Lsi05G009610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger CCCH domain-containing protein 6-like
Location	chr05: 16766505 .. 16768279 (+)
RNA-Seq Expression	Lsi05G009610
Synteny	Lsi05G009610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGTATGCTCTTACCCTAACGGGAAACATATGCATCTTTTGGTTGCAGGTTAGGTTGTTCTTGTCTGAGGATTGTCCTTCCCAAGTGGGATTGGGTGCTCAAGATCACCTTCAGGCAAAGGCATCGTGGCTCTTGCATTCAACTGGTCCAGGTTCTGATGACACCTTGCCTCCTGGATTTGAAGTAGCTCATCCAGAGAATCAGTGGCAGATTAAGCTCTCACAAATTCCTGTAAATCAATGGAGATGTCCACCTAAGGTAAGTAGTGATTTCGTTTTCAATTTTATGTTGAACTAGAACTTTGGCTCTGCAAGTTTAACATGAAATTCACGCTCTTTGTCCCATGGCAGTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGTAGAGTTACTAAAAACATTGGAGGGAGGGAGGGAGAAGAAGATGGAGAGAGAGAGGAAGATGAAGTTCCTTGATAAATGTGTGGACTTCAATAGTAAACATTATTGAAGTTGATAAAGTGGAGTTATTTAACTCTGAGTTGTGATGTATGTGGGTCATTGATTATTTTAACCAATTGGTGGAGCAAACACCACCTTAACGTTCATCGGGAGAATTTGATAGTAACTATTTGTTAGAGTACCGATATAATATTAAATTTACCATAACTCATTCGCTTAAGCTTTTGGATTGATTGGTGATTTATCGTGGTATCAAATCAAGAAGTCTCGAGTTTAAACTCCTACATTACCTCCTCACTTAAAATTGAATTTCACTTGTTGGACCTTCCACAAAATTTCAAACCCACAAGTTAGGGGGAGTATTGAAATTAGTCTTTTATTTCCATTTGTTGAGTCAAATTATATGGAATGAATAATTGAACACAACTTATCCACATTAGAATCAAACCTTCAAATCAGTACCTTCATTTTCTTAACTCAGTTATCTAAAAGCAAAATGAATAACAATTATAATTTGATTGTTTTAAAATCTCAAATTGTGCATAAATAAAGTAACAATCTACTTTAGTCAAATCTCAATTTCATAATTGAAGGAAACAAATATTCCTTTAAGACGTTGGGAAAATAAATTGAAATTAAGTTGAATTTTAACGGTTCAGTAAAATAGCATGGGGAAAAATAAAATAAAATAAAATAACCCTTCCAGAATATCAGACTACTCAAACGCTATATAACCTGCCATCTTGTACACAGTGTACATAAAAGCAGACTACACAACCTTGCACCCCAAACATTCTCCAGATCCCCCTGGGGGCGGGTAAGAACTAAACTTTCATTCAGAAAAAACATGACTGTAACAACTGACAACATGAGCACAGAACTTCGTATGAATTATGGAATGAACTTACTTGTATGCTAGCTGCTTTAAGCCTTCATTCCAGCCTTGAAGATGCTGGTCCAAAAGAACACGGGTTAAATCACTTACCTGAAAGACATTGGGTGATCCTAAGATCAATTCTAACATCACTACACCAACGCTCCACATATCATACCTGTTAACATGAAATGGGGATAAATTAACTTTTTTTTTTCCATCAAGCGCAATGAAGCAAAACAAAAGATAAATCATCCAGACATACTAGCCACAAACCAAATGAAGGAGCAACCAAAAGATAGTCACAAGGACGCCAATTGCTTGCTAAGAAAATAA

mRNA sequence

ATGTCTTTTGTTAGGTTGTTCTTGTCTGAGGATTGTCCTTCCCAAGTGGGATTGGGTGCTCAAGATCACCTTCAGGCAAAGGCATCGTGGCTCTTGCATTCAACTGGTCCAGGTTCTGATGACACCTTGCCTCCTGGATTTGAAGTAGCTCATCCAGAGAATCAGTGGCAGATTAAGCTCTCACAAATTCCTGTAAATCAATGGAGATGTCCACCTAAGCGCAATGAAGCAAAACAAAAGATAAATCATCCAGACATACTAGCCACAAACCAAATGAAGGAGCAACCAAAAGATAGTCACAAGGACGCCAATTGCTTGCTAAGAAAATAA

Coding sequence (CDS)

ATGTCTTTTGTTAGGTTGTTCTTGTCTGAGGATTGTCCTTCCCAAGTGGGATTGGGTGCTCAAGATCACCTTCAGGCAAAGGCATCGTGGCTCTTGCATTCAACTGGTCCAGGTTCTGATGACACCTTGCCTCCTGGATTTGAAGTAGCTCATCCAGAGAATCAGTGGCAGATTAAGCTCTCACAAATTCCTGTAAATCAATGGAGATGTCCACCTAAGCGCAATGAAGCAAAACAAAAGATAAATCATCCAGACATACTAGCCACAAACCAAATGAAGGAGCAACCAAAAGATAGTCACAAGGACGCCAATTGCTTGCTAAGAAAATAA

Protein sequence

MSFVRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPKRNEAKQKINHPDILATNQMKEQPKDSHKDANCLLRK

Homology

[Close]

BLAST of Lsi05G009610 vs. ExPASy Swiss-Prot
Match: Q7XM16 (Zinc finger CCCH domain-containing protein 30 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0663200 PE=2 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 8.4e-22
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLFLSED PSQ GL  QD+LQAK SWLLH+ GP SDD+LPPGFE   P N  +I +SQI
Sbjct: 21 VRLFLSEDSPSQAGLRPQDNLQAKGSWLLHAAGPSSDDSLPPGFESLPPSNDLKIDMSQI 80

Query: 64 PVNQWRCPP 73
          P+ +W+CPP
Sbjct: 81 PLIRWKCPP 89

[Close]

BLAST of Lsi05G009610 vs. ExPASy Swiss-Prot
Match: Q56XU4 (Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=At1g19860 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-13
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLF+SED PSQVG  +QDHLQAK+    H     SDD LPPGF      N+ QIKLS I
Sbjct: 19 VRLFISEDSPSQVGSESQDHLQAKSPLASHP----SDDNLPPGFGGPFSANESQIKLSDI 78

Query: 64 PVNQWRC 71
          P+ +W+C
Sbjct: 79 PLIKWKC 81

[Close]

BLAST of Lsi05G009610 vs. ExPASy TrEMBL
Match: A0A0A0LL66 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G366700 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHST--GPGSDDTLPPGFEVAHPENQWQIKLS 63
          VRLF SEDCPSQVGLGAQDHLQAKASWLLHST  G GSDDTLPPGFEVAHPENQWQIKLS
Sbjct: 21 VRLFSSEDCPSQVGLGAQDHLQAKASWLLHSTGLGLGSDDTLPPGFEVAHPENQWQIKLS 80

Query: 64 QIPVNQWRCPPK 74
          QIPVNQWRCPPK
Sbjct: 81 QIPVNQWRCPPK 92

[Close]

BLAST of Lsi05G009610 vs. ExPASy TrEMBL
Match: A0A6J1K6C9 (zinc finger CCCH domain-containing protein 6-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492081 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQI
Sbjct: 21 VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHSENQSQIKLSQI 80

Query: 64 PVNQWRCPPK 74
          PVNQWRCPPK
Sbjct: 81 PVNQWRCPPK 90

[Close]

BLAST of Lsi05G009610 vs. ExPASy TrEMBL
Match: A0A6J1K3Q0 (zinc finger CCCH domain-containing protein 6-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492081 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQI
Sbjct: 21 VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHSENQSQIKLSQI 80

Query: 64 PVNQWRCPPK 74
          PVNQWRCPPK
Sbjct: 81 PVNQWRCPPK 90

[Close]

BLAST of Lsi05G009610 vs. ExPASy TrEMBL
Match: A0A6J1HG26 (zinc finger CCCH domain-containing protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111462672 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQI
Sbjct: 21 VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHSENQSQIKLSQI 80

Query: 64 PVNQWRCPPK 74
          PVNQWRCPPK
Sbjct: 81 PVNQWRCPPK 90

[Close]

BLAST of Lsi05G009610 vs. ExPASy TrEMBL
Match: A0A5A7VH57 (Zinc finger CCCH domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005120 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 67/72 (93.06%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGP--GSDDTLPPGFEVAHPENQWQIKLS 63
          VRLF SEDCPSQVGLGAQDHLQAKASWLLHSTG   GSDDTLPPGFEVAHPENQ QIKLS
Sbjct: 21 VRLFSSEDCPSQVGLGAQDHLQAKASWLLHSTGSGLGSDDTLPPGFEVAHPENQLQIKLS 80

Query: 64 QIPVNQWRCPPK 74
          QIPVNQWRCPPK
Sbjct: 81 QIPVNQWRCPPK 92

[Close]

BLAST of Lsi05G009610 vs. NCBI nr
Match: XP_038884901.1 (zinc finger CCCH domain-containing protein 6 [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAHPENQWQIKLSQI
Sbjct: 21 VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHPENQWQIKLSQI 80

Query: 64 PVNQWRCPPK 74
          PVNQWRCPPK
Sbjct: 81 PVNQWRCPPK 90

[Close]

BLAST of Lsi05G009610 vs. NCBI nr
Match: XP_004152656.1 (zinc finger CCCH domain-containing protein 6 [Cucumis sativus] >KGN62665.1 hypothetical protein Csa_022341 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-31
Identity = 68/72 (94.44%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHST--GPGSDDTLPPGFEVAHPENQWQIKLS 63
          VRLF SEDCPSQVGLGAQDHLQAKASWLLHST  G GSDDTLPPGFEVAHPENQWQIKLS
Sbjct: 21 VRLFSSEDCPSQVGLGAQDHLQAKASWLLHSTGLGLGSDDTLPPGFEVAHPENQWQIKLS 80

Query: 64 QIPVNQWRCPPK 74
          QIPVNQWRCPPK
Sbjct: 81 QIPVNQWRCPPK 92

[Close]

BLAST of Lsi05G009610 vs. NCBI nr
Match: XP_023522523.1 (zinc finger CCCH domain-containing protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQI
Sbjct: 21 VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHSENQSQIKLSQI 80

Query: 64 PVNQWRCPPK 74
          PVNQWRCPPK
Sbjct: 81 PVNQWRCPPK 90

[Close]

BLAST of Lsi05G009610 vs. NCBI nr
Match: XP_022997031.1 (zinc finger CCCH domain-containing protein 6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQI
Sbjct: 21 VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHSENQSQIKLSQI 80

Query: 64 PVNQWRCPPK 74
          PVNQWRCPPK
Sbjct: 81 PVNQWRCPPK 90

[Close]

BLAST of Lsi05G009610 vs. NCBI nr
Match: XP_022997032.1 (zinc finger CCCH domain-containing protein 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-31
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQI
Sbjct: 21 VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHSENQSQIKLSQI 80

Query: 64 PVNQWRCPPK 74
          PVNQWRCPPK
Sbjct: 81 PVNQWRCPPK 90

[Close]

BLAST of Lsi05G009610 vs. TAIR 10
Match: AT1G19860.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-14
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 4  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQI 63
          VRLF+SED PSQVG  +QDHLQAK+    H     SDD LPPGF      N+ QIKLS I
Sbjct: 19 VRLFISEDSPSQVGSESQDHLQAKSPLASHP----SDDNLPPGFGGPFSANESQIKLSDI 78

Query: 64 PVNQWRC 71
          P+ +W+C
Sbjct: 79 PLIKWKC 81

The following BLAST results are available for this feature:

BLAST of Lsi05G009610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XM16	8.4e-22	66.67	Zinc finger CCCH domain-containing protein 30 OS=Oryza sativa subsp. japonica OX...	[more]
Q56XU4	4.2e-13	56.72	Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Lsi05G009610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL66	1.6e-31	94.44	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G366700 P...	[more]
A0A6J1K6C9	2.1e-31	95.71	zinc finger CCCH domain-containing protein 6-like isoform X1 OS=Cucurbita maxima...	[more]
A0A6J1K3Q0	2.1e-31	95.71	zinc finger CCCH domain-containing protein 6-like isoform X2 OS=Cucurbita maxima...	[more]
A0A6J1HG26	2.1e-31	95.71	zinc finger CCCH domain-containing protein 6-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A5A7VH57	3.0e-30	93.06	Zinc finger CCCH domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Lsi05G009610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884901.1	1.2e-33	98.57	zinc finger CCCH domain-containing protein 6 [Benincasa hispida]	[more]
XP_004152656.1	3.3e-31	94.44	zinc finger CCCH domain-containing protein 6 [Cucumis sativus] >KGN62665.1 hypot...	[more]
XP_023522523.1	4.3e-31	95.71	zinc finger CCCH domain-containing protein 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997031.1	4.3e-31	95.71	zinc finger CCCH domain-containing protein 6-like isoform X1 [Cucurbita maxima]	[more]
XP_022997032.1	4.3e-31	95.71	zinc finger CCCH domain-containing protein 6-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Lsi05G009610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19860.1	3.0e-14	56.72	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..109
None	No IPR available	PANTHER	PTHR33400	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED	coord: 4..74
None	No IPR available	PANTHER	PTHR33400:SF2	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6	coord: 4..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009610.1	Lsi05G009610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding