATAAAACTAAATGTTGAGCATTAAATTTTTTGCTCCTTTAGTTTTCATGGTACAAGAAGCTCTGGATTTGGAAATAAAAATTTGGCTGAGGGTTCCCATCTCTTTAAATAGGATACTTTTGGAATGAAAGGTGGATGCTTCTCCTTAAGAAAGTGGAGGAACATGTTCTAATGTTATGGGTGTTGGTGACTAGTTGAAAGAATTTATTTGGAGTGGGCTCATTAACTAATTGGAATCATCAGATTTGTTACACCCATTCTGCCTGGCAAAAGAAGAACAGAGCCAAATGGAGGAATAATTCAAAAACTTTCAGAGTTCCTTAATTTGATGTATGAGGTTAACTAGGATAGTAAATTGTCTGAAAATTTTCATAGACCATGAAGGTGGCTACTGTTACAAGGTTTTCTCCATTTCGTCGTTCTTGGCTTGCAGATCGAGTTTTAGTCCAAATGTTGTGATGGTGTTTTCATCGAAAAAAGTTAACTTGGTAGGCAGGAAAATAGAGATTACTCACTCATACATCTTGAAAATATGGAGTTTGTCTATTTTCGAGCTCCCAAACTGAATTTAAAACTCTAGTTATAAATGGTTTCTCTTTTCATTATCTTGTCTGGTTTCTCGAATAAGTATTTCCTCTATTCTGTTTCTCATTCCAACTACATTGTTAGGGACAATGACTGCCAACATATTTCTACATTGGTATGATATTGCTCACTTTAGGTATAAACCCTCCTGCCTTTAGTTTTGATTTCACCTGAAAGATCTCATATTATTTGAGATAGTTGTCTTCACTTATATATCATAGATTCTCACCTTATCTAACTAATGTGGGACTTTGGTCGTACTGCTCTATTGTTCATTAGTATGTGAATACCAAACTTGAGATCGGTTGTTCATTGGTATGTGAATACCAAAATTGAGAGTTCCATATATGATTTGCACTTGAATCTTAAGTTACAGACTGATACATATACCTTACAAAGCTCTGAGATTAATGAACTTTTTCTTCTTCTGATTTCCTCTTCTTTGGTCTCCTACAATGTTTCTAGATATGAAATGGCATCAAACAGATGGGTTGAAGAGTCAAGGGTACCAAGGAAAACTCCTTTCAATTCATCATATGGTTTTGTTGCATTGAATAGAGAATTGTATGTTATATCATTTCTAAAGACAGAGTCTGCCGAAGCTCGAAGGCTACGACATCATAAGAAAGGAGGATCACTGTACATGCAAATCTACAATCCTGAGAAGAAGACGTGGAGATCTCTCGTTACCAGGTCACCTTTTCACCACCCGATGGATTTCGATACTGCAGCTATTTGTACGGTTCGTATGTGAAAAATGTCAATACCTCTGCAATCAACTACTCATTATTATGCTTACAGATTTAGGCATATATGCTGATTGTTCTCTGCTAGCTAAGTGTGGCACATACATTTGTATTGCTTTATGTACATGTTTAGAATGATTTATAGGCAACCCTTTTTTCCCTCTTACTGGAAATAAGTTACATCAACTCAAGAACATAAATATTGTACATTTGTATATATTGTTCATTGTAGGTGATAAATAGATGAATTTTTTATCACATTATCTACTGATTCGTCTTGAATCCAAATAAACTAGGTTTAGAAAGTTCTGATTTGTGTGAATTTATGTATTGAATGAATTTCAATAGCTTGAATGGATGACTGTTGAACT

mRNA sequence

ATGCCTTGTAATCCCCATGTCTACGGTCTCTGCAATTTCACCCCAATTTCCCTTGGCCCTCACTTGTATGTAATCGGCGGCTCTCTCTTCGACACTCGCTCTTATCCAATCGACCGTCCTTCTTCTTCCTCCTCTGCTTTCCGATTCGATTTCCATTCCTCCTTTTGGGAACCCATCTCGCCGATGCTCTCGCCACGGGGGAGCTTTGCGTGCGCTGCGGTTCCTGATTCCGGTCAGATTTTGGTAGCCGGAGGAGTGTTTCCTGTGGATGAATATTATAGAGATGCTGTTGTGATGGAGCTGAGGAATGGCCATGGCAGTGGGAGGTGGAGGCAAATTGGGGATATGTGGGAAGAAGGGGAAAGGAGGAGGCTAGGAAAAATTGTGGTGATTGAGAATTATAACCATGGACAACCTGGAATTTTCATGCTTGATGGTGATGAATTCTTAAGATATGAAATGGCATCAAACAGATGGGTTGAAGAGTCAAGGGTACCAAGGAAAACTCCTTTCAATTCATCATATGGTTTTGTTGCATTGAATAGAGAATTGTATGTTATATCATTTCTAAAGACAGAGTCTGCCGAAGCTCGAAGGCTACGACATCATAAGAAAGGAGGATCACTGTACATGCAAATCTACAATCCTGAGAAGAAGACGTGGAGATCTCTCGTTACCAGGTCACCTTTTCACCACCCGATGGATTTCGATACTGCAGCTATTTGTACGGTTCGTATGTGAAAAATGTCAATACCTCTGCAATCAACTACTCATTATTATGCTTACAGATTTAGGCATATATGCTGATTGTTCTCTGCTAGCTAAGTGTGGCACATACATTTGTATTGCTTTATGTACATGTTTAGAATGATTTATAGGCAACCCTTTTTTCCCTCTTACTGGAAATAAGTTACATCAACTCAAGAACATAAATATTGTACATTTGTATATATTGTTCATTGTAGGTGATAAATAGATGAATTTTTTATCACATTATCTACTGATTCGTCTTGAATCCAAATAAACTAGGTTTAGAAAGTTCTGATTTGTGTGAATTTATGTATTGAATGAATTTCAATAGCTTGAATGGATGACTGTTGAACT

Coding sequence (CDS)

ATGCCTTGTAATCCCCATGTCTACGGTCTCTGCAATTTCACCCCAATTTCCCTTGGCCCTCACTTGTATGTAATCGGCGGCTCTCTCTTCGACACTCGCTCTTATCCAATCGACCGTCCTTCTTCTTCCTCCTCTGCTTTCCGATTCGATTTCCATTCCTCCTTTTGGGAACCCATCTCGCCGATGCTCTCGCCACGGGGGAGCTTTGCGTGCGCTGCGGTTCCTGATTCCGGTCAGATTTTGGTAGCCGGAGGAGTGTTTCCTGTGGATGAATATTATAGAGATGCTGTTGTGATGGAGCTGAGGAATGGCCATGGCAGTGGGAGGTGGAGGCAAATTGGGGATATGTGGGAAGAAGGGGAAAGGAGGAGGCTAGGAAAAATTGTGGTGATTGAGAATTATAACCATGGACAACCTGGAATTTTCATGCTTGATGGTGATGAATTCTTAAGATATGAAATGGCATCAAACAGATGGGTTGAAGAGTCAAGGGTACCAAGGAAAACTCCTTTCAATTCATCATATGGTTTTGTTGCATTGAATAGAGAATTGTATGTTATATCATTTCTAAAGACAGAGTCTGCCGAAGCTCGAAGGCTACGACATCATAAGAAAGGAGGATCACTGTACATGCAAATCTACAATCCTGAGAAGAAGACGTGGAGATCTCTCGTTACCAGGTCACCTTTTCACCACCCGATGGATTTCGATACTGCAGCTATTTGTACGGTTCGTATGTGA

Protein sequence

MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPISPMLSPRGSFACAAVPDSGQILVAGGVFPVDEYYRDAVVMELRNGHGSGRWRQIGDMWEEGERRRLGKIVVIENYNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTPFNSSYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPFHHPMDFDTAAICTVRM

Homology

[Close]

BLAST of Lsi05G009960 vs. ExPASy Swiss-Prot
Match: Q0V7S6 (F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana OX=3702 GN=OR23 PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.9e-69
Identity = 141/322 (43.79%), Postives = 184/322 (57.14%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNF  ++LGP++YV+GGS FDTRSYP+D P  +SS FR+ F  S WE +S
Sbjct: 125 MPCNPHVYGLCNFVAVALGPYVYVLGGSAFDTRSYPLDVPLPTSSVFRYSFVKSVWERLS 184

Query: 61  PMLSPRGSFACAAVPDS-GQILVAG----------------------------------- 120
           PM+SPRGSFACAA+P S G+I+VAG                                   
Sbjct: 185 PMMSPRGSFACAAMPGSCGRIIVAGGGSRHTLFGAAGSRMSSVEMYDVEKDEWRVMNELP 244

Query: 121 ---------------------------------------GVFPVDEYYRDAVVMELRNGH 180
                                                  G+ PVDEYY+DAVVM+LR   
Sbjct: 245 RFRAGCVGFLVENEKEKEKEEEGREFWVMGGYGGSRTVSGILPVDEYYKDAVVMDLR-VD 304

Query: 181 GSGRWRQIGDMWEEGERRRLGKIVVIENYNHGQPGIFMLDGDEFLRYEMASNRWVEESRV 240
           G  +WR +GDMW E ER +LGKIV ++    G+P  FMLD D  LRYEM  NRW +ES V
Sbjct: 305 GGEKWRVVGDMWGEEERPKLGKIVAVD---CGKPVFFMLDKDWILRYEMGLNRWRKESSV 364

Query: 241 PRKTPFNSSYGFVALNRELYVISFLKTES-AEARRLRHHKKGGSLYMQIYNPEKKTWRSL 247
           P+K  ++   GFVALN EL+V+  L   +  + R  R  +K GSL + +Y+P+KKTWRS+
Sbjct: 365 PKKAHYDKPVGFVALNGELHVMILLDGYNLMDTRHTRQQRKAGSLMIHMYDPKKKTWRSV 424

[Close]

BLAST of Lsi05G009960 vs. ExPASy TrEMBL
Match: A0A6J1ETP2 (F-box/kelch-repeat protein OR23 OS=Cucurbita moschata OX=3662 GN=LOC111437456 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.4e-122
Identity = 227/316 (71.84%), Postives = 239/316 (75.63%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDF++S WEPIS
Sbjct: 103 MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFYASLWEPIS 162

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACAAVP SGQILVAG                                    
Sbjct: 163 PMLSPRGSFACAAVPGSGQILVAGGGSRHTMFAAAGSRMSSVERYDVERDEWVALDGLPR 222

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGS--GRWR 180
                                          GVFPVDEYYRDAVV+ELRNG+G+  GRWR
Sbjct: 223 FRAGCVGFFVGNGEKREFWVMGGYGESRTISGVFPVDEYYRDAVVLELRNGNGNGGGRWR 282

Query: 181 QIGDMWEEGERRRLGKIVVIENY-NHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTP 240
           QIGDMWEEGERRRLGKIVVIE++ NHGQPGIFMLDGDEF RYEM SNRWVEESRVPRKTP
Sbjct: 283 QIGDMWEEGERRRLGKIVVIEDHRNHGQPGIFMLDGDEFFRYEMTSNRWVEESRVPRKTP 342

Query: 241 FNSSYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPF 247
           FNSSYGFVALN ELYVISFLKTESAEARRLRHHKKGGSLYMQIY+P KKTWRSL+TRSPF
Sbjct: 343 FNSSYGFVALNGELYVISFLKTESAEARRLRHHKKGGSLYMQIYDPVKKTWRSLITRSPF 402

[Close]

BLAST of Lsi05G009960 vs. ExPASy TrEMBL
Match: A0A6J1K4P3 (F-box/kelch-repeat protein OR23 OS=Cucurbita maxima OX=3661 GN=LOC111491154 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.9e-121
Identity = 225/318 (70.75%), Postives = 239/318 (75.16%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFR+DF++S WEPIS
Sbjct: 103 MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRYDFYASLWEPIS 162

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACAAVP SGQILVAG                                    
Sbjct: 163 PMLSPRGSFACAAVPGSGQILVAGGGSRHTMFAAAGSRMSSVERYDVERDEWVALDGLPR 222

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGS----GR 180
                                          GVFPVDEYYRDAVV+ELRNG+G+    GR
Sbjct: 223 FRAGCVGFFVGNGEKREFWVMGGYGESRTISGVFPVDEYYRDAVVLELRNGNGNGNGGGR 282

Query: 181 WRQIGDMWEEGERRRLGKIVVIE-NYNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRK 240
           WRQIGDMWEEGERRRLGKIVVIE ++NHGQPGIFMLDGDEF RYEM SNRWVEE+RVPRK
Sbjct: 283 WRQIGDMWEEGERRRLGKIVVIEDHHNHGQPGIFMLDGDEFFRYEMTSNRWVEEARVPRK 342

Query: 241 TPFNSSYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRS 247
           TPFNSSYGFVALN ELYVISFLKTESAEARRLRHHKKGGSLYMQIY+P KKTWRSL+TRS
Sbjct: 343 TPFNSSYGFVALNGELYVISFLKTESAEARRLRHHKKGGSLYMQIYDPVKKTWRSLITRS 402

[Close]

BLAST of Lsi05G009960 vs. ExPASy TrEMBL
Match: A0A1S3CFS3 (F-box/kelch-repeat protein OR23 OS=Cucumis melo OX=3656 GN=LOC103500378 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.6e-116
Identity = 222/314 (70.70%), Postives = 232/314 (73.89%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFTPISLGP+LYVIGGSLFDTRS+PIDRPSSSSSAFRFDFHSSFWEPIS
Sbjct: 103 MPCNPHVYGLCNFTPISLGPYLYVIGGSLFDTRSFPIDRPSSSSSAFRFDFHSSFWEPIS 162

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACA+V DSGQILVAG                                    
Sbjct: 163 PMLSPRGSFACASVHDSGQILVAGGGSRHRLFAAAGSRMSSVERYDVERDEWIALDGMPS 222

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGSGRWRQI 180
                                          GVFPVDEYYRDAVVMEL N    GRWRQI
Sbjct: 223 LRAGCVGFFVGNGEKREFWVMGGYGESRTISGVFPVDEYYRDAVVMELMN----GRWRQI 282

Query: 181 GDMWEEGERRRLGKIVVIEN-YNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTPFN 240
           GDMWEEGERRRLGKIVVIEN +N+GQPGIFMLDGDEF RYEMASNRWVEESR+PRKT  N
Sbjct: 283 GDMWEEGERRRLGKIVVIENHHNYGQPGIFMLDGDEFFRYEMASNRWVEESRLPRKTSSN 342

Query: 241 SSYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPFHH 247
           SSYG VALN ELYVISFLKTESAEARRLRH KKGGS+YMQIYNP+KKTWRSL TRSPF+H
Sbjct: 343 SSYGLVALNGELYVISFLKTESAEARRLRHPKKGGSMYMQIYNPKKKTWRSLATRSPFNH 402

[Close]

BLAST of Lsi05G009960 vs. ExPASy TrEMBL
Match: A0A6P4AQQ1 (F-box/kelch-repeat protein OR23 OS=Ziziphus jujuba OX=326968 GN=LOC107425869 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 9.3e-96
Identity = 179/316 (56.65%), Postives = 220/316 (69.62%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPC+P+VYGLCNFT IS+GP+LYVIGGSLFDTRS+P+DRPS SSSAFRFDF +S WE ++
Sbjct: 115 MPCSPYVYGLCNFTSISVGPYLYVIGGSLFDTRSFPMDRPSPSSSAFRFDFRTSSWERLA 174

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACAA+P+SGQILVAG                                    
Sbjct: 175 PMLSPRGSFACAALPNSGQILVAGGGSRHSLFAAAGSRMNSVERYDIVKDEWVALDGLPS 234

Query: 121 --------------------------------GVFPVDEYYRDAVVMELRNGHGSGRWRQ 180
                                           GVFPVDEYYRDAVVMEL+NG+G G WR+
Sbjct: 235 FRAGCVGFFVKNGEEEREFWVMGGYGEARTISGVFPVDEYYRDAVVMELKNGNGGGNWRE 294

Query: 181 IGDMWEEGERRRLGKIVVIE-NYNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTPF 240
           +GDMW++GER RLGKIVVIE + + G+PG++MLDG++ LRY+MASNRW EES VPRK   
Sbjct: 295 VGDMWDDGERTRLGKIVVIEDDEDRGRPGVYMLDGNDILRYDMASNRWCEESHVPRKARS 354

Query: 241 NSSYGFVALNRELYVISFLK-TESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPF 247
           +SS+GFV L+ EL+VIS LK  +SAE RRLRHHKK G+LY+QIYNP++K+WRSL+T+ PF
Sbjct: 355 DSSFGFVVLDGELHVISLLKAVKSAETRRLRHHKKPGTLYIQIYNPKRKSWRSLITKPPF 414

[Close]

BLAST of Lsi05G009960 vs. ExPASy TrEMBL
Match: A0A4Y1S2G1 (Galactose oxidase/kelch repeat superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_022940 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 8.7e-94
Identity = 173/315 (54.92%), Postives = 215/315 (68.25%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFT +S+GPHLYVIGGSLFDTRS+PIDRPS SS+ FRFDF++S W+ ++
Sbjct: 114 MPCNPHVYGLCNFTSLSIGPHLYVIGGSLFDTRSFPIDRPSPSSAVFRFDFNTSSWDFLA 173

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PML+PRGSFACAAVP SG+ILVAG                                    
Sbjct: 174 PMLTPRGSFACAAVPSSGEILVAGGGSRHTLFSAAGSRMTSVERYDIGRNEWVAMDGLPG 233

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGSGRWRQI 180
                                          GVFP+DEYYRDAVVMEL+NG+G GRWR++
Sbjct: 234 FRAGCAGFFVGEGEEREFWVMGGYGESRTISGVFPIDEYYRDAVVMELKNGNGGGRWREL 293

Query: 181 GDMWEEGERRRLGKIVVIEN-YNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTPFN 240
           GDMWEEGER RLGK+VVIE+  + G+P +FMLDG++  RY MASNRW +ESR+PRK P N
Sbjct: 294 GDMWEEGERVRLGKVVVIEDGDDRGRPAVFMLDGNDIFRYNMASNRWFKESRIPRKAPCN 353

Query: 241 SSYGFVALNRELYVISFLK-TESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPFH 247
           S +GFV L+ EL+ I+ LK  E+ E RR R HK+ G+LY+QIYNP+KKTWRSL+T+SPFH
Sbjct: 354 SLFGFVVLDGELHAITLLKAVETTETRRSRLHKRAGTLYIQIYNPKKKTWRSLITKSPFH 413

[Close]

BLAST of Lsi05G009960 vs. NCBI nr
Match: XP_038888356.1 (F-box/kelch-repeat protein OR23 isoform X1 [Benincasa hispida])

HSP 1 Score: 479.2 bits (1232), Expect = 2.2e-131
Identity = 238/313 (76.04%), Postives = 243/313 (77.64%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRS+PIDRPSSSSSAFRFDFHS FWEPIS
Sbjct: 103 MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSFPIDRPSSSSSAFRFDFHSFFWEPIS 162

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACAAVPDSGQILVAG                                    
Sbjct: 163 PMLSPRGSFACAAVPDSGQILVAGGGSRHTMFAAAGSRMSSVERYDVERDEWVALDGLPR 222

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGSGRWRQI 180
                                          GVFPVDEYYRDAVVMELRNGHG+G WRQI
Sbjct: 223 FRAGCVGFFVRNGDKREFWVMGGYGESRTISGVFPVDEYYRDAVVMELRNGHGTGMWRQI 282

Query: 181 GDMWEEGERRRLGKIVVIENYNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTPFNS 240
           GDMWEEGERRRLGKIVVIENY+HGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTPFNS
Sbjct: 283 GDMWEEGERRRLGKIVVIENYSHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTPFNS 342

Query: 241 SYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPFHHP 247
           SYGFVALNRELYVIS+LKTES EARRLRHHKKGGSLYMQIYNPEKKTWRSL+TRSPFHHP
Sbjct: 343 SYGFVALNRELYVISYLKTESGEARRLRHHKKGGSLYMQIYNPEKKTWRSLITRSPFHHP 402

[Close]

BLAST of Lsi05G009960 vs. NCBI nr
Match: XP_038888357.1 (F-box/kelch-repeat protein OR23 isoform X2 [Benincasa hispida])

HSP 1 Score: 458.0 bits (1177), Expect = 5.2e-125
Identity = 231/313 (73.80%), Postives = 236/313 (75.40%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRS+PIDRPSSSSSAFRFDFHS FWEPIS
Sbjct: 103 MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSFPIDRPSSSSSAFRFDFHSFFWEPIS 162

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACAAVPDSGQILVAG                                    
Sbjct: 163 PMLSPRGSFACAAVPDSGQILVAGGGSRHTMFAAAGSRMSSVERYDVERDEWVALDGLPR 222

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGSGRWRQI 180
                                          GVFPVDEYYRDAVVMELRNGHG+G WRQI
Sbjct: 223 FRAGCVGFFVRNGDKREFWVMGGYGESRTISGVFPVDEYYRDAVVMELRNGHGTGMWRQI 282

Query: 181 GDMWEEGERRRLGKIVVIENYNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTPFNS 240
           GDMWEEGERRRLGKIVVIENY+HGQPGIFMLDGDEFL       RWVEESRVPRKTPFNS
Sbjct: 283 GDMWEEGERRRLGKIVVIENYSHGQPGIFMLDGDEFL-------RWVEESRVPRKTPFNS 342

Query: 241 SYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPFHHP 247
           SYGFVALNRELYVIS+LKTES EARRLRHHKKGGSLYMQIYNPEKKTWRSL+TRSPFHHP
Sbjct: 343 SYGFVALNRELYVISYLKTESGEARRLRHHKKGGSLYMQIYNPEKKTWRSLITRSPFHHP 402

[Close]

BLAST of Lsi05G009960 vs. NCBI nr
Match: XP_022931209.1 (F-box/kelch-repeat protein OR23 [Cucurbita moschata])

HSP 1 Score: 447.6 bits (1150), Expect = 7.0e-122
Identity = 227/316 (71.84%), Postives = 239/316 (75.63%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDF++S WEPIS
Sbjct: 103 MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFYASLWEPIS 162

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACAAVP SGQILVAG                                    
Sbjct: 163 PMLSPRGSFACAAVPGSGQILVAGGGSRHTMFAAAGSRMSSVERYDVERDEWVALDGLPR 222

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGS--GRWR 180
                                          GVFPVDEYYRDAVV+ELRNG+G+  GRWR
Sbjct: 223 FRAGCVGFFVGNGEKREFWVMGGYGESRTISGVFPVDEYYRDAVVLELRNGNGNGGGRWR 282

Query: 181 QIGDMWEEGERRRLGKIVVIENY-NHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTP 240
           QIGDMWEEGERRRLGKIVVIE++ NHGQPGIFMLDGDEF RYEM SNRWVEESRVPRKTP
Sbjct: 283 QIGDMWEEGERRRLGKIVVIEDHRNHGQPGIFMLDGDEFFRYEMTSNRWVEESRVPRKTP 342

Query: 241 FNSSYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPF 247
           FNSSYGFVALN ELYVISFLKTESAEARRLRHHKKGGSLYMQIY+P KKTWRSL+TRSPF
Sbjct: 343 FNSSYGFVALNGELYVISFLKTESAEARRLRHHKKGGSLYMQIYDPVKKTWRSLITRSPF 402

[Close]

BLAST of Lsi05G009960 vs. NCBI nr
Match: KAG7036328.1 (F-box/kelch-repeat protein OR23 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.4 bits (1147), Expect = 1.6e-121
Identity = 226/316 (71.52%), Postives = 239/316 (75.63%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFR+DF++S WEPIS
Sbjct: 103 MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRYDFYASLWEPIS 162

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACAAVP SGQILVAG                                    
Sbjct: 163 PMLSPRGSFACAAVPGSGQILVAGGGSRHTMFAAAGSRMSSVERYDVERDEWVALDGLPR 222

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGS--GRWR 180
                                          GVFPVDEYYRDAVV+ELRNG+G+  GRWR
Sbjct: 223 FRAGCVGFFVGNGEKREFWVMGGYGESRTISGVFPVDEYYRDAVVLELRNGNGNGGGRWR 282

Query: 181 QIGDMWEEGERRRLGKIVVIE-NYNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTP 240
           QIGDMWEEGERRRLGKIVVIE ++NHGQPGIFMLDGDEF RYEM SNRWVEESRVPRKTP
Sbjct: 283 QIGDMWEEGERRRLGKIVVIEDHHNHGQPGIFMLDGDEFFRYEMTSNRWVEESRVPRKTP 342

Query: 241 FNSSYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPF 247
           FNSSYGFVALN ELYVISFLKTESAEARRLRHHKKGGSLYMQIY+P KKTWRSL+TRSPF
Sbjct: 343 FNSSYGFVALNGELYVISFLKTESAEARRLRHHKKGGSLYMQIYDPVKKTWRSLITRSPF 402

[Close]

BLAST of Lsi05G009960 vs. NCBI nr
Match: XP_023534511.1 (F-box/kelch-repeat protein OR23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 445.3 bits (1144), Expect = 3.5e-121
Identity = 226/316 (71.52%), Postives = 238/316 (75.32%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDF++S WEPIS
Sbjct: 103 MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFYASLWEPIS 162

Query: 61  PMLSPRGSFACAAVPDSGQILVAG------------------------------------ 120
           PMLSPRGSFACAAVP SGQILVAG                                    
Sbjct: 163 PMLSPRGSFACAAVPGSGQILVAGGGSRHTMFAAAGSRMSSVERYDVERDEWVALDGLPR 222

Query: 121 -------------------------------GVFPVDEYYRDAVVMELRNGHGS--GRWR 180
                                          GVFPVDEYYRDAVV+ELRNG+G+  GRWR
Sbjct: 223 FRAGCVGFFVGNGEKREFWVMGGYGESRTISGVFPVDEYYRDAVVLELRNGNGNGGGRWR 282

Query: 181 QIGDMWEEGERRRLGKIVVIE-NYNHGQPGIFMLDGDEFLRYEMASNRWVEESRVPRKTP 240
           QIGDMWEEGERRRLGKIVVIE ++NHGQPGIFMLDGDEF RYEM SNRWVEESRVPRKTP
Sbjct: 283 QIGDMWEEGERRRLGKIVVIEDHHNHGQPGIFMLDGDEFFRYEMTSNRWVEESRVPRKTP 342

Query: 241 FNSSYGFVALNRELYVISFLKTESAEARRLRHHKKGGSLYMQIYNPEKKTWRSLVTRSPF 247
           FNSSYGFVALN ELYVISFLKTESAEARRLRHHKKGG LYMQIY+P KKTWRSL+TRSPF
Sbjct: 343 FNSSYGFVALNGELYVISFLKTESAEARRLRHHKKGGLLYMQIYDPVKKTWRSLITRSPF 402

[Close]

BLAST of Lsi05G009960 vs. TAIR 10
Match: AT4G03030.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-70
Identity = 141/322 (43.79%), Postives = 184/322 (57.14%), Query Frame = 0


Query: 1   MPCNPHVYGLCNFTPISLGPHLYVIGGSLFDTRSYPIDRPSSSSSAFRFDFHSSFWEPIS 60
           MPCNPHVYGLCNF  ++LGP++YV+GGS FDTRSYP+D P  +SS FR+ F  S WE +S
Sbjct: 125 MPCNPHVYGLCNFVAVALGPYVYVLGGSAFDTRSYPLDVPLPTSSVFRYSFVKSVWERLS 184

Query: 61  PMLSPRGSFACAAVPDS-GQILVAG----------------------------------- 120
           PM+SPRGSFACAA+P S G+I+VAG                                   
Sbjct: 185 PMMSPRGSFACAAMPGSCGRIIVAGGGSRHTLFGAAGSRMSSVEMYDVEKDEWRVMNELP 244

Query: 121 ---------------------------------------GVFPVDEYYRDAVVMELRNGH 180
                                                  G+ PVDEYY+DAVVM+LR   
Sbjct: 245 RFRAGCVGFLVENEKEKEKEEEGREFWVMGGYGGSRTVSGILPVDEYYKDAVVMDLR-VD 304

Query: 181 GSGRWRQIGDMWEEGERRRLGKIVVIENYNHGQPGIFMLDGDEFLRYEMASNRWVEESRV 240
           G  +WR +GDMW E ER +LGKIV ++    G+P  FMLD D  LRYEM  NRW +ES V
Sbjct: 305 GGEKWRVVGDMWGEEERPKLGKIVAVD---CGKPVFFMLDKDWILRYEMGLNRWRKESSV 364

Query: 241 PRKTPFNSSYGFVALNRELYVISFLKTES-AEARRLRHHKKGGSLYMQIYNPEKKTWRSL 247
           P+K  ++   GFVALN EL+V+  L   +  + R  R  +K GSL + +Y+P+KKTWRS+
Sbjct: 365 PKKAHYDKPVGFVALNGELHVMILLDGYNLMDTRHTRQQRKAGSLMIHMYDPKKKTWRSV 424

The following BLAST results are available for this feature:

BLAST of Lsi05G009960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0V7S6	1.9e-69	43.79	F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana OX=3702 GN=OR23 PE=2 SV=...	[more]

BLAST of Lsi05G009960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETP2	3.4e-122	71.84	F-box/kelch-repeat protein OR23 OS=Cucurbita moschata OX=3662 GN=LOC111437456 PE...	[more]
A0A6J1K4P3	2.9e-121	70.75	F-box/kelch-repeat protein OR23 OS=Cucurbita maxima OX=3661 GN=LOC111491154 PE=4...	[more]
A0A1S3CFS3	3.6e-116	70.70	F-box/kelch-repeat protein OR23 OS=Cucumis melo OX=3656 GN=LOC103500378 PE=4 SV=...	[more]
A0A6P4AQQ1	9.3e-96	56.65	F-box/kelch-repeat protein OR23 OS=Ziziphus jujuba OX=326968 GN=LOC107425869 PE=...	[more]
A0A4Y1S2G1	8.7e-94	54.92	Galactose oxidase/kelch repeat superfamily protein OS=Prunus dulcis OX=3755 GN=P...	[more]

BLAST of Lsi05G009960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888356.1	2.2e-131	76.04	F-box/kelch-repeat protein OR23 isoform X1 [Benincasa hispida]	[more]
XP_038888357.1	5.2e-125	73.80	F-box/kelch-repeat protein OR23 isoform X2 [Benincasa hispida]	[more]
XP_022931209.1	7.0e-122	71.84	F-box/kelch-repeat protein OR23 [Cucurbita moschata]	[more]
KAG7036328.1	1.6e-121	71.52	F-box/kelch-repeat protein OR23 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023534511.1	3.5e-121	71.52	F-box/kelch-repeat protein OR23 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi05G009960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03030.1	1.3e-70	43.79	Galactose oxidase/kelch repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006652	Kelch repeat type 1	SMART	SM00612	kelc_smart	coord: 21..76 e-value: 1.8E-5 score: 34.1
IPR006652	Kelch repeat type 1	PFAM	PF01344	Kelch_1	coord: 10..62 e-value: 1.4E-6 score: 27.7
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 1..236 e-value: 4.0E-20 score: 74.0
IPR015915	Kelch-type beta propeller	SUPERFAMILY	117281	Kelch motif	coord: 7..230
None	No IPR available	PANTHER	PTHR47850	F-BOX/KELCH-REPEAT PROTEIN OR23	coord: 85..246 coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009960.1	Lsi05G009960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding