Lsi05G009340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G009340
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionchloroplast stem-loop binding protein of 41 kDa a, chloroplastic
Locationchr05: 16488151 .. 16491493 (+)
RNA-Seq ExpressionLsi05G009340
SyntenyLsi05G009340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGTGGTAGACTATAATTTTAAAATGAAAAGATATTCTTGTATTATAATTTATTTATTTTTTAATATAATAAAGGTAGAAGATTCAAACCACATGCCGACTTCTTTATAAGTATAAATTTCTTGCTAGTTATCAGTATTGTTTTTTTTACCATTAAAAGAAGATAGATTTTTTTTATTAATTTTGATCTTGTACTTGTCTGGTCGTATCAATTTGGACTTCAATTTTGGCCTTAAACTTATCTAAGTGTTGCAATTTTTACCTATTTTCACTAATTCACCTACTAATTTTAATGAGAAAAAAAAAAACAACAATGTAAAGATCTTCATAAACTCATTAATTTCAATAAAATAAAGTTTTGCACAAAAATAAGTTTGACCGATACACAAATTAACCATTAAATAACATTTTCAAAATTCGTAAGTTACAATTTAAAAATTAGCTCTAATGTTGCTTCTCTAAAAAAAATTATAAATGTTATCAATTTCACATGTTTTATTATTCATTAAGCATATAAACAACAAACATTTTTAACATTACTTGGAGCGAAAACTTATTAGAGAGCTAAATTGCAACACTTAATAAGACTAGAGTCAAAATTGATGAAATAGAAGTTTAGAATCTAAATCGATACAGTTCGGTTAAAATTGATATTTTCTCTAGATTTTTTCTATTTTGAGAACAATTAAGGTAGTGTATGAGAATTTGAACTTTCGACCTCGAGAGACATACTAACCAACGTTAACGCTCATGTGGGCTATTTTTCATTTTTTTTCCAAAAAACACAAATAACTAATATCAAATTTATAATTTAGAAATGATATTTTCCTTTTTCCTTTTTTTAACGAAATGCTCAACTGTCAAAATTTCAAACCTAAATTTTAACAAGATTTGATGAATAAAAAATATAGGAGCTACATTTACATTTGCAAAGTGTGTATATTGGGCATTGCAAAATGATTGGCCGTTATCATATATCAATCTATCTGGTAAACTAAGAGCTGGTTCTCATCTCACAGTCCAGCTCAAAAATTCTTTGATTCCATGGCTGCTCTTGCTTCCTCATCTTCCCTTTTCTCTTCTAAGCCCTCCATCCATCTTCCATCTTCCCTTTCTCCTTCTTTTCCTCCTCTCTCACTCTCTCCAATCTCTTACCCTTCTGCTCTCTCATCTTCTTTCTCCATTTCCCATTCTTTTCTCTCTTACCCTTCCTCTTCTAGACCCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTCCTGACAAGAAGAAAGTCTTGATTGTCAACACAAACAGCGGTGGACATGCAGTCATTGGCTTCTATTTTGCAAAACAGCTTCTGGGCTCTGGCCATGAGGTCACAGTTCTGACTGTCGGTGAAGAGAGTTCTGATAAGATGAAGAAACCCCCATTCAACAGATTCTCAGTTAGTGATTAAAAAGATTTTCTTTCTGAAGAATTTTTGTTCTGATATGTTCTCACAATCACAGTTCAGGGAACTCAAAAATGAGTGGTGGTTAACTATCTGTAATCTGTGTGTTTTCTTTTGGGATGTTGTTTAGGAAATTGTGAGTGGTGGAGGCAAGACAGTATGGGGAGATCCAGCAGAAATTGGGAAGGTTGTGGCAGGAGCATCATTTGATGTGGTATTAGATAATAATGGCAAAGACATTGATACTGTGAGGTTTGTGGACTTCATCATTTGCAGCTAAATCTGAGTTTCTACTACTTTTTCTCATGCTTTCTGGTGGATTGTTTGATACTTTTACATTTAAAAATTTTATAGGTTTCTTGTTTTGTTAATATCAATCCACCTTTTAAGCATGATAATAAACATAAATAAAATCTCTCTGTTTATGGGGGATGAAAATCATGAAGATTACTCTTTTTTACAGAGATTTCTGTAAGGTAAGAAGAGTTAAACCTTAAATCAACTAGAATCATGCTAAAATTCTATCTAAGCTGGCATTTGGCCTATATTTTGACACAGGCCTGTTATTGATTGGGCAAAGAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGTAAACATTACAGTTTCAATATGATCCTATCAGCATATATAACATATAGTGATATAGATATATATTTAGATACATTTTCTCAGCCAAGAAGGCAGATACTTACAGAATGCTAATAATTCTGCACCATTACTTTAACAGGATCCTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAAAAATATATTGCAGAGGTTTTCGGCAGCTGGGCTATCTTCCGTCCACAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGTAAGAGCACACATGTTCATAAACCTGTAAAGTATTTAGACATTTCTAACTTTGACTGATGAGCTCATGGACTTGATAAATCCCCAATGCAGGAATCGTCCGGGATAGACCGATTCCAATTCCAGGCTCCGGTATGCAGCTGACAAACATTGCACATGTCAGGGACTTGTCTTCTATGTTGACATTGGCTATAGAGAAACCAGATGAAGCACACTCTAACATATTCAACTGTGTGAGCGACCGCGCCGTGACTCTTGATGGAATGGCCAAGCTTTGTGCTCAAGCAGCAGGCCGTCCAGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGGTTGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGGTAAGTAAAATGAAATATTTTCTTTGGTGCTTTGGGGGTAAACATAGAAGATTCAGAATTTTGAGATAAGTGAATATAAAAGCTTACTAAAAAAAAGGTTTGATATCAACTCTAAGACATTCGTACCTATTGTTTTCTGCAGCATTTCTATGCAGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAGCTACCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAGCCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGACCATTCTTCCAATAATTGTGCTAAACGATGCTGTCCATCTTACACTACTTTTGTATATGACTATATGTATTCTCATTTATTGTACGTTTATCAACTTACCCAAATAAAGTGATGAAGAGGTGAAGTTCTGTTGCCCCATTTCTGATTTTTGCATTTACAGAAGAAACCAAATAAAGTAGCATCCCTTGCACATTCCCAGGCTCTCCTTCACTCGGCCAAACAAATGTGGAAGATGTACCAGTTCTGATTTGTTTCTAGTAAAATATATCCATC

mRNA sequence

ATGGTCGTGAGCTGGTTCTCATCTCACAGTCCAGCTCAAAAATTCTTTGATTCCATGGCTGCTCTTGCTTCCTCATCTTCCCTTTTCTCTTCTAAGCCCTCCATCCATCTTCCATCTTCCCTTTCTCCTTCTTTTCCTCCTCTCTCACTCTCTCCAATCTCTTACCCTTCTGCTCTCTCATCTTCTTTCTCCATTTCCCATTCTTTTCTCTCTTACCCTTCCTCTTCTAGACCCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTCCTGACAAGAAGAAAGTCTTGATTGTCAACACAAACAGCGGTGGACATGCAGTCATTGGCTTCTATTTTGCAAAACAGCTTCTGGGCTCTGGCCATGAGGTCACAGTTCTGACTGTCGGTGAAGAGAGTTCTGATAAGATGAAGAAACCCCCATTCAACAGATTCTCAGAAATTGTGAGTGGTGGAGGCAAGACAGTATGGGGAGATCCAGCAGAAATTGGGAAGGTTGTGGCAGGAGCATCATTTGATGTGGTATTAGATAATAATGGCAAAGACATTGATACTGTGAGGTTTCTTGTTTTGTTAATATCAATCCACCTTTTAAGCATGATAATAAACATAAATAAAATCTCTCTGTTTATGGGGGATGAAAATCATGAAGATTACTCTTTTTTACAGAGATTTCTGCCTGTTATTGATTGGGCAAAGAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGATCCTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAAAAATATATTGCAGAGGTTTTCGGCAGCTGGGCTATCTTCCGTCCACAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGAATCGTCCGGGATAGACCGATTCCAATTCCAGGCTCCGGTATGCAGCTGACAAACATTGCACATGTCAGGGACTTGTCTTCTATGTTGACATTGGCTATAGAGAAACCAGATGAAGCACACTCTAACATATTCAACTGTGTGAGCGACCGCGCCGTGACTCTTGATGGAATGGCCAAGCTTTGTGCTCAAGCAGCAGGCCGTCCAGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGGTTGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCAGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAGCTACCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAGCCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGACCATTCTTCCAATAATTGTGCTAAACGATGCTGTCCATCTTACACTACTTTTGTATATGACTATATGTATTCTCATTTATTGTACGTTTATCAACTTACCCAAATAAAGTGATGAAGAGGTGAAGTTCTGTTGCCCCATTTCTGATTTTTGCATTTACAGAAGAAACCAAATAAAGTAGCATCCCTTGCACATTCCCAGGCTCTCCTTCACTCGGCCAAACAAATGTGGAAGATGTACCAGTTCTGATTTGTTTCTAGTAAAATATATCCATC

Coding sequence (CDS)

ATGGTCGTGAGCTGGTTCTCATCTCACAGTCCAGCTCAAAAATTCTTTGATTCCATGGCTGCTCTTGCTTCCTCATCTTCCCTTTTCTCTTCTAAGCCCTCCATCCATCTTCCATCTTCCCTTTCTCCTTCTTTTCCTCCTCTCTCACTCTCTCCAATCTCTTACCCTTCTGCTCTCTCATCTTCTTTCTCCATTTCCCATTCTTTTCTCTCTTACCCTTCCTCTTCTAGACCCTCCAATGTCTGCTCCTTCAGTGTCAGGGCTAGCTCTCCTGACAAGAAGAAAGTCTTGATTGTCAACACAAACAGCGGTGGACATGCAGTCATTGGCTTCTATTTTGCAAAACAGCTTCTGGGCTCTGGCCATGAGGTCACAGTTCTGACTGTCGGTGAAGAGAGTTCTGATAAGATGAAGAAACCCCCATTCAACAGATTCTCAGAAATTGTGAGTGGTGGAGGCAAGACAGTATGGGGAGATCCAGCAGAAATTGGGAAGGTTGTGGCAGGAGCATCATTTGATGTGGTATTAGATAATAATGGCAAAGACATTGATACTGTGAGGTTTCTTGTTTTGTTAATATCAATCCACCTTTTAAGCATGATAATAAACATAAATAAAATCTCTCTGTTTATGGGGGATGAAAATCATGAAGATTACTCTTTTTTACAGAGATTTCTGCCTGTTATTGATTGGGCAAAGAGCTCTGGTGTGAAGCAGTTTCTATTTATCAGCAGTGCTGGAATTTATAAGCCAACTGATGAGCCTCCCCATGTTGAAGGGGATCCTGTTAAAGCTGATGCTGGTCATGTTGGTGTTGAAAAATATATTGCAGAGGTTTTCGGCAGCTGGGCTATCTTCCGTCCACAGTACATGATTGGATCTGGCAACAACAAAGATTGTGAAGAGTGGTTCTTTGATCGAATCGTCCGGGATAGACCGATTCCAATTCCAGGCTCCGGTATGCAGCTGACAAACATTGCACATGTCAGGGACTTGTCTTCTATGTTGACATTGGCTATAGAGAAACCAGATGAAGCACACTCTAACATATTCAACTGTGTGAGCGACCGCGCCGTGACTCTTGATGGAATGGCCAAGCTTTGTGCTCAAGCAGCAGGCCGTCCAGTTAACATTGTGCATTATGATCCAAAAGCAGTTGGGGTTGATGCAAAGAAAGCTTTTCCTTTCAGGAATATGCATTTCTATGCAGAGCCAAGAGCAGCCCAGGATATTTTAGGGTGGAAAGCTACCACAAATCTTCCTGAAGATTTGAAGGAGCGATTTGAAGAGTATGTGAAGATTGGTAGAGACAAGAAGCCTATTAAGTTTGAGTTAGATGATAAGATACTTGAGTCCCTAAAAGTTCCAGTAGCTGCTTGA

Protein sequence

MVVSWFSSHSPAQKFFDSMAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSRPSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLISIHLLSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKKPIKFELDDKILESLKVPVAA
Homology
[Close]
BLAST of Lsi05G009340 vs. ExPASy Swiss-Prot
Match: Q9LYA9 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41A PE=1 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 3.8e-164
Identity = 309/445 (69.44%), Postives = 347/445 (77.98%), Query Frame = 0 

Query: 19  MAALASSSSLFSSKPSIHLPSSL-SPSFPPLSL-SPISYPSALSSSFSISHSFLSYP-SS 78
           MAAL+SSS  FSSK +  + + L  PS    SL S  S  S+LSSS S S S L++   +
Sbjct: 1   MAALSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRT 60

Query: 79  SRPSNVCSFSVRASS-PDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESS 138
           SR  +   F+V+ASS  +KK VLIVNTNSGGHAVIGFYFAK+LL +GH VT+LTVG+ESS
Sbjct: 61  SRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESS 120

Query: 139 DKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLIS 198
           +KMKKPPFNRFSEIVSGGGKTVWG+PA +  VV G +FDVVLDNNGKD+DTVR       
Sbjct: 121 EKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVR------- 180

Query: 199 IHLLSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDE 258
                                           PV+DWAKSSGVKQFLFISSAGIYK T++
Sbjct: 181 --------------------------------PVVDWAKSSGVKQFLFISSAGIYKSTEQ 240

Query: 259 PPHVEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPI 318
           PPHVEGD VKADAGHV VEKY+AE FG+WA FRPQYMIGSGNNKDCEEWFFDRIVRDR +
Sbjct: 241 PPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAV 300

Query: 319 PIPGSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGR 378
           PIPGSG+QLTNI+HVRDLSSMLT A+  P+ A  NIFNCVSDRAVTLDGMAKLCA AAG+
Sbjct: 301 PIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAGK 360

Query: 379 PVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKI 438
            V IVHYDPKA+GVDAKKAF FRNMHFYAEPRAA+D+LGW++ TNLPEDLKERFEEYVKI
Sbjct: 361 TVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKI 406

Query: 439 GRDKKPIKFELDDKILESLKVPVAA 460
           GRDKK IKFELDDKILE+LK PVAA
Sbjct: 421 GRDKKEIKFELDDKILEALKTPVAA 406

[Close]
BLAST of Lsi05G009340 vs. ExPASy Swiss-Prot
Match: Q9SA52 (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-43
Identity = 119/371 (32.08%), Postives = 177/371 (47.71%), Query Frame = 0 

Query: 89  SSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKMKKPPFNRFSEI 148
           S+  +KK+LI+    GG   IG + ++ L+  GH+VT+ T G+  S   K+ P     + 
Sbjct: 49  SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGK--SPIAKQLPGESDQDF 108

Query: 149 VSGGGKTVW--GDPAEIGKVVAGAS---FDVVLDNNGKDIDTVRFLVLLISIHLLSMIIN 208
                K +   GD  +   V +  S   FDVV D NG++ + V                 
Sbjct: 109 ADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVE---------------- 168

Query: 209 INKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDPV 268
                                  P+++      ++Q+++ SSAG+Y  +D  PH E D V
Sbjct: 169 -----------------------PILEALPK--LEQYIYCSSAGVYLKSDILPHCEEDAV 228

Query: 269 KADAGHVG---VEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSG 328
              + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RPIP+P SG
Sbjct: 229 DPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSG 288

Query: 329 MQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRP-VNIV 388
           +Q++ + HV+DL++   L +   ++A   IFN   ++ VT DG+AK CA+A G P   IV
Sbjct: 289 IQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV 348

Query: 389 HYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKK 448
           HY+PK      KKAFPFR+ HF+A    A+ +LGWK   +L E L + +      G  +K
Sbjct: 349 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRK 371

Query: 449 PIKFELDDKIL 451
              F  DD IL
Sbjct: 409 EADFTTDDMIL 371

[Close]
BLAST of Lsi05G009340 vs. ExPASy TrEMBL
Match: A0A6J1HUG4 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466971 PE=3 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 1.7e-204
Identity = 372/442 (84.16%), Postives = 387/442 (87.56%), Query Frame = 0 

Query: 19  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 78
           MAALA SSSSLF+SKPSIHLPSSLSP     S+SPIS PSAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSVSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 79  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKM 138
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVT+LTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 139 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLISIHL 198
           KKPPFNRFSEIVS GGKTVWGDPAE+GKVVAGASFDVVLDNNGKDID+VR          
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVR---------- 180

Query: 199 LSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 258
                                        PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH
Sbjct: 181 -----------------------------PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 240

Query: 259 VEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 318
           VEGD VKADAGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP
Sbjct: 241 VEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 300

Query: 319 GSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVN 378
           GSGMQLTNIAHVRDLSSMLTLA+EKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVN
Sbjct: 301 GSGMQLTNIAHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVN 360

Query: 379 IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRD 438
           IVHYDPK VGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRD
Sbjct: 361 IVHYDPKPVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRD 403

Query: 439 KKPIKFELDDKILESLKVPVAA 460
           KK IKFELDDKILESLKVPVAA
Sbjct: 421 KKAIKFELDDKILESLKVPVAA 403

[Close]
BLAST of Lsi05G009340 vs. ExPASy TrEMBL
Match: A0A6J1HIM8 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463943 PE=3 SV=1)

HSP 1 Score: 720.7 bits (1859), Expect = 3.9e-204
Identity = 372/442 (84.16%), Postives = 387/442 (87.56%), Query Frame = 0 

Query: 19  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 78
           MAALA SSSSLF+SKPSIHLPSSLSP     SLSPIS  SAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSSSALTSSFAISHSFLPFPSSSR 60

Query: 79  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKM 138
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVT+LTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 139 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLISIHL 198
           KKPPFNRFSEIVS GGKTVWGDPAE+GKVVAGASFDVVLDNNGKDID+VR          
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVR---------- 180

Query: 199 LSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 258
                                        PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH
Sbjct: 181 -----------------------------PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 240

Query: 259 VEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 318
           VEGD VKADAGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP
Sbjct: 241 VEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 300

Query: 319 GSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVN 378
           GSGMQLTNI+HVRDLSSMLTLA+EKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVN
Sbjct: 301 GSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVN 360

Query: 379 IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRD 438
           IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRD
Sbjct: 361 IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRD 403

Query: 439 KKPIKFELDDKILESLKVPVAA 460
           KK IKFELDDKILESLKVPVAA
Sbjct: 421 KKAIKFELDDKILESLKVPVAA 403

[Close]
BLAST of Lsi05G009340 vs. ExPASy TrEMBL
Match: A0A5D3E2H3 (Chloroplast stem-loop binding protein of 41 kDa a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00590 PE=3 SV=1)

HSP 1 Score: 711.8 bits (1836), Expect = 1.8e-201
Identity = 373/446 (83.63%), Postives = 385/446 (86.32%), Query Frame = 0 

Query: 19  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHS-FLS-YPSSS 78
           MAAL  SSSLFSSKPSI+ PS +SPSF PLSLSPIS  S +SSSFSISHS FLS Y SSS
Sbjct: 1   MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSS 60

Query: 79  ---RPSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEES 138
              RPS VCSFSVRASS  KKKVLIVNTNSGGHAVIGFYFAK+LLGSGHEVT+LTVGE+S
Sbjct: 61  SSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQS 120

Query: 139 SDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLI 198
           SDKM KPPFNRFSEIVSGGGKTVWGDPAEIGKV+ GASFDVVLDNNGKDIDTVR      
Sbjct: 121 SDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVLEGASFDVVLDNNGKDIDTVR------ 180

Query: 199 SIHLLSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTD 258
                                            PVIDWAKSSGVKQFLFISSAGIYKPTD
Sbjct: 181 ---------------------------------PVIDWAKSSGVKQFLFISSAGIYKPTD 240

Query: 259 EPPHVEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP 318
           EPPHVEGD VKADAGHVGVEKY+AEVF SWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP
Sbjct: 241 EPPHVEGDLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP 300

Query: 319 IPIPGSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAG 378
           IPIPGSGMQLTNIAHVRDLSSMLTLA+EKPDEAHSNIFNCV+DRAVTLDGMAKLCAQAAG
Sbjct: 301 IPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAG 360

Query: 379 RPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVK 438
           RPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK+TTNLPEDLKERFEEYVK
Sbjct: 361 RPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSTTNLPEDLKERFEEYVK 407

Query: 439 IGRDKKPIKFELDDKILESLKVPVAA 460
           IGRDKK IKFELDDKILESLKVPVAA
Sbjct: 421 IGRDKKAIKFELDDKILESLKVPVAA 407

[Close]
BLAST of Lsi05G009340 vs. ExPASy TrEMBL
Match: A0A1S3BLW3 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491274 PE=3 SV=1)

HSP 1 Score: 711.8 bits (1836), Expect = 1.8e-201
Identity = 373/446 (83.63%), Postives = 385/446 (86.32%), Query Frame = 0 

Query: 19  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHS-FLS-YPSSS 78
           MAAL  SSSLFSSKPSI+ PS +SPSF PLSLSPIS  S +SSSFSISHS FLS Y SSS
Sbjct: 1   MAALPFSSSLFSSKPSIYFPSPISPSFTPLSLSPISNSSPISSSFSISHSNFLSNYSSSS 60

Query: 79  ---RPSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEES 138
              RPS VCSFSVRASS  KKKVLIVNTNSGGHAVIGFYFAK+LLGSGHEVT+LTVGE+S
Sbjct: 61  SSFRPSTVCSFSVRASSSTKKKVLIVNTNSGGHAVIGFYFAKELLGSGHEVTILTVGEQS 120

Query: 139 SDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLI 198
           SDKM KPPFNRFSEIVSGGGKTVWGDPAEIGKV+ GASFDVVLDNNGKDIDTVR      
Sbjct: 121 SDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVLEGASFDVVLDNNGKDIDTVR------ 180

Query: 199 SIHLLSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTD 258
                                            PVIDWAKSSGVKQFLFISSAGIYKPTD
Sbjct: 181 ---------------------------------PVIDWAKSSGVKQFLFISSAGIYKPTD 240

Query: 259 EPPHVEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP 318
           EPPHVEGD VKADAGHVGVEKY+AEVF SWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP
Sbjct: 241 EPPHVEGDLVKADAGHVGVEKYMAEVFSSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP 300

Query: 319 IPIPGSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAG 378
           IPIPGSGMQLTNIAHVRDLSSMLTLA+EKPDEAHSNIFNCV+DRAVTLDGMAKLCAQAAG
Sbjct: 301 IPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVTDRAVTLDGMAKLCAQAAG 360

Query: 379 RPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVK 438
           RPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK+TTNLPEDLKERFEEYVK
Sbjct: 361 RPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSTTNLPEDLKERFEEYVK 407

Query: 439 IGRDKKPIKFELDDKILESLKVPVAA 460
           IGRDKK IKFELDDKILESLKVPVAA
Sbjct: 421 IGRDKKAIKFELDDKILESLKVPVAA 407

[Close]
BLAST of Lsi05G009340 vs. ExPASy TrEMBL
Match: A0A0A0KE82 (Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G408170 PE=3 SV=1)

HSP 1 Score: 703.4 bits (1814), Expect = 6.4e-199
Identity = 369/448 (82.37%), Postives = 380/448 (84.82%), Query Frame = 0 

Query: 19  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHS-----FLSYP 78
           MAAL  SSSLFSSKPSI+ PSS+SPSFP  SLSPIS  S +SSSFSISHS     + S+ 
Sbjct: 1   MAALPFSSSLFSSKPSIYFPSSISPSFPHPSLSPISNSSPISSSFSISHSNFLSNYSSFS 60

Query: 79  SSS--RPSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGE 138
           SSS  RPS V SFSVRASS  KKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVT+LTVGE
Sbjct: 61  SSSSFRPSTVFSFSVRASSSPKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGE 120

Query: 139 ESSDKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVL 198
           +SSDKM KPPFNRFSEIVSGGGKTVWGDPAEIGKVV GASFDVVLDNNGKDIDTVR    
Sbjct: 121 QSSDKMNKPPFNRFSEIVSGGGKTVWGDPAEIGKVVEGASFDVVLDNNGKDIDTVR---- 180

Query: 199 LISIHLLSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKP 258
                                              PVIDWAKSSGVKQFLFISSAGIYK 
Sbjct: 181 -----------------------------------PVIDWAKSSGVKQFLFISSAGIYKT 240

Query: 259 TDEPPHVEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRD 318
           TDEPPHVEGDPVKADAGHVGVEKYIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRD
Sbjct: 241 TDEPPHVEGDPVKADAGHVGVEKYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRD 300

Query: 319 RPIPIPGSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQA 378
           RPIPIPGSGMQLTNIAHVRDLSSMLTLA+EKPDEAHSNIFNCVS RAVTLDGMAKLCAQA
Sbjct: 301 RPIPIPGSGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSGRAVTLDGMAKLCAQA 360

Query: 379 AGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEY 438
           AGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGW+ TTNLPEDLKERFEEY
Sbjct: 361 AGRPVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWEGTTNLPEDLKERFEEY 409

Query: 439 VKIGRDKKPIKFELDDKILESLKVPVAA 460
           VKIGRDKK IKFELDDKILESL VPVAA
Sbjct: 421 VKIGRDKKAIKFELDDKILESLNVPVAA 409

[Close]
BLAST of Lsi05G009340 vs. NCBI nr
Match: XP_038888331.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 748.0 bits (1930), Expect = 4.7e-212
Identity = 386/441 (87.53%), Postives = 394/441 (89.34%), Query Frame = 0 

Query: 19  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSRP 78
           MAALASSSSLFSSKPSIHLPSSLSPSFP LSLSPIS+PS LSSS SISHSFLSYP S RP
Sbjct: 1   MAALASSSSLFSSKPSIHLPSSLSPSFPLLSLSPISHPSPLSSSLSISHSFLSYP-SFRP 60

Query: 79  SNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKMK 138
           SNVCSFSVRA+S DKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVT+LTVGEESSDKMK
Sbjct: 61  SNVCSFSVRATSLDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMK 120

Query: 139 KPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLISIHLL 198
           KPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVR           
Sbjct: 121 KPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVR----------- 180

Query: 199 SMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHV 258
                                       PVIDWAKSSGVKQFLFISSAGIYKPTDEPPHV
Sbjct: 181 ----------------------------PVIDWAKSSGVKQFLFISSAGIYKPTDEPPHV 240

Query: 259 EGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPG 318
           EGD VKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVR+RP+PIPG
Sbjct: 241 EGDLVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRNRPVPIPG 300

Query: 319 SGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNI 378
           SGMQLTNIAHVRDLSSMLTLA+EKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPV+I
Sbjct: 301 SGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVDI 360

Query: 379 VHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDK 438
           VH+DPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWK TTNLPEDLKERFEEYVKIGRDK
Sbjct: 361 VHFDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKGTTNLPEDLKERFEEYVKIGRDK 401

Query: 439 KPIKFELDDKILESLKVPVAA 460
           KPIKFELDDKILESLKVPVAA
Sbjct: 421 KPIKFELDDKILESLKVPVAA 401

[Close]
BLAST of Lsi05G009340 vs. NCBI nr
Match: XP_038887630.1 (LOW QUALITY PROTEIN: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 734.6 bits (1895), Expect = 5.4e-208
Identity = 379/441 (85.94%), Postives = 391/441 (88.66%), Query Frame = 0 

Query: 19  MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSRP 78
           MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPIS+PS LSSS SISHSFLSYPSS RP
Sbjct: 1   MAALASSSSLFSSKPSIHLPSSLSPSFPPLSLSPISHPSPLSSSLSISHSFLSYPSSFRP 60

Query: 79  SNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKMK 138
           SNVCSFSVRA+S D KKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVT+LTVGEESSDKMK
Sbjct: 61  SNVCSFSVRANSLD-KKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKMK 120

Query: 139 KPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLISIHLL 198
           KPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVR           
Sbjct: 121 KPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVR----------- 180

Query: 199 SMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHV 258
                                       PVIDWAK  GVKQFLFISSAGIYKPTDEPPHV
Sbjct: 181 ----------------------------PVIDWAKXDGVKQFLFISSAGIYKPTDEPPHV 240

Query: 259 EGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPG 318
           EGDPVK +AGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIV++R +PIPG
Sbjct: 241 EGDPVKVNAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVQNRRVPIPG 300

Query: 319 SGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVNI 378
           SGMQLTNIAHVRDLSSMLTLA+EKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAG  V+I
Sbjct: 301 SGMQLTNIAHVRDLSSMLTLAVEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGCLVDI 360

Query: 379 VHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDK 438
           VH+DPKAVGVDAKKAFPFRNMHF+AEPRAAQDILGWK+TTNLPEDLKERFEEYVKIGRDK
Sbjct: 361 VHFDPKAVGVDAKKAFPFRNMHFHAEPRAAQDILGWKSTTNLPEDLKERFEEYVKIGRDK 401

Query: 439 KPIKFELDDKILESLKVPVAA 460
           KPIKFELDDKILESLKVPVAA
Sbjct: 421 KPIKFELDDKILESLKVPVAA 401

[Close]
BLAST of Lsi05G009340 vs. NCBI nr
Match: XP_022967430.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima])

HSP 1 Score: 721.8 bits (1862), Expect = 3.6e-204
Identity = 372/442 (84.16%), Postives = 387/442 (87.56%), Query Frame = 0 

Query: 19  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 78
           MAALA SSSSLF+SKPSIHLPSSLSP     S+SPIS PSAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSVSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 79  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKM 138
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVT+LTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 139 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLISIHL 198
           KKPPFNRFSEIVS GGKTVWGDPAE+GKVVAGASFDVVLDNNGKDID+VR          
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVR---------- 180

Query: 199 LSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 258
                                        PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH
Sbjct: 181 -----------------------------PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 240

Query: 259 VEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 318
           VEGD VKADAGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP
Sbjct: 241 VEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 300

Query: 319 GSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVN 378
           GSGMQLTNIAHVRDLSSMLTLA+EKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVN
Sbjct: 301 GSGMQLTNIAHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVN 360

Query: 379 IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRD 438
           IVHYDPK VGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRD
Sbjct: 361 IVHYDPKPVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRD 403

Query: 439 KKPIKFELDDKILESLKVPVAA 460
           KK IKFELDDKILESLKVPVAA
Sbjct: 421 KKAIKFELDDKILESLKVPVAA 403

[Close]
BLAST of Lsi05G009340 vs. NCBI nr
Match: XP_022963688.1 (chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata])

HSP 1 Score: 720.7 bits (1859), Expect = 8.0e-204
Identity = 372/442 (84.16%), Postives = 387/442 (87.56%), Query Frame = 0 

Query: 19  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 78
           MAALA SSSSLF+SKPSIHLPSSLSP     SLSPIS  SAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSSSALTSSFAISHSFLPFPSSSR 60

Query: 79  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKM 138
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFAKQLLGSGHEVT+LTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTILTVGEESSDKM 120

Query: 139 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLISIHL 198
           KKPPFNRFSEIVS GGKTVWGDPAE+GKVVAGASFDVVLDNNGKDID+VR          
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVR---------- 180

Query: 199 LSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 258
                                        PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH
Sbjct: 181 -----------------------------PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 240

Query: 259 VEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 318
           VEGD VKADAGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP
Sbjct: 241 VEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 300

Query: 319 GSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVN 378
           GSGMQLTNI+HVRDLSSMLTLA+EKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVN
Sbjct: 301 GSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVN 360

Query: 379 IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRD 438
           IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRD
Sbjct: 361 IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRD 403

Query: 439 KKPIKFELDDKILESLKVPVAA 460
           KK IKFELDDKILESLKVPVAA
Sbjct: 421 KKAIKFELDDKILESLKVPVAA 403

[Close]
BLAST of Lsi05G009340 vs. NCBI nr
Match: KAG6571471.1 (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 720.3 bits (1858), Expect = 1.0e-203
Identity = 371/442 (83.94%), Postives = 387/442 (87.56%), Query Frame = 0 

Query: 19  MAALA-SSSSLFSSKPSIHLPSSLSPSFPPLSLSPISYPSALSSSFSISHSFLSYPSSSR 78
           MAALA SSSSLF+SKPSIHLPSSLSP     SLSPIS PSAL+SSF+ISHSFL +PSSSR
Sbjct: 1   MAALASSSSSLFTSKPSIHLPSSLSPCLLRSSLSPISSPSALTSSFAISHSFLPFPSSSR 60

Query: 79  PSNVCSFSVRASSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKM 138
            SNVCSFSVRASS DKK VLIVNTNSGGHAVIGFYFA+QLLGSGHEVT+LTVGEESSDKM
Sbjct: 61  RSNVCSFSVRASSADKKNVLIVNTNSGGHAVIGFYFAEQLLGSGHEVTILTVGEESSDKM 120

Query: 139 KKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLISIHL 198
           KKPPFNRFSEIVS GGKTVWGDPAE+GKVVAGASFDVVLDNNGKDID+VR          
Sbjct: 121 KKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDSVR---------- 180

Query: 199 LSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 258
                                        PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH
Sbjct: 181 -----------------------------PVIDWAKSSGVKQFLFISSAGIYKPTDEPPH 240

Query: 259 VEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 318
           VEGD VKADAGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP
Sbjct: 241 VEGDTVKADAGHVGVEQYIAEVFSSWAVFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIP 300

Query: 319 GSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRPVN 378
           GSGMQLTNI+HVRDLSSMLTLA+EKPDEAH+NIFNCVSDRAVTLDGMAKLCAQAAGRPVN
Sbjct: 301 GSGMQLTNISHVRDLSSMLTLAVEKPDEAHANIFNCVSDRAVTLDGMAKLCAQAAGRPVN 360

Query: 379 IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRD 438
           IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQ+ILGWK++TNLPEDLKERFEEYVKIGRD
Sbjct: 361 IVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQEILGWKSSTNLPEDLKERFEEYVKIGRD 403

Query: 439 KKPIKFELDDKILESLKVPVAA 460
           KK IKFELDD ILESLKVPVAA
Sbjct: 421 KKAIKFELDDNILESLKVPVAA 403

[Close]
BLAST of Lsi05G009340 vs. TAIR 10
Match: AT3G63140.1 (chloroplast stem-loop binding protein of 41 kDa )

HSP 1 Score: 579.3 bits (1492), Expect = 2.7e-165
Identity = 309/445 (69.44%), Postives = 347/445 (77.98%), Query Frame = 0 

Query: 19  MAALASSSSLFSSKPSIHLPSSL-SPSFPPLSL-SPISYPSALSSSFSISHSFLSYP-SS 78
           MAAL+SSS  FSSK +  + + L  PS    SL S  S  S+LSSS S S S L++   +
Sbjct: 1   MAALSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRT 60

Query: 79  SRPSNVCSFSVRASS-PDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESS 138
           SR  +   F+V+ASS  +KK VLIVNTNSGGHAVIGFYFAK+LL +GH VT+LTVG+ESS
Sbjct: 61  SRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESS 120

Query: 139 DKMKKPPFNRFSEIVSGGGKTVWGDPAEIGKVVAGASFDVVLDNNGKDIDTVRFLVLLIS 198
           +KMKKPPFNRFSEIVSGGGKTVWG+PA +  VV G +FDVVLDNNGKD+DTVR       
Sbjct: 121 EKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVR------- 180

Query: 199 IHLLSMIININKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDE 258
                                           PV+DWAKSSGVKQFLFISSAGIYK T++
Sbjct: 181 --------------------------------PVVDWAKSSGVKQFLFISSAGIYKSTEQ 240

Query: 259 PPHVEGDPVKADAGHVGVEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPI 318
           PPHVEGD VKADAGHV VEKY+AE FG+WA FRPQYMIGSGNNKDCEEWFFDRIVRDR +
Sbjct: 241 PPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAV 300

Query: 319 PIPGSGMQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGR 378
           PIPGSG+QLTNI+HVRDLSSMLT A+  P+ A  NIFNCVSDRAVTLDGMAKLCA AAG+
Sbjct: 301 PIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAGK 360

Query: 379 PVNIVHYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKI 438
            V IVHYDPKA+GVDAKKAF FRNMHFYAEPRAA+D+LGW++ TNLPEDLKERFEEYVKI
Sbjct: 361 TVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKI 406

Query: 439 GRDKKPIKFELDDKILESLKVPVAA 460
           GRDKK IKFELDDKILE+LK PVAA
Sbjct: 421 GRDKKEIKFELDDKILEALKTPVAA 406

[Close]
BLAST of Lsi05G009340 vs. TAIR 10
Match: AT1G09340.1 (chloroplast RNA binding )

HSP 1 Score: 179.1 bits (453), Expect = 8.1e-45
Identity = 119/371 (32.08%), Postives = 177/371 (47.71%), Query Frame = 0 

Query: 89  SSPDKKKVLIVNTNSGGHAVIGFYFAKQLLGSGHEVTVLTVGEESSDKMKKPPFNRFSEI 148
           S+  +KK+LI+    GG   IG + ++ L+  GH+VT+ T G+  S   K+ P     + 
Sbjct: 49  SASSEKKILIM----GGTRFIGLFLSRILVKEGHQVTLFTRGK--SPIAKQLPGESDQDF 108

Query: 149 VSGGGKTVW--GDPAEIGKVVAGAS---FDVVLDNNGKDIDTVRFLVLLISIHLLSMIIN 208
                K +   GD  +   V +  S   FDVV D NG++ + V                 
Sbjct: 109 ADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVE---------------- 168

Query: 209 INKISLFMGDENHEDYSFLQRFLPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDPV 268
                                  P+++      ++Q+++ SSAG+Y  +D  PH E D V
Sbjct: 169 -----------------------PILEALPK--LEQYIYCSSAGVYLKSDILPHCEEDAV 228

Query: 269 KADAGHVG---VEKYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSG 328
              + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RPIP+P SG
Sbjct: 229 DPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSG 288

Query: 329 MQLTNIAHVRDLSSMLTLAIEKPDEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRP-VNIV 388
           +Q++ + HV+DL++   L +   ++A   IFN   ++ VT DG+AK CA+A G P   IV
Sbjct: 289 IQISQLGHVKDLATAF-LNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV 348

Query: 389 HYDPKAVGVDAKKAFPFRNMHFYAEPRAAQDILGWKATTNLPEDLKERFEEYVKIGRDKK 448
           HY+PK      KKAFPFR+ HF+A    A+ +LGWK   +L E L + +      G  +K
Sbjct: 349 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRK 371

Query: 449 PIKFELDDKIL 451
              F  DD IL
Sbjct: 409 EADFTTDDMIL 371

The following BLAST results are available for this feature:
BLAST of Lsi05G009340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LYA93.8e-16469.44Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ... [more]
Q9SA521.1e-4332.08Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ... [more]
BLAST of Lsi05G009340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HUG41.7e-20484.16chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita ma... [more]
A0A6J1HIM83.9e-20484.16chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucurbita mo... [more]
A0A5D3E2H31.8e-20183.63Chloroplast stem-loop binding protein of 41 kDa a OS=Cucumis melo var. makuwa OX... [more]
A0A1S3BLW31.8e-20183.63chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Cucumis melo... [more]
A0A0A0KE826.4e-19982.37Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G408170 P... [more]
BLAST of Lsi05G009340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888331.14.7e-21287.53chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa... [more]
XP_038887630.15.4e-20885.94LOW QUALITY PROTEIN: chloroplast stem-loop binding protein of 41 kDa a, chloropl... [more]
XP_022967430.13.6e-20484.16chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxi... [more]
XP_022963688.18.0e-20484.16chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita mosc... [more]
KAG6571471.11.0e-20383.94Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucur... [more]
BLAST of Lsi05G009340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G63140.12.7e-16569.44chloroplast stem-loop binding protein of 41 kDa [more]
AT1G09340.18.1e-4532.08chloroplast RNA binding [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001509NAD-dependent epimerase/dehydratasePFAMPF01370Epimerasecoord: 225..353
e-value: 2.4E-7
score: 30.5
NoneNo IPR availableGENE3D3.40.50.720coord: 93..433
e-value: 2.7E-31
score: 110.8
NoneNo IPR availablePANTHERPTHR43725:SF6CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTICcoord: 223..457
NoneNo IPR availablePANTHERPTHR43725UDP-GLUCOSE 4-EPIMERASEcoord: 59..190
NoneNo IPR availablePANTHERPTHR43725UDP-GLUCOSE 4-EPIMERASEcoord: 223..457
NoneNo IPR availablePANTHERPTHR43725:SF6CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTICcoord: 59..190
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 91..436

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009340.1Lsi05G009340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0005829 cytosol
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003723 RNA binding