Lsi05G009940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G009940
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr05: 17364153 .. 17364413 (-)
RNA-Seq ExpressionLsi05G009940
SyntenyLsi05G009940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTTTCTTTCCTTTTTGCCATTTTGCTTCTTCTTATCAACACTCATAAGCTTGAAGGTGGCAGAATAATGAAAGAAGAGAACCAAAAATGGTCAACGGTGATGCTTCTCCAGTCATTGGAGAGGGCACCGGTTCCTCCCTCTGCAAGAAATGGTGGCACCAATATTCCAGTGCCGGTCCGGCCTAGGGCTTTCGCTGGAAAATCCAGTTCGGCACCATTGCCGGTACAACCCTATCAAAATCATGTTTAG

mRNA sequence

ATGAAGATCCAATTTTCTTTCCTTTTTGCCATTTTGCTTCTTCTTATCAACACTCATAAGCTTGAAGGTGGCAGAATAATGAAAGAAGAGAACCAAAAATGGTCAACGGTGATGCTTCTCCAGTCATTGGAGAGGGCACCGGTTCCTCCCTCTGCAAGAAATGGTGGCACCAATATTCCAGTGCCGGTCCGGCCTAGGGCTTTCGCTGGAAAATCCAGTTCGGCACCATTGCCGGTACAACCCTATCAAAATCATGTTTAG

Coding sequence (CDS)

ATGAAGATCCAATTTTCTTTCCTTTTTGCCATTTTGCTTCTTCTTATCAACACTCATAAGCTTGAAGGTGGCAGAATAATGAAAGAAGAGAACCAAAAATGGTCAACGGTGATGCTTCTCCAGTCATTGGAGAGGGCACCGGTTCCTCCCTCTGCAAGAAATGGTGGCACCAATATTCCAGTGCCGGTCCGGCCTAGGGCTTTCGCTGGAAAATCCAGTTCGGCACCATTGCCGGTACAACCCTATCAAAATCATGTTTAG

Protein sequence

MKIQFSFLFAILLLLINTHKLEGGRIMKEENQKWSTVMLLQSLERAPVPPSARNGGTNIPVPVRPRAFAGKSSSAPLPVQPYQNHV
Homology
BLAST of Lsi05G009940 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 1  MKIQFSFLFAILLLLINTHKLEGGRIMKEENQKWS--TVMLLQSLERAPVPPSARNGGTN 60
          MKIQFSFL AIL+LL NTH L+  R +K++ Q WS    +L QSL+R PVPPSA+NG TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVRPRAFAGKSSSA 76
          IPVPV  RAFAGK+S+A
Sbjct: 61 IPVPVGQRAFAGKTSAA 77

BLAST of Lsi05G009940 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 1  MKIQFSFLFAILLLLINTHKLEGGRIMKEENQKWSTVMLLQSLERAPVPPSARNGGTNIP 60
          MKIQF+F FAIL+LL N H L+  R MK++ +KWS +++ QSL+RAPVPPS R+G TNIP
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWS-MLIQQSLQRAPVPPSTRDGDTNIP 60

Query: 61 VPVRPRAFAGKSSSAP 77
          VP+  +AFAGKS+  P
Sbjct: 61 VPLGQQAFAGKSTVPP 75

BLAST of Lsi05G009940 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-18
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MKIQFSFLFAILLLLINTHKLEGGRIMKEENQKWSTVMLLQSLERAPVPPSARNGGTNIP 60
          MKIQF+FL AIL++L N H+L+  R MKE+ QKWS ++L QSL+RAPVPPSA+NGGT IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPVRPRAFAGKSSSAPLPVQPYQNHV 87
          VP+  R+F GKS+  P P   Y + V
Sbjct: 61 VPLGQRSFVGKST--PSPAHSYHHQV 84

BLAST of Lsi05G009940 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 9.6e-18
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 1  MKIQFSFLFAILLLLINTHKLEGGRIMKEENQKWSTVMLLQSLERAPVPPSARNGGTNIP 60
          MKIQF+FL AIL++L N H+L+  R MKE+ QKWS ++L QSL+RAPVPP+A+NGGT IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 61 VPVRPRAFAGKSSSAPLPVQPYQNHV 87
           P+  RAF GKS+  P P   Y + V
Sbjct: 61 TPLGQRAFVGKST--PSPAHSYHHQV 84

BLAST of Lsi05G009940 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MKIQFSFLFAILLLLINTHKLEGGRIMKEENQKWSTVMLLQSLERAPVPPSARNGGTNIP 60
          MKIQF+FL AI++LL N H+L+  R MK++ QKWS ++L QSL+RAPVPPSA+NGGT IP
Sbjct: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWS-ILLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPVRPRAFAGKSSSAPLPVQPYQNHV 87
          VP+  RAF GKS+  P P   Y + V
Sbjct: 61 VPLGQRAFVGKST--PSPAHSYHHQV 83

BLAST of Lsi05G009940 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 1  MKIQFSFLFAILLLLINTHKLEGGRIMKEENQKWSTVMLLQSLERAPVPPSARNGGTNIP 60
          MKIQF+FL AIL++L N H+L+  R MKE+ QKWS ++L QSL+R PVPPSA+NGGT IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLKRVPVPPSAQNGGTTIP 60

Query: 61 VPVRPRAFAGKSSSAPLPVQPYQNHV 87
            +  RAF GKS+  P P   Y + V
Sbjct: 61 TQLGQRAFVGKST--PSPAHSYHHQV 84

BLAST of Lsi05G009940 vs. NCBI nr
Match: KGN57926.1 (hypothetical protein Csa_011112 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 1  MKIQFSFLFAILLLLINTHKLEGGRIMKEENQKWS--TVMLLQSLERAPVPPSARNGGTN 60
          MKIQFSFL AIL+LL NTH L+  R +K++ Q WS    +L QSL+R PVPPSA+NG TN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVRPRAFAGKSSSA 76
          IPVPV  RAFAGK+S+A
Sbjct: 61 IPVPVGQRAFAGKTSAA 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCY51.1e-1664.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
A0A5D3B7771.3e-1560.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG6571503.11.9e-1859.30hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.19.6e-1858.14hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571505.12.8e-1759.30hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571501.11.1e-1656.98hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57926.12.4e-1664.94hypothetical protein Csa_011112 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009940.1Lsi05G009940.1mRNA