Lsi05G009740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PRA1 family protein
Location	chr05: 16981086 .. 16981661 (-)
RNA-Seq Expression	Lsi05G009740
Synteny	Lsi05G009740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTGTTCAGCCATCTCCATATGGCTTCTCTGAAACTTCCATTCTATCACGCGCCAGAGCCGCCTCCGATTCCGTTTACGCCACTTTACGGCCATGGCGGGAGCTTCTTCAGCCGTTATCGTCCTTTACCCGCCCTACATCCGTTGGCGAGGCGACCATTCGGTGTAAGCGTAATCTCAAGTACTTTCGTGTTAATTACACCTTCATCGTTTTGCTCATTCTCTTTCTCAGCCTCCTCTGGCACCCTGTTTCATTGATTGTGTTCTTGATCGTGTTCGTTGCGTGGTTCTTTCTTTATTTTTTCCGGGACGAGCCCTTGGAGGTGTTTAATCGTGTTGTTGATGATCGAGTTGTATTGGCTCTGCTTGGATTGGTCACAATTTTCGCTTTGGTGTTGACGGATGTGTCGTTGAACGTATTGATTTCGATTTTGATTGGGGTTTTTCTTGTTTTGGTACATGCCGCCTTTAGGGTTACGGATGATTTGTATATTGATGAGCAAGAAGTCGCCGATGGAGGGTTGCTTTCGGTTGTCGGCAGTCCGACTCGTACAGGGTACAGCCGAATCTAG

mRNA sequence

ATGTCCTCTGTTCAGCCATCTCCATATGGCTTCTCTGAAACTTCCATTCTATCACGCGCCAGAGCCGCCTCCGATTCCGTTTACGCCACTTTACGGCCATGGCGGGAGCTTCTTCAGCCGTTATCGTCCTTTACCCGCCCTACATCCGTTGGCGAGGCGACCATTCGGTGTAAGCGTAATCTCAAGTACTTTCGTGTTAATTACACCTTCATCGTTTTGCTCATTCTCTTTCTCAGCCTCCTCTGGCACCCTGTTTCATTGATTGTGTTCTTGATCGTGTTCGTTGCGTGGTTCTTTCTTTATTTTTTCCGGGACGAGCCCTTGGAGGTGTTTAATCGTGTTGTTGATGATCGAGTTGTATTGGCTCTGCTTGGATTGGTCACAATTTTCGCTTTGGTGTTGACGGATGTGTCGTTGAACGTATTGATTTCGATTTTGATTGGGGTTTTTCTTGTTTTGGTACATGCCGCCTTTAGGGTTACGGATGATTTGTATATTGATGAGCAAGAAGTCGCCGATGGAGGGTTGCTTTCGGTTGTCGGCAGTCCGACTCGTACAGGGTACAGCCGAATCTAG

Coding sequence (CDS)

ATGTCCTCTGTTCAGCCATCTCCATATGGCTTCTCTGAAACTTCCATTCTATCACGCGCCAGAGCCGCCTCCGATTCCGTTTACGCCACTTTACGGCCATGGCGGGAGCTTCTTCAGCCGTTATCGTCCTTTACCCGCCCTACATCCGTTGGCGAGGCGACCATTCGGTGTAAGCGTAATCTCAAGTACTTTCGTGTTAATTACACCTTCATCGTTTTGCTCATTCTCTTTCTCAGCCTCCTCTGGCACCCTGTTTCATTGATTGTGTTCTTGATCGTGTTCGTTGCGTGGTTCTTTCTTTATTTTTTCCGGGACGAGCCCTTGGAGGTGTTTAATCGTGTTGTTGATGATCGAGTTGTATTGGCTCTGCTTGGATTGGTCACAATTTTCGCTTTGGTGTTGACGGATGTGTCGTTGAACGTATTGATTTCGATTTTGATTGGGGTTTTTCTTGTTTTGGTACATGCCGCCTTTAGGGTTACGGATGATTTGTATATTGATGAGCAAGAAGTCGCCGATGGAGGGTTGCTTTCGGTTGTCGGCAGTCCGACTCGTACAGGGTACAGCCGAATCTAG

Protein sequence

MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRNLKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVVLALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVVGSPTRTGYSRI

Homology

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BLAST of Lsi05G009740 vs. ExPASy Swiss-Prot
Match: Q9FRR1 (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.6e-34
Identity = 89/200 (44.50%), Postives = 125/200 (62.50%), Query Frame = 0


Query: 5   QPSPYGF-------------SETSIL----SRARAASDSVYATLRPWRELLQPLSSFTRP 64
           +P PYG+             S T+I+    +RA+  + S+  TLRPWRE+L  LS+ + P
Sbjct: 4   KPPPYGYGGAGGGGVGPSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILD-LSALSLP 63

Query: 65  TSVGEATIRCKRNLKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRD-- 124
               EA    K N+ YFR NY   VL I+FL L++HP+S+I F++VF+ W  LYF RD  
Sbjct: 64  RGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDAN 123

Query: 125 EPLEVFNRVVDDRVVLALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLY 184
           + + +  + VDD++VL LL LVT+ ALV TDV  NVL+S++IG+ +V  H AFR TDDL+
Sbjct: 124 DSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLF 183

Query: 185 IDEQEVADGGLLSVVGSPTR 186
           +DE+    GGL+S  GS  R
Sbjct: 184 LDEESARRGGLVS-AGSGNR 201

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BLAST of Lsi05G009740 vs. ExPASy Swiss-Prot
Match: Q9LIC6 (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-28
Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 17  LSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRNLKYFRVNYTFIVLLIL 76
           LSRA+    +  AT R WR +     S   P  V +A  R K NL YFR+NY  +VL+++
Sbjct: 22  LSRAKHRIKAGLATRRAWRVMFD-FHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVI 81

Query: 77  FLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVVLALLGLVTIFALVLTD 136
           F SL+WHP SLIVF ++ V W FLYF RDEP+++F   +DDR VL +L ++T+  L+LT+
Sbjct: 82  FFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTN 141

Query: 137 VSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQ 170
            + N++ +++ G  LVL+H+  R T+DL++DE+
Sbjct: 142 ATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173

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BLAST of Lsi05G009740 vs. ExPASy Swiss-Prot
Match: Q9C889 (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-27
Identity = 85/184 (46.20%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 2   SSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRNL 61
           +S  PSP    +   +SRA+    S  AT RPW+ +     S T P    +A  R K NL
Sbjct: 9   TSSHPSP--AIDLEYISRAKHRIKSGLATRRPWKSMFD-FESMTLPHGFFDAISRIKTNL 68

Query: 62  KYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVVL 121
            YFR NY   VL ILFLSLL+HP SLIV  I+ V W FLYF RDEPL VF   +DDR VL
Sbjct: 69  GYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVL 128

Query: 122 ALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVA---DGGLLS 181
             L ++T+  L+LT  + N+L S+L    LVL+HAA R +D+L++DE+  A     GL+S
Sbjct: 129 IGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEASGLMS 188

Query: 182 VVGS 183
              S
Sbjct: 189 YPSS 189

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BLAST of Lsi05G009740 vs. ExPASy Swiss-Prot
Match: Q9FZ63 (PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 66/144 (45.83%), Postives = 95/144 (65.97%), Query Frame = 0


Query: 29  ATLRPWRELLQPLSSFTRPTSVGEATIRCKRNLKYFRVNYTFIVLLILFLSLLWHPVSLI 88
           AT RPW+++L  L SF  P  +     R + N  YF+ NYT +VL  +FLSL+W+P SL+
Sbjct: 34  ATRRPWKQMLD-LGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLL 93

Query: 89  VFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVVLALLGLVTIFALVLTDVSLNVLISILIG 148
           V L +  AW FLYF RDEPL VF+R +D R+VL ++ ++T+  L LTD  LN+ ++I+ G
Sbjct: 94  VLLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAG 153

Query: 149 VFLVLVHAAFRVTDDLYIDEQEVA 173
              VL HAA R T+DL+  ++E +
Sbjct: 154 ALAVLSHAAVRKTEDLFQTDEETS 176

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BLAST of Lsi05G009740 vs. ExPASy Swiss-Prot
Match: Q9SIY7 (PRA1 family protein B2 OS=Arabidopsis thaliana OX=3702 GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.4e-26
Identity = 79/184 (42.93%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 5   QPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRNLKYF 64
           QP     +  + LSR  ++     +  RPW EL+   SSF RP S+ ++  R ++NL YF
Sbjct: 20  QPPINSHAFRTFLSRLSSSLRESLSQRRPWLELVD-RSSFARPDSLTDSFSRIRKNLAYF 79

Query: 65  RVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFR--DEPLEVFNRVVDDRVVLA 124
           +VNY+ IV L+L  SLL HP SL+V L +  +W FLY FR  D+PL +F R   DR  L 
Sbjct: 80  KVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLL 139

Query: 125 LLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVVGS 184
            L L TI  + +T V   +  ++ IG+ +V +H AFRV DDL++DEQE A+ GLLS +G+
Sbjct: 140 GLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGN 199

Query: 185 PTRT 187
              T
Sbjct: 200 SAAT 202

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BLAST of Lsi05G009740 vs. ExPASy TrEMBL
Match: A0A0A0LKV0 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G224290 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.7e-87
Identity = 179/191 (93.72%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MSS QPSPYGF+ETSILSRARAASDS+YATLRPWRELLQPLSSFTRP+SVGEA IRCKRN
Sbjct: 1   MSSNQPSPYGFTETSILSRARAASDSLYATLRPWRELLQPLSSFTRPSSVGEAIIRCKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVF+RVVDDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFHRVVDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           L LLG+VTIFALVLTDVSLNVLISILIGVFLVL+HA  RVTDDLYIDEQEVADGGLLSVV
Sbjct: 121 LVLLGIVTIFALVLTDVSLNVLISILIGVFLVLIHAGSRVTDDLYIDEQEVADGGLLSVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTRT YSRI
Sbjct: 181 GSPTRTEYSRI 191

[Close]

BLAST of Lsi05G009740 vs. ExPASy TrEMBL
Match: A0A5A7UNI5 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001030 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.1e-87
Identity = 178/191 (93.19%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MSS QP PYGF+ETSILSRARAASDSVYATLRPWRELLQPLSSFTRP+SVGEA IRCKRN
Sbjct: 1   MSSNQPYPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSVGEAIIRCKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFRVNYTFIVLLILFLSLLWHPVSLIVFL+VFVAWFFLYFFRDEPLEVFNRVVDDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLVVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           L LLG+VTIFALVLTDVSLNVL+SILIGVFLVLVHA  RV+DDLYIDEQEVADGGLLSVV
Sbjct: 121 LVLLGIVTIFALVLTDVSLNVLVSILIGVFLVLVHAGSRVSDDLYIDEQEVADGGLLSVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTRT YSRI
Sbjct: 181 GSPTRTEYSRI 191

[Close]

BLAST of Lsi05G009740 vs. ExPASy TrEMBL
Match: A0A1S3BMR2 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103491252 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.1e-87
Identity = 178/191 (93.19%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MSS QP PYGF+ETSILSRARAASDSVYATLRPWRELLQPLSSFTRP+SVGEA IRCKRN
Sbjct: 1   MSSNQPYPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSVGEAIIRCKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFRVNYTFIVLLILFLSLLWHPVSLIVFL+VFVAWFFLYFFRDEPLEVFNRVVDDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLVVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           L LLG+VTIFALVLTDVSLNVL+SILIGVFLVLVHA  RV+DDLYIDEQEVADGGLLSVV
Sbjct: 121 LVLLGIVTIFALVLTDVSLNVLVSILIGVFLVLVHAGSRVSDDLYIDEQEVADGGLLSVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTRT YSRI
Sbjct: 181 GSPTRTEYSRI 191

[Close]

BLAST of Lsi05G009740 vs. ExPASy TrEMBL
Match: A0A6J1CVS9 (PRA1 family protein OS=Momordica charantia OX=3673 GN=LOC111015242 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.5e-80
Identity = 165/191 (86.39%), Postives = 176/191 (92.15%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MSS  P PYGF+ETS LSRA AAS SVY +LRPWR+L QPLSSFTRP SVGEATIR KRN
Sbjct: 1   MSSASPPPYGFTETSFLSRAGAASGSVYGSLRPWRQLFQPLSSFTRPASVGEATIRSKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYF RDEPLEVFNRV+DDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFSRDEPLEVFNRVLDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           LA+LGLVTI ALVLTDVSLNV +SILIGVFLV +HAAFRVT+DLY+DEQEVADGGL+SVV
Sbjct: 121 LAVLGLVTIVALVLTDVSLNVFVSILIGVFLVSLHAAFRVTEDLYMDEQEVADGGLISVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTR GYSR+
Sbjct: 181 GSPTRAGYSRV 191

[Close]

BLAST of Lsi05G009740 vs. ExPASy TrEMBL
Match: A0A6J1EWX4 (PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111437276 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 162/191 (84.82%), Postives = 176/191 (92.15%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MS+V PSPY F+ETSIL+     SDS YATLRPWRELLQPLSSFTRP+S+GEA+IRCKRN
Sbjct: 1   MSTVHPSPYAFTETSILT-----SDSAYATLRPWRELLQPLSSFTRPSSLGEASIRCKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFR NYT +VLLILF SLLWHPVSLIVFLIVFVAWFFLYFFRD+PLE+F+RVVDDRVV
Sbjct: 61  LKYFRSNYTLVVLLILFFSLLWHPVSLIVFLIVFVAWFFLYFFRDQPLELFHRVVDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           LA+LGLVTI  LVLTDVS NVL+SILIGVFLVL HAAFRVT+DLYIDEQEVADGGLLSVV
Sbjct: 121 LAVLGLVTIVVLVLTDVSFNVLLSILIGVFLVLTHAAFRVTEDLYIDEQEVADGGLLSVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTRTGYSR+
Sbjct: 181 GSPTRTGYSRV 186

[Close]

BLAST of Lsi05G009740 vs. NCBI nr
Match: XP_038887336.1 (PRA1 family protein E-like [Benincasa hispida])

HSP 1 Score: 342.0 bits (876), Expect = 3.2e-90
Identity = 183/191 (95.81%), Postives = 188/191 (98.43%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MSSVQPSPYGF+ETSILSRARAASDSVYATLRPWRELLQPLSSFTRP+S+GEATIRCKRN
Sbjct: 1   MSSVQPSPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSIGEATIRCKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFRVNYTFIVLLILF SLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFFSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           LALLGLVTI ALVLTDV LNVL+SILIGVFLVL+HAAFRVTDDLYIDEQEVADGGLLSVV
Sbjct: 121 LALLGLVTIVALVLTDVLLNVLVSILIGVFLVLIHAAFRVTDDLYIDEQEVADGGLLSVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTRTGYSRI
Sbjct: 181 GSPTRTGYSRI 191

[Close]

BLAST of Lsi05G009740 vs. NCBI nr
Match: XP_004145378.1 (PRA1 family protein E [Cucumis sativus] >KGN61689.1 hypothetical protein Csa_006382 [Cucumis sativus])

HSP 1 Score: 331.3 bits (848), Expect = 5.7e-87
Identity = 179/191 (93.72%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MSS QPSPYGF+ETSILSRARAASDS+YATLRPWRELLQPLSSFTRP+SVGEA IRCKRN
Sbjct: 1   MSSNQPSPYGFTETSILSRARAASDSLYATLRPWRELLQPLSSFTRPSSVGEAIIRCKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVF+RVVDDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFHRVVDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           L LLG+VTIFALVLTDVSLNVLISILIGVFLVL+HA  RVTDDLYIDEQEVADGGLLSVV
Sbjct: 121 LVLLGIVTIFALVLTDVSLNVLISILIGVFLVLIHAGSRVTDDLYIDEQEVADGGLLSVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTRT YSRI
Sbjct: 181 GSPTRTEYSRI 191

[Close]

BLAST of Lsi05G009740 vs. NCBI nr
Match: XP_008449347.1 (PREDICTED: PRA1 family protein E-like [Cucumis melo] >KAA0057422.1 PRA1 family protein E-like [Cucumis melo var. makuwa] >TYK30121.1 PRA1 family protein E-like [Cucumis melo var. makuwa])

HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86
Identity = 178/191 (93.19%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MSS QP PYGF+ETSILSRARAASDSVYATLRPWRELLQPLSSFTRP+SVGEA IRCKRN
Sbjct: 1   MSSNQPYPYGFTETSILSRARAASDSVYATLRPWRELLQPLSSFTRPSSVGEAIIRCKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFRVNYTFIVLLILFLSLLWHPVSLIVFL+VFVAWFFLYFFRDEPLEVFNRVVDDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLVVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           L LLG+VTIFALVLTDVSLNVL+SILIGVFLVLVHA  RV+DDLYIDEQEVADGGLLSVV
Sbjct: 121 LVLLGIVTIFALVLTDVSLNVLVSILIGVFLVLVHAGSRVSDDLYIDEQEVADGGLLSVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTRT YSRI
Sbjct: 181 GSPTRTEYSRI 191

[Close]

BLAST of Lsi05G009740 vs. NCBI nr
Match: XP_022145895.1 (PRA1 family protein E-like [Momordica charantia])

HSP 1 Score: 308.1 bits (788), Expect = 5.1e-80
Identity = 165/191 (86.39%), Postives = 176/191 (92.15%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MSS  P PYGF+ETS LSRA AAS SVY +LRPWR+L QPLSSFTRP SVGEATIR KRN
Sbjct: 1   MSSASPPPYGFTETSFLSRAGAASGSVYGSLRPWRQLFQPLSSFTRPASVGEATIRSKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYF RDEPLEVFNRV+DDRVV
Sbjct: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFSRDEPLEVFNRVLDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           LA+LGLVTI ALVLTDVSLNV +SILIGVFLV +HAAFRVT+DLY+DEQEVADGGL+SVV
Sbjct: 121 LAVLGLVTIVALVLTDVSLNVFVSILIGVFLVSLHAAFRVTEDLYMDEQEVADGGLISVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTR GYSR+
Sbjct: 181 GSPTRAGYSRV 191

[Close]

BLAST of Lsi05G009740 vs. NCBI nr
Match: XP_023533638.1 (PRA1 family protein E-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 163/191 (85.34%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MSSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRN 60
           MS+V PSPY F+ETSIL     ASDS YATLRPWRELLQPLSSFTRP+S+GEA+IRCKRN
Sbjct: 1   MSTVHPSPYAFTETSIL-----ASDSAYATLRPWRELLQPLSSFTRPSSLGEASIRCKRN 60

Query: 61  LKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVV 120
           LKYFR NYT ++LLILF SLLWHPVSLIVFLIVFVAWFFLYFFRD+PLE+F+RVVDDRVV
Sbjct: 61  LKYFRANYTLVLLLILFFSLLWHPVSLIVFLIVFVAWFFLYFFRDQPLELFHRVVDDRVV 120

Query: 121 LALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVV 180
           LA+LGLVTI  LVLTDVSLNVL+SILIGVFLVL HAAFRVT+DLYIDEQEVADGGLLSVV
Sbjct: 121 LAVLGLVTIVVLVLTDVSLNVLLSILIGVFLVLTHAAFRVTEDLYIDEQEVADGGLLSVV 180

Query: 181 GSPTRTGYSRI 192
           GSPTRTGYSR+
Sbjct: 181 GSPTRTGYSRV 186

[Close]

BLAST of Lsi05G009740 vs. TAIR 10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E )

HSP 1 Score: 145.2 bits (365), Expect = 5.4e-35
Identity = 89/200 (44.50%), Postives = 125/200 (62.50%), Query Frame = 0


Query: 5   QPSPYGF-------------SETSIL----SRARAASDSVYATLRPWRELLQPLSSFTRP 64
           +P PYG+             S T+I+    +RA+  + S+  TLRPWRE+L  LS+ + P
Sbjct: 4   KPPPYGYGGAGGGGVGPSSTSNTTIIGTLSARAKQTTQSMITTLRPWREILD-LSALSLP 63

Query: 65  TSVGEATIRCKRNLKYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRD-- 124
               EA    K N+ YFR NY   VL I+FL L++HP+S+I F++VF+ W  LYF RD  
Sbjct: 64  RGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDAN 123

Query: 125 EPLEVFNRVVDDRVVLALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLY 184
           + + +  + VDD++VL LL LVT+ ALV TDV  NVL+S++IG+ +V  H AFR TDDL+
Sbjct: 124 DSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLF 183

Query: 185 IDEQEVADGGLLSVVGSPTR 186
           +DE+    GGL+S  GS  R
Sbjct: 184 LDEESARRGGLVS-AGSGNR 201

[Close]

BLAST of Lsi05G009740 vs. TAIR 10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-29
Identity = 68/153 (44.44%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 17  LSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRNLKYFRVNYTFIVLLIL 76
           LSRA+    +  AT R WR +     S   P  V +A  R K NL YFR+NY  +VL+++
Sbjct: 22  LSRAKHRIKAGLATRRAWRVMFD-FHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVI 81

Query: 77  FLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVVLALLGLVTIFALVLTD 136
           F SL+WHP SLIVF ++ V W FLYF RDEP+++F   +DDR VL +L ++T+  L+LT+
Sbjct: 82  FFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTN 141

Query: 137 VSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQ 170
            + N++ +++ G  LVL+H+  R T+DL++DE+
Sbjct: 142 ATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173

[Close]

BLAST of Lsi05G009740 vs. TAIR 10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-28
Identity = 85/184 (46.20%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 2   SSVQPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRNL 61
           +S  PSP    +   +SRA+    S  AT RPW+ +     S T P    +A  R K NL
Sbjct: 9   TSSHPSP--AIDLEYISRAKHRIKSGLATRRPWKSMFD-FESMTLPHGFFDAISRIKTNL 68

Query: 62  KYFRVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVVL 121
            YFR NY   VL ILFLSLL+HP SLIV  I+ V W FLYF RDEPL VF   +DDR VL
Sbjct: 69  GYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVL 128

Query: 122 ALLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVA---DGGLLS 181
             L ++T+  L+LT  + N+L S+L    LVL+HAA R +D+L++DE+  A     GL+S
Sbjct: 129 IGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEASGLMS 188

Query: 182 VVGS 183
              S
Sbjct: 189 YPSS 189

[Close]

BLAST of Lsi05G009740 vs. TAIR 10
Match: AT1G17700.1 (prenylated RAB acceptor 1.F1 )

HSP 1 Score: 121.3 bits (303), Expect = 8.3e-28
Identity = 66/144 (45.83%), Postives = 95/144 (65.97%), Query Frame = 0


Query: 29  ATLRPWRELLQPLSSFTRPTSVGEATIRCKRNLKYFRVNYTFIVLLILFLSLLWHPVSLI 88
           AT RPW+++L  L SF  P  +     R + N  YF+ NYT +VL  +FLSL+W+P SL+
Sbjct: 34  ATRRPWKQMLD-LGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLL 93

Query: 89  VFLIVFVAWFFLYFFRDEPLEVFNRVVDDRVVLALLGLVTIFALVLTDVSLNVLISILIG 148
           V L +  AW FLYF RDEPL VF+R +D R+VL ++ ++T+  L LTD  LN+ ++I+ G
Sbjct: 94  VLLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAG 153

Query: 149 VFLVLVHAAFRVTDDLYIDEQEVA 173
              VL HAA R T+DL+  ++E +
Sbjct: 154 ALAVLSHAAVRKTEDLFQTDEETS 176

[Close]

BLAST of Lsi05G009740 vs. TAIR 10
Match: AT2G40380.1 (prenylated RAB acceptor 1.B2 )

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-27
Identity = 79/184 (42.93%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 5   QPSPYGFSETSILSRARAASDSVYATLRPWRELLQPLSSFTRPTSVGEATIRCKRNLKYF 64
           QP     +  + LSR  ++     +  RPW EL+   SSF RP S+ ++  R ++NL YF
Sbjct: 20  QPPINSHAFRTFLSRLSSSLRESLSQRRPWLELVD-RSSFARPDSLTDSFSRIRKNLAYF 79

Query: 65  RVNYTFIVLLILFLSLLWHPVSLIVFLIVFVAWFFLYFFR--DEPLEVFNRVVDDRVVLA 124
           +VNY+ IV L+L  SLL HP SL+V L +  +W FLY FR  D+PL +F R   DR  L 
Sbjct: 80  KVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLL 139

Query: 125 LLGLVTIFALVLTDVSLNVLISILIGVFLVLVHAAFRVTDDLYIDEQEVADGGLLSVVGS 184
            L L TI  + +T V   +  ++ IG+ +V +H AFRV DDL++DEQE A+ GLLS +G+
Sbjct: 140 GLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGN 199

Query: 185 PTRT 187
              T
Sbjct: 200 SAAT 202

The following BLAST results are available for this feature:

BLAST of Lsi05G009740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FRR1	7.6e-34	44.50	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]
Q9LIC6	3.6e-28	44.44	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
Q9C889	2.4e-27	46.20	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
Q9FZ63	1.2e-26	45.83	PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1	[more]
Q9SIY7	3.4e-26	42.93	PRA1 family protein B2 OS=Arabidopsis thaliana OX=3702 GN=PRA1B2 PE=1 SV=1	[more]

BLAST of Lsi05G009740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKV0	2.7e-87	93.72	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G224290 PE=3 SV=1	[more]
A0A5A7UNI5	6.1e-87	93.19	PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G...	[more]
A0A1S3BMR2	6.1e-87	93.19	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103491252 PE=3 SV=1	[more]
A0A6J1CVS9	2.5e-80	86.39	PRA1 family protein OS=Momordica charantia OX=3673 GN=LOC111015242 PE=3 SV=1	[more]
A0A6J1EWX4	1.0e-78	84.82	PRA1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111437276 PE=3 SV=1	[more]

BLAST of Lsi05G009740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887336.1	3.2e-90	95.81	PRA1 family protein E-like [Benincasa hispida]	[more]
XP_004145378.1	5.7e-87	93.72	PRA1 family protein E [Cucumis sativus] >KGN61689.1 hypothetical protein Csa_006...	[more]
XP_008449347.1	1.3e-86	93.19	PREDICTED: PRA1 family protein E-like [Cucumis melo] >KAA0057422.1 PRA1 family p...	[more]
XP_022145895.1	5.1e-80	86.39	PRA1 family protein E-like [Momordica charantia]	[more]
XP_023533638.1	4.4e-79	85.34	PRA1 family protein E-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi05G009740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08770.1	5.4e-35	44.50	prenylated RAB acceptor 1.E	[more]
AT3G13720.1	2.6e-29	44.44	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G55190.1	1.7e-28	46.20	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G17700.1	8.3e-28	45.83	prenylated RAB acceptor 1.F1	[more]
AT2G40380.1	2.4e-27	42.93	prenylated RAB acceptor 1.B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 28..168 e-value: 5.5E-48 score: 162.2
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 1..189
None	No IPR available	PANTHER	PTHR19317:SF13	PRA1 FAMILY PROTEIN	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009740.1	Lsi05G009740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane