Lsi05G009410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Spindle pole body-associated protein
Location	chr05: 16549814 .. 16552947 (+)
RNA-Seq Expression	Lsi05G009410
Synteny	Lsi05G009410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGCTCCATCTCCATGCCTCCATAGTCAGCACACTACTGGGAAGTTGTTATACAGAAAACCCAATTCTATGGGAGCTGTTTCTCTATTACTTCCAACTTCTCTACGATGCTACCATTTTCCTTCTTCAACACGAACCCTTCTTTCTAATTTCGCTGCTTCCTCACAACTCCTTTCCTTTGCTCACAAATCCACCAAATTCCGCACCAAAACTGTGGTTTTTGGGAACCAATCAGGCAACGAAAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCGATGATATGGATGGATATTTGAATTACCATTCTTTCGAATATGACTCCGTCTGGGATACAAAGCCTTCTTGGTTAGCTTTCCATTTTGGGGCTTTCTTCTTCCACCATTTTTACTCTCGCTTTCTTATCTTATTTTTCAGCAACTATGTAAATGAGGTTTTTAGAAAAAACCCCAATATTGGGATTTTGGAATTAGTGCTAACAAATCAAGGAATCGTGAATTTCTATCATGGGTTCTTCATATATTTGGTTGGTAATGGTTATACAGAGAGAATTCTGTTTTCTCCAATGTAAAATAATGGAGGGTCTGTTTCTTTTGGCTTTTAAGTTTAACATGGTGGGGGTGGGGGTCAAGTACATTTGGACTTCTAGTTGCAGAAGTTGAATGACTAATGATGGATATATTGCTTAACTGGAATGTGTTGTTCTTAGTTGGACATATCACCTATTGTTTACTGTTCCTGTCCTCTAGCATGTGCTGATATAGTTTATGTTTTTGATGTTCATCTATTCACAAGTTTGGTCATGATTGACGTGTTTCTGTAGAGAATCCTCCTCCTATCTAAGAATTTAAAGGCTCTGCTTGCAATTATTCCAATTTCTATAACTACACCCTTCATTGCAGAAGTGCTTTTTCTTCCCTGAATGTTTAGTTTAGCTAGAATAATTCCTAGAGGGTACTTTAATGGAATGAAACAATTAGATAAGCTTTTCGTATTTTATCCTATCTATAGTCCTCAGTTTACACGACTTCCAATGAATCAAAAAGCAATTGAACTGATTGATTTGTGGTTTTAAGAAAGAAAGTAAATGCATCAGTGCTAAACAGGCAACTGGGACTCAATTTCTGAGCAGAAATTTGTAGAGTATAGATCCATATACCTGTTTGTACACATGCTGAGGGACGTCCTCTAATACTTGCCTTTCCCTGTCCCACCTCATTGAATCTGCCAAAATGGAAAAAGGAAAAAGAAAAATGAGAACTCTCTGATGTCCATGAAAACTAGGCTTTGGCAGTCTGGATTGGTTTGGTGAGAAATGGGATACTCTCTCTAAAGTATAGTTAAAGTTTTTAGTTTTGGTATATTATGCTTTTTGTTAGAGTATTGATATAACTAAATTTATCATAGCCCATCAACTTAAGCTTTTCGGTTGATTGGTGATTTACAATGGTATCAAAACAAGAGGTTTTATGTTTAAACCCTTATCGTGTCATTTTCTCCCTAATAATAATTAATGATTAATATTGATTTCTTCTAGTTTGACCTTCACCAAATTTTCAAGCTCACAACTAAGTAGAAGTGCTAGAGTATTGATATAACTAAAGTTACCATAACTCATCAACTTACACTTTTGAGTTGATTAGTGATTTATCAATATTGTTTATACTTTGTTATTTTGATGTTGTTCAATTTATCATTTTGTCACAAGGTGTCAACCCTGGACTATCACACTGACAGGATTACTAGTGATTGCCTCTAGCTGGGTTATTATAAAGTCGATAGCAGTGACTGCAGTAATACTCTCATTAATATGCTTATGGTGGTACATCTTTCTTTACTCATATCCAAAGGTTTGTGCATCAATTCATACAGCCCCTTTGTAAAACCCCTCTTTGGTCAACTTTGATTTTGTTATTTGAATCTAGAATCACCTTTAACAGAATGAGACCCCTGCATATTTTATGAACGCAAGATCACTTGAACAACTTCAAAATGTTATTGGACATTTGACAAAGATTGATATGGGTGGATTTCTGATAGCATTTTTAGTGCCAAAAACGAATAAGAGGAAGAAAGAAGTTGTTTTAAATGAGAAGCTTCTGTTCATTTGCAGGCTTATTCTGACATGATTGCAGAACGAAGAAGAAAGGTTAGTGATGGACTAGAAGACACATTTGGTGTGAAAAGGACACAGTGATTAGTGTAGAGAGTATGTGTATTAACCACCTGCTTCTCTTCTGCTTCTGTGTATGTTTTTTTTTTTTGTAACTCTTTGATTTAAAGGAGAAGAAATAAAGAAAAAAAACAGGATTAGTTCTCATAATTGTGGTGATTTGTGCTATCTCTATGTTCAGGTCAAGTATCCTGTTTCTTCTTTTCCAGGCTTTTGATGACCTCTCCATGCTGCCTGCTCTGTGATATTACTAAAAGATTATAAAGCAGTCGATATGAAGAACATGTAGCGGGGACACCAAGGCAATGCATATTTTTTTTTTTTTTGTAACTCTTTGCTTTAAAGGAGAAGAAATAAAGAAAAAAAACAGGATTAGTTCTCATAATTGTGGTGATTTGTGCTATCTCTATGTTCAGGTCAAGTATCCTGTTTCTTCTTTTCCAGGCTTTTGATGACCTCTCCATGCTGCCTGCTCTGTGATATTACTAAAAGATTATAAAGCAGTCGATATGAAGAACATGTAGCGGGGACACCAAGGCAATGCATATTTTTTTTTTTTTTGTAACTCTTTGCTTTAAAGGAGAAGAAATAAAGAAAAAAAACAGGATTAGTTCTCATAATTGTGGTGATTTGTGCTATCTCTATGTTCAGGTCAAGTATCCTGTTTCTTCTTTTCCAGGCTTTTGATGACCTCTCCATGCTGCCTGCTCTGTGATATTTACTAAAAGATTATAAAGCAGTTGATATGAAGAACATGTAGCTGGGACACCAAGGCAATGCATATTTTTTTTTTTTTTTTGTAAAAGATCATGTTTATTTATACATTGGGTTCGATTCATTTGGGTTCTGATGTTTTTTGTACTCTACATTTTCATTTTCATAACGTTTGATTCGGCTCCTTGTACTAAAAACAAATCATTTTGATCAATATTTGCAAAAATTTTAATATAATTTTTTTT

mRNA sequence

TCAGCTCCATCTCCATGCCTCCATAGTCAGCACACTACTGGGAAGTTGTTATACAGAAAACCCAATTCTATGGGAGCTGTTTCTCTATTACTTCCAACTTCTCTACGATGCTACCATTTTCCTTCTTCAACACGAACCCTTCTTTCTAATTTCGCTGCTTCCTCACAACTCCTTTCCTTTGCTCACAAATCCACCAAATTCCGCACCAAAACTGTGGTTTTTGGGAACCAATCAGGCAACGAAAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCGATGATATGGATGGATATTTGAATTACCATTCTTTCGAATATGACTCCGTCTGGGATACAAAGCCTTCTTGGTTAGCTTTCCATTTTGGGGCTTTCTTCTTCCACCATTTTTACTCTCGCTTTCTTATCTTATTTTTCAGCAACTATGTAAATGAGGCTTATTCTGACATGATTGCAGAACGAAGAAGAAAGGTTAGTGATGGACTAGAAGACACATTTGGTGTGAAAAGGACACAGTGATTAGTGTAGAGAGTATGTGTATTAACCACCTGCTTCTCTTCTGCTTCTGTGTCAAGTATCCTGTTTCTTCTTTTCCAGGCTTTTGATGACCTCTCCATGCTGCCTGCTCTGTGATATTTACTAAAAGATTATAAAGCAGTTGATATGAAGAACATGTAGCTGGGACACCAAGGCAATGCATATTTTTTTTTTTTTTTTGTAAAAGATCATGTTTATTTATACATTGGGTTCGATTCATTTGGGTTCTGATGTTTTTTGTACTCTACATTTTCATTTTCATAACGTTTGATTCGGCTCCTTGTACTAAAAACAAATCATTTTGATCAATATTTGCAAAAATTTTAATATAATTTTTTTT

Coding sequence (CDS)

TCAGCTCCATCTCCATGCCTCCATAGTCAGCACACTACTGGGAAGTTGTTATACAGAAAACCCAATTCTATGGGAGCTGTTTCTCTATTACTTCCAACTTCTCTACGATGCTACCATTTTCCTTCTTCAACACGAACCCTTCTTTCTAATTTCGCTGCTTCCTCACAACTCCTTTCCTTTGCTCACAAATCCACCAAATTCCGCACCAAAACTGTGGTTTTTGGGAACCAATCAGGCAACGAAAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCGATGATATGGATGGATATTTGAATTACCATTCTTTCGAATATGACTCCGTCTGGGATACAAAGCCTTCTTGGTTAGCTTTCCATTTTGGGGCTTTCTTCTTCCACCATTTTTACTCTCGCTTTCTTATCTTATTTTTCAGCAACTATGTAAATGAGGCTTATTCTGACATGATTGCAGAACGAAGAAGAAAGGTTAGTGATGGACTAGAAGACACATTTGGTGTGAAAAGGACACAGTGA

Protein sequence

SAPSPCLHSQHTTGKLLYRKPNSMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWLAFHFGAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

Homology

[Close]

BLAST of Lsi05G009410 vs. ExPASy TrEMBL
Match: A0A1S3BLE6 (uncharacterized protein LOC103491324 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491324 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.4e-44
Identity = 112/168 (66.67%), Postives = 121/168 (72.02%), Query Frame = 0


Query: 24  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 83
           MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1   MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 84  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW-------------LAFHFGAFFFHHF 143
           SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW             +A  + A      
Sbjct: 61  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWCQPWTITLTGLLVIASSWVAIKSVAV 120

Query: 144 YSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
            +  L L       F     +AYS+MIAERRRKVSDGLEDTFGVKRTQ
Sbjct: 121 TAVILTLICLWWYIFLYSYPKAYSEMIAERRRKVSDGLEDTFGVKRTQ 168

[Close]

BLAST of Lsi05G009410 vs. ExPASy TrEMBL
Match: A0A0A0KED9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410630 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 108/168 (64.29%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 24  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 83
           MGAVS  L +SLR Y FPSST+TLLSNFAASSQLLSF    TKFR+KT+VFG QSGN+ND
Sbjct: 1   MGAVSPFLASSLRPYRFPSSTQTLLSNFAASSQLLSFTPNCTKFRSKTLVFGKQSGNDND 60

Query: 84  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW-------------LAFHFGAFFFHHF 143
           SQFLDENGVV+DMDGYLNYHSFEYDSVWDTKP+W             +A  + A      
Sbjct: 61  SQFLDENGVVNDMDGYLNYHSFEYDSVWDTKPAWCQPWTITLTGLLVIASSWVAIKSIAV 120

Query: 144 YSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
            +  L L       F     +AYS+MIAERRRKVSDGLEDTFGVKRTQ
Sbjct: 121 TAVILTLICLWWYIFLYSYPKAYSEMIAERRRKVSDGLEDTFGVKRTQ 168

[Close]

BLAST of Lsi05G009410 vs. ExPASy TrEMBL
Match: A0A6J1HWP2 (uncharacterized protein LOC111466970 OS=Cucurbita maxima OX=3661 GN=LOC111466970 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 9.2e-42
Identity = 105/174 (60.34%), Postives = 119/174 (68.39%), Query Frame = 0


Query: 18  YRKPNSMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQ 77
           + KP SMG VSL L TSLR +HFP ST+TLLSNFAASSQ++SF  K T+FR K+VVFG Q
Sbjct: 46  HTKPKSMGTVSLFLATSLRSHHFP-STQTLLSNFAASSQVVSFTPKCTRFRRKSVVFGKQ 105

Query: 78  SGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW-----------LAFHFGAFF 137
           S NE++SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW           L        
Sbjct: 106 SSNEDESQFLDENGAVNDMDGYLNYHSFEYDSVWDTKPSWCQPWTITLTGSLVIASSWLL 165

Query: 138 FHHFYSRFLIL--------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
                   ++L         F     +AYSDMIAERRRKVSDG+EDTFGVKRTQ
Sbjct: 166 IKSIAVTAVVLALICTWWYIFLYSYPKAYSDMIAERRRKVSDGVEDTFGVKRTQ 218

[Close]

BLAST of Lsi05G009410 vs. ExPASy TrEMBL
Match: A0A6J1HI50 (uncharacterized protein LOC111463803 OS=Cucurbita moschata OX=3662 GN=LOC111463803 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 102/170 (60.00%), Postives = 116/170 (68.24%), Query Frame = 0


Query: 24  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 83
           MG VSL L TSLR +HFP ST+TLLSNFAASSQ +SF  K T+FR K+VVFG QS NE++
Sbjct: 1   MGTVSLFLATSLRSHHFP-STQTLLSNFAASSQAVSFTPKCTRFRRKSVVFGKQSSNEDE 60

Query: 84  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL---------------------AFHF 143
           SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW                      +   
Sbjct: 61  SQFLDENGAVNDMDGYLNYHSFEYDSVWDTKPSWCQPWTVTLTGSLVIASSWLLIKSIAV 120

Query: 144 GAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
            A       S + I  +S    +AY+DMIAERRRKVSDG+EDTFGVKRTQ
Sbjct: 121 TAVVLALICSWWYIFLYS--YPKAYTDMIAERRRKVSDGVEDTFGVKRTQ 167

[Close]

BLAST of Lsi05G009410 vs. ExPASy TrEMBL
Match: A0A1S4DXK9 (uncharacterized protein LOC103491324 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491324 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 24  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 83
           MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1   MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 84  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 118
           SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
Sbjct: 61  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 94

[Close]

BLAST of Lsi05G009410 vs. NCBI nr
Match: XP_008449434.1 (PREDICTED: uncharacterized protein LOC103491324 isoform X1 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 7.0e-44
Identity = 112/168 (66.67%), Postives = 121/168 (72.02%), Query Frame = 0


Query: 24  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 83
           MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +ND
Sbjct: 1   MGALSLLLATSLPSYHFPSSTQTLLSNFAASSQLLSFTPKCTKFRTKTLVFGKQSRIDND 60

Query: 84  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW-------------LAFHFGAFFFHHF 143
           SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW             +A  + A      
Sbjct: 61  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWCQPWTITLTGLLVIASSWVAIKSVAV 120

Query: 144 YSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
            +  L L       F     +AYS+MIAERRRKVSDGLEDTFGVKRTQ
Sbjct: 121 TAVILTLICLWWYIFLYSYPKAYSEMIAERRRKVSDGLEDTFGVKRTQ 168

[Close]

BLAST of Lsi05G009410 vs. NCBI nr
Match: XP_038887717.1 (uncharacterized protein LOC120077773 [Benincasa hispida])

HSP 1 Score: 188.0 bits (476), Expect = 7.0e-44
Identity = 109/169 (64.50%), Postives = 119/169 (70.41%), Query Frame = 0


Query: 25  GAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDS 84
           GA+SL LPTSLR +H PSST+TLLSNF ASSQLLSF   STKFRTKTVVF NQSG ENDS
Sbjct: 3   GAISLFLPTSLRSFHCPSSTQTLLSNFPASSQLLSFTPNSTKFRTKTVVFRNQSGKENDS 62

Query: 85  QFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL---------------------AFHFG 144
           QFLDENGVV+DMDGYLNYHSFEYDSVWDTKPSW                      +    
Sbjct: 63  QFLDENGVVNDMDGYLNYHSFEYDSVWDTKPSWCQPWTITLTGLLVTSSSWVIIKSAAVT 122

Query: 145 AFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
           A  F      + I  +S    +AYS+MIAERRRKVSDG+EDTFGVKRTQ
Sbjct: 123 AVIFSLICLWWYIFLYS--YPKAYSEMIAERRRKVSDGVEDTFGVKRTQ 169

[Close]

BLAST of Lsi05G009410 vs. NCBI nr
Match: XP_004140096.1 (uncharacterized protein LOC101202761 [Cucumis sativus] >KGN47908.1 hypothetical protein Csa_002752 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 3.8e-42
Identity = 108/168 (64.29%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 24  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 83
           MGAVS  L +SLR Y FPSST+TLLSNFAASSQLLSF    TKFR+KT+VFG QSGN+ND
Sbjct: 1   MGAVSPFLASSLRPYRFPSSTQTLLSNFAASSQLLSFTPNCTKFRSKTLVFGKQSGNDND 60

Query: 84  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW-------------LAFHFGAFFFHHF 143
           SQFLDENGVV+DMDGYLNYHSFEYDSVWDTKP+W             +A  + A      
Sbjct: 61  SQFLDENGVVNDMDGYLNYHSFEYDSVWDTKPAWCQPWTITLTGLLVIASSWVAIKSIAV 120

Query: 144 YSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
            +  L L       F     +AYS+MIAERRRKVSDGLEDTFGVKRTQ
Sbjct: 121 TAVILTLICLWWYIFLYSYPKAYSEMIAERRRKVSDGLEDTFGVKRTQ 168

[Close]

BLAST of Lsi05G009410 vs. NCBI nr
Match: XP_022967429.1 (uncharacterized protein LOC111466970 [Cucurbita maxima])

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-41
Identity = 105/174 (60.34%), Postives = 119/174 (68.39%), Query Frame = 0


Query: 18  YRKPNSMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQ 77
           + KP SMG VSL L TSLR +HFP ST+TLLSNFAASSQ++SF  K T+FR K+VVFG Q
Sbjct: 46  HTKPKSMGTVSLFLATSLRSHHFP-STQTLLSNFAASSQVVSFTPKCTRFRRKSVVFGKQ 105

Query: 78  SGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW-----------LAFHFGAFF 137
           S NE++SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW           L        
Sbjct: 106 SSNEDESQFLDENGAVNDMDGYLNYHSFEYDSVWDTKPSWCQPWTITLTGSLVIASSWLL 165

Query: 138 FHHFYSRFLIL--------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
                   ++L         F     +AYSDMIAERRRKVSDG+EDTFGVKRTQ
Sbjct: 166 IKSIAVTAVVLALICTWWYIFLYSYPKAYSDMIAERRRKVSDGVEDTFGVKRTQ 218

[Close]

BLAST of Lsi05G009410 vs. NCBI nr
Match: XP_023553740.1 (uncharacterized protein LOC111811218 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-39
Identity = 102/170 (60.00%), Postives = 117/170 (68.82%), Query Frame = 0


Query: 24  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEND 83
           MG VSL L TSLR +HFP ST+TLLSNFAASSQ++SF  K T+FR K+VVFG QS NE++
Sbjct: 1   MGTVSLFLATSLRSHHFP-STQTLLSNFAASSQVVSFTPKCTRFRRKSVVFGKQSSNEDE 60

Query: 84  SQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL---------------------AFHF 143
           SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW                      +   
Sbjct: 61  SQFLDENGAVNDMDGYLNYHSFEYDSVWDTKPSWCQPWTITLTGLLVIASSWLLIKSIAV 120

Query: 144 GAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ 173
            A       S + I  +S    +AY+DMIAERRRKVSDG+EDTFGVKRTQ
Sbjct: 121 TAVVLTLICSWWYIFLYS--YPKAYTDMIAERRRKVSDGVEDTFGVKRTQ 167

[Close]

BLAST of Lsi05G009410 vs. TAIR 10
Match: AT4G02725.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 63/165 (38.18%), Postives = 84/165 (50.91%), Query Frame = 0


Query: 23  SMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEN 82
           SM AVSL          F   T  LLS  +  + L SF  K  +  TK   FG       
Sbjct: 5   SMSAVSL--------SPFRPQTENLLSKLSFRTNLHSFNLKPIRISTKVRSFGGNRREPK 64

Query: 83  DSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW----------LAFHFGAFFFHH--- 142
           DS+F+DE GVVDDM+G+L+  S EYDSVWDTKPSW          L+    ++   H   
Sbjct: 65  DSRFVDEKGVVDDMEGFLDNLSLEYDSVWDTKPSWCQPWTIMLTGLSIVACSWVILHSVI 124

Query: 143 -------FYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFG 168
                      +  +F  +Y  ++YS+MIAERR++V+DG ED +G
Sbjct: 125 VSSLAVGVIGAWWYIFLYSY-PKSYSEMIAERRKRVADGFEDIYG 160

[Close]

BLAST of Lsi05G009410 vs. TAIR 10
Match: AT4G02725.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 107 Blast hits to 107 proteins in 55 species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 6.2e-14
Identity = 45/95 (47.37%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 23  SMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNEN 82
           SM AVSL          F   T  LLS  +  + L SF  K  +  TK   FG       
Sbjct: 5   SMSAVSL--------SPFRPQTENLLSKLSFRTNLHSFNLKPIRISTKVRSFGGNRREPK 64

Query: 83  DSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW 118
           DS+F+DE GVVDDM+G+L+  S EYDSVWDTKPSW
Sbjct: 65  DSRFVDEKGVVDDMEGFLDNLSLEYDSVWDTKPSW 91

The following BLAST results are available for this feature:

BLAST of Lsi05G009410 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G009410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLE6	3.4e-44	66.67	uncharacterized protein LOC103491324 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KED9	1.9e-42	64.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410630 PE=4 SV=1	[more]
A0A6J1HWP2	9.2e-42	60.34	uncharacterized protein LOC111466970 OS=Cucurbita maxima OX=3661 GN=LOC111466970...	[more]
A0A6J1HI50	1.9e-39	60.00	uncharacterized protein LOC111463803 OS=Cucurbita moschata OX=3662 GN=LOC1114638...	[more]
A0A1S4DXK9	3.4e-36	86.17	uncharacterized protein LOC103491324 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lsi05G009410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449434.1	7.0e-44	66.67	PREDICTED: uncharacterized protein LOC103491324 isoform X1 [Cucumis melo]	[more]
XP_038887717.1	7.0e-44	64.50	uncharacterized protein LOC120077773 [Benincasa hispida]	[more]
XP_004140096.1	3.8e-42	64.29	uncharacterized protein LOC101202761 [Cucumis sativus] >KGN47908.1 hypothetical ...	[more]
XP_022967429.1	1.9e-41	60.34	uncharacterized protein LOC111466970 [Cucurbita maxima]	[more]
XP_023553740.1	2.3e-39	60.00	uncharacterized protein LOC111811218 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi05G009410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02725.1	1.3e-16	38.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02725.2	6.2e-14	47.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36046	PROTEIN, PUTATIVE-RELATED	coord: 24..118 coord: 139..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009410.1	Lsi05G009410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane