Lsi05G009250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc transporter 5
Location	chr05: 16416304 .. 16416753 (-)
RNA-Seq Expression	Lsi05G009250
Synteny	Lsi05G009250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGTTCAAAATAGCAGCATTATTATTCTTGTGTGTTGTAGCTCTGATCCCCAAGATTGAAGCCCAAGGATGGGCTAACCCACCGCCGCTGTTGCCTCCACGCCCACTTTGTTCTTCACAATTTGCATTAGCAAGCTACGCATGTGCGAGGCTGCCTGTGAGCCCAGACCCCATCCCAATTCCTCCGCCTCCTTCAGAAGGCCACGACCACGACCACGGCCACGGCCACGGTCATCATCATCACCACGGGCGGCGCCACCACCACAGCCAGTCACCGGTGGCCGAGGAATGTTGCCGATGGGCCAGGCAGGTGGATAGTGAGTGCGTGTGTGAGGCGTTAGTTCATTTGGCTAACTTCTTGGTGCGACCATCGCATGCGTTTACCGTGGCCATTACGGACGAATGCGTTGTCACTTACTCATGCAACGGACGAATCAAGATTTGA

mRNA sequence

ATGGGAAGGTTCAAAATAGCAGCATTATTATTCTTGTGTGTTGTAGCTCTGATCCCCAAGATTGAAGCCCAAGGATGGGCTAACCCACCGCCGCTGTTGCCTCCACGCCCACTTTGTTCTTCACAATTTGCATTAGCAAGCTACGCATGTGCGAGGCTGCCTGTGAGCCCAGACCCCATCCCAATTCCTCCGCCTCCTTCAGAAGGCCACGACCACGACCACGGCCACGGCCACGGTCATCATCATCACCACGGGCGGCGCCACCACCACAGCCAGTCACCGGTGGCCGAGGAATGTTGCCGATGGGCCAGGCAGGTGGATAGTGAGTGCGTGTGTGAGGCGTTAGTTCATTTGGCTAACTTCTTGGTGCGACCATCGCATGCGTTTACCGTGGCCATTACGGACGAATGCGTTGTCACTTACTCATGCAACGGACGAATCAAGATTTGA

Coding sequence (CDS)

ATGGGAAGGTTCAAAATAGCAGCATTATTATTCTTGTGTGTTGTAGCTCTGATCCCCAAGATTGAAGCCCAAGGATGGGCTAACCCACCGCCGCTGTTGCCTCCACGCCCACTTTGTTCTTCACAATTTGCATTAGCAAGCTACGCATGTGCGAGGCTGCCTGTGAGCCCAGACCCCATCCCAATTCCTCCGCCTCCTTCAGAAGGCCACGACCACGACCACGGCCACGGCCACGGTCATCATCATCACCACGGGCGGCGCCACCACCACAGCCAGTCACCGGTGGCCGAGGAATGTTGCCGATGGGCCAGGCAGGTGGATAGTGAGTGCGTGTGTGAGGCGTTAGTTCATTTGGCTAACTTCTTGGTGCGACCATCGCATGCGTTTACCGTGGCCATTACGGACGAATGCGTTGTCACTTACTCATGCAACGGACGAATCAAGATTTGA

Protein sequence

MGRFKIAALLFLCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSPDPIPIPPPPSEGHDHDHGHGHGHHHHHGRRHHHSQSPVAEECCRWARQVDSECVCEALVHLANFLVRPSHAFTVAITDECVVTYSCNGRIKI

Homology

[Close]

BLAST of Lsi05G009250 vs. ExPASy TrEMBL
Match: A0A6J1DQT3 (uncharacterized protein LOC111022709 OS=Momordica charantia OX=3673 GN=LOC111022709 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 120/159 (75.47%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 1   MGRFKIAALL-FLCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSPDP 60
           MGRFKIA LL  LCV+ LIP++E Q W+ P PLLPPRPLCSSQFALASYACARLP++P+P
Sbjct: 1   MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEP 60

Query: 61  IPIPPPPS----EGHDHDHGHGHGH-----HHHHGRRHHHSQSPVAEECCRWARQVDSEC 120
           IPI PPPS    +GH H HGHGHGH     H HH RR HH+ SPVAEECCRWAR+VDSEC
Sbjct: 61  IPILPPPSPVDEDGHGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRWAREVDSEC 120

Query: 121 VCEALVHLANFLVRPSHAFTVAITDECVVTYSCNGRIKI 150
           VC+AL+HLANFL+RPSHAFTVAITD+C+VTYSCNGRIKI
Sbjct: 121 VCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI 159

[Close]

BLAST of Lsi05G009250 vs. ExPASy TrEMBL
Match: A0A6J1HVN1 (uncharacterized protein LOC111467082 OS=Cucurbita maxima OX=3661 GN=LOC111467082 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 103/158 (65.19%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 1   MGRFKIA---ALLFLCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSP 60
           MGR + A   A L   +  + PKIEAQ W+      PP+PLCSSQFALASYACARLP++ 
Sbjct: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWS-----YPPKPLCSSQFALASYACARLPLNL 60

Query: 61  DPIPIPPPPS----EGHDHDHGHGHGHH--HHHGRRHHHSQSPVAEECCRWARQVDSECV 120
           +P+PI PPPS    EGH H H HGHGHH  HHHG  HH ++SP+ EECCRWARQVD+ECV
Sbjct: 61  EPLPISPPPSPHVEEGHRHGHEHGHGHHRGHHHG-HHHRNRSPIEEECCRWARQVDNECV 120

Query: 121 CEALVHLANFLVRPSHAFTVAITDECVVTYSCNGRIKI 150
           C+AL HLANF+VRPSH FTVAIT++C+VTYSC GRIKI
Sbjct: 121 CDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 152

[Close]

BLAST of Lsi05G009250 vs. ExPASy TrEMBL
Match: A0A6P4AZX7 (uncharacterized protein DDB_G0272724 OS=Ziziphus jujuba OX=326968 GN=LOC107426015 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.8e-33
Identity = 77/139 (55.40%), Postives = 97/139 (69.78%), Query Frame = 0


Query: 14  VVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSPDPIPIPPPPSE----G 73
           ++ L+PK+E+Q    PP  + PRPLC+SQFALASYAC+ +P +P P   P PPS     G
Sbjct: 6   LLLLVPKLESQ--VLPP--VAPRPLCASQFALASYACSLIPFTPLPPEPPSPPSPPDFLG 65

Query: 74  HDHDHGHG--HGHHHHHGRRHHHSQSPVAEECCRWARQVDSECVCEALVHLANFLVRPSH 133
           H H HGHG  HGH H HG RH H +SP  E CCRW +Q+DS+CVC+ LVHL NFL RP+H
Sbjct: 66  HSHGHGHGHRHGHGHRHGHRHRHRESPAEESCCRWLKQLDSQCVCDVLVHLPNFLSRPAH 125

Query: 134 AFTVAITDECVVTYSCNGR 147
            ++V + D C VT+SC GR
Sbjct: 126 EYSVIVGDACDVTFSCEGR 140

[Close]

BLAST of Lsi05G009250 vs. ExPASy TrEMBL
Match: A0A5E4EE79 (PREDICTED: histidine-rich OS=Prunus dulcis OX=3755 GN=ALMOND_2B027823 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 85/173 (49.13%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 1   MGRFKIAAL-LFLCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSPDP 60
           M R  I  L LF+  +  +PK+EAQ         PPRPLC+SQFALA+YACA LP +P P
Sbjct: 1   MERVNILTLTLFVASLLFVPKMEAQRL-----FPPPRPLCASQFALANYACALLPFTPTP 60

Query: 61  IPIP--PPPS----------EGHDHDHGHGHGHHHHHGRRHHH-----------SQSPVA 120
           +P P  PPPS          + H+H+HGHGHGH H HG RH H           S SP  
Sbjct: 61  LPTPPSPPPSSPPDDDGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAE 120

Query: 121 EECCRWARQVDSECVCEALVHLANFLVRPSHAFTVAITDECVVTYSCNGRIKI 150
           + CCRW  Q+D+ECVCE LVHL  FL++P+HA+TVA+ + C VTY+C   I+I
Sbjct: 121 DNCCRWLTQLDNECVCELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 168

[Close]

BLAST of Lsi05G009250 vs. ExPASy TrEMBL
Match: A0A251N5W9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G243700 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 85/173 (49.13%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 1   MGRFKIAAL-LFLCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSPDP 60
           M R  I  L LF+  +  +PK+EAQ         PPRPLC+SQFALA+YACA LP +P P
Sbjct: 1   MERVNILTLTLFVASLLFVPKMEAQRL-----FPPPRPLCASQFALANYACALLPFTPTP 60

Query: 61  IPIP--PPPS----------EGHDHDHGHGHGHHHHHGRRHHH-----------SQSPVA 120
           +P P  PPPS          + H+H+HGHGHGH H HG RH H           S SP  
Sbjct: 61  LPTPPSPPPSSPPDDDGGQEQEHEHEHGHGHGHGHGHGHRHGHNRHRHGGHHEPSPSPAE 120

Query: 121 EECCRWARQVDSECVCEALVHLANFLVRPSHAFTVAITDECVVTYSCNGRIKI 150
           + CCRW  Q+D+ECVCE LVHL  FL++P+HA+TVA+ + C VTY+C   I+I
Sbjct: 121 DNCCRWLTQLDNECVCELLVHLPTFLLKPTHAYTVAVGEFCRVTYTCGTPIRI 168

[Close]

BLAST of Lsi05G009250 vs. NCBI nr
Match: XP_022155619.1 (uncharacterized protein LOC111022709 [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 2.7e-60
Identity = 120/159 (75.47%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 1   MGRFKIAALL-FLCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSPDP 60
           MGRFKIA LL  LCV+ LIP++E Q W+ P PLLPPRPLCSSQFALASYACARLP++P+P
Sbjct: 1   MGRFKIAHLLAALCVLVLIPQMEGQAWSQPSPLLPPRPLCSSQFALASYACARLPLNPEP 60

Query: 61  IPIPPPPS----EGHDHDHGHGHGH-----HHHHGRRHHHSQSPVAEECCRWARQVDSEC 120
           IPI PPPS    +GH H HGHGHGH     H HH RR HH+ SPVAEECCRWAR+VDSEC
Sbjct: 61  IPILPPPSPVDEDGHGHGHGHGHGHGHGHQHQHHHRRRHHTHSPVAEECCRWAREVDSEC 120

Query: 121 VCEALVHLANFLVRPSHAFTVAITDECVVTYSCNGRIKI 150
           VC+AL+HLANFL+RPSHAFTVAITD+C+VTYSCNGRIKI
Sbjct: 121 VCDALIHLANFLIRPSHAFTVAITDDCIVTYSCNGRIKI 159

[Close]

BLAST of Lsi05G009250 vs. NCBI nr
Match: KAG6571480.1 (hypothetical protein SDJN03_28208, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011243.1 hypothetical protein SDJN02_26146, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-48
Identity = 108/162 (66.67%), Postives = 127/162 (78.40%), Query Frame = 0


Query: 1   MGR----FKIAALLFLCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVS 60
           MGR    + +AALLF+ +  +IP+I+AQ W+      PP+PLCSSQFALASYACARLP++
Sbjct: 1   MGRLEFAYTLAALLFV-LALMIPEIDAQAWS-----YPPKPLCSSQFALASYACARLPLN 60

Query: 61  PDPIPIPPPPS---EGHDHDHG----HGHGHH--HHHGRRHHHSQSPVAEECCRWARQVD 120
           P+P+PI PP S    GHDHDH     HGHGHH  HHHG  HH S+SP+ EECCRWARQVD
Sbjct: 61  PEPLPISPPSSPHGHGHDHDHNHDHDHGHGHHRGHHHG-HHHRSRSPIEEECCRWARQVD 120

Query: 121 SECVCEALVHLANFLVRPSHAFTVAITDECVVTYSCNGRIKI 150
           SECVC+AL HLANF+VRPSH FTVAIT++CVVTYSC GRIKI
Sbjct: 121 SECVCDALAHLANFMVRPSHVFTVAITEDCVVTYSCIGRIKI 155

[Close]

BLAST of Lsi05G009250 vs. NCBI nr
Match: XP_022967638.1 (uncharacterized protein LOC111467082 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 2.6e-47
Identity = 103/158 (65.19%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 1   MGRFKIA---ALLFLCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSP 60
           MGR + A   A L   +  + PKIEAQ W+      PP+PLCSSQFALASYACARLP++ 
Sbjct: 1   MGRLEFAYASAALLFVLALMTPKIEAQAWS-----YPPKPLCSSQFALASYACARLPLNL 60

Query: 61  DPIPIPPPPS----EGHDHDHGHGHGHH--HHHGRRHHHSQSPVAEECCRWARQVDSECV 120
           +P+PI PPPS    EGH H H HGHGHH  HHHG  HH ++SP+ EECCRWARQVD+ECV
Sbjct: 61  EPLPISPPPSPHVEEGHRHGHEHGHGHHRGHHHG-HHHRNRSPIEEECCRWARQVDNECV 120

Query: 121 CEALVHLANFLVRPSHAFTVAITDECVVTYSCNGRIKI 150
           C+AL HLANF+VRPSH FTVAIT++C+VTYSC GRIKI
Sbjct: 121 CDALAHLANFMVRPSHVFTVAITEDCIVTYSCIGRIKI 152

[Close]

BLAST of Lsi05G009250 vs. NCBI nr
Match: KAF3436324.1 (hypothetical protein FNV43_RR23416 [Rhamnella rubrinervis])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-32
Identity = 79/142 (55.63%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 12  LCVVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSPDPIPIPP-PPSE-- 71
           L ++ L+PK E Q +   PP LPPRPLCSSQFALASYAC+++P SP P P PP PPS   
Sbjct: 27  LLLLMLVPKSEGQIF---PPPLPPRPLCSSQFALASYACSQIPFSPLPPPQPPSPPSPPD 86

Query: 72  --GH--DHDHGHGHGHHHHHGRRHHHSQSPVAEECCRWARQVDSECVCEALVHLANFLVR 131
             GH  +H+H H HGH H HG RH H  SP  E CCRW +Q+DS+CVC+ LV L NFL R
Sbjct: 87  NGGHRLEHEHSHRHGHGHGHGHRHRHHDSPAEESCCRWVKQLDSQCVCDLLVRLPNFLSR 146

Query: 132 PSHAFTVAITDECVVTYSCNGR 147
           P+H ++V + D C V++ C GR
Sbjct: 147 PAHEYSVIVGDACNVSFPCGGR 165

[Close]

BLAST of Lsi05G009250 vs. NCBI nr
Match: XP_015891580.1 (uncharacterized protein DDB_G0272724 [Ziziphus jujuba])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-32
Identity = 77/139 (55.40%), Postives = 97/139 (69.78%), Query Frame = 0


Query: 14  VVALIPKIEAQGWANPPPLLPPRPLCSSQFALASYACARLPVSPDPIPIPPPPSE----G 73
           ++ L+PK+E+Q    PP  + PRPLC+SQFALASYAC+ +P +P P   P PPS     G
Sbjct: 6   LLLLVPKLESQ--VLPP--VAPRPLCASQFALASYACSLIPFTPLPPEPPSPPSPPDFLG 65

Query: 74  HDHDHGHG--HGHHHHHGRRHHHSQSPVAEECCRWARQVDSECVCEALVHLANFLVRPSH 133
           H H HGHG  HGH H HG RH H +SP  E CCRW +Q+DS+CVC+ LVHL NFL RP+H
Sbjct: 66  HSHGHGHGHRHGHGHRHGHRHRHRESPAEESCCRWLKQLDSQCVCDVLVHLPNFLSRPAH 125

Query: 134 AFTVAITDECVVTYSCNGR 147
            ++V + D C VT+SC GR
Sbjct: 126 EYSVIVGDACDVTFSCEGR 140

[Close]

BLAST of Lsi05G009250 vs. TAIR 10
Match: AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-19
Identity = 64/221 (28.96%), Postives = 85/221 (38.46%), Query Frame = 0


Query: 34  PPRPLCSSQFALASYACARL---------PVSPDPIPIPPPPSE----GHDHDHGHGHGH 93
           PPRPLC+SQ+ALA+YAC+RL         P++P P PI PPP E     HDHDH H H H
Sbjct: 28  PPRPLCASQYALANYACSRLPMHTVPPPAPITPPPAPIAPPPPEHDHHDHDHDHDHDHDH 87

Query: 94  ------------------------------------------------------------ 148
                                                                       
Sbjct: 88  DDDHDDDDDHDHDDDHDHDHDDDHDHDDDDRDRDRDRDRDRDRDRDHDRAHDDHDHNHDH 147

The following BLAST results are available for this feature:

BLAST of Lsi05G009250 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G009250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQT3	1.3e-60	75.47	uncharacterized protein LOC111022709 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1HVN1	1.3e-47	65.19	uncharacterized protein LOC111467082 OS=Cucurbita maxima OX=3661 GN=LOC111467082...	[more]
A0A6P4AZX7	6.8e-33	55.40	uncharacterized protein DDB_G0272724 OS=Ziziphus jujuba OX=326968 GN=LOC10742601...	[more]
A0A5E4EE79	1.2e-32	49.13	PREDICTED: histidine-rich OS=Prunus dulcis OX=3755 GN=ALMOND_2B027823 PE=4 SV=1	[more]
A0A251N5W9	1.2e-32	49.13	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G243700 PE=4 SV=1	[more]

BLAST of Lsi05G009250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155619.1	2.7e-60	75.47	uncharacterized protein LOC111022709 [Momordica charantia]	[more]
KAG6571480.1	3.1e-48	66.67	hypothetical protein SDJN03_28208, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022967638.1	2.6e-47	65.19	uncharacterized protein LOC111467082 [Cucurbita maxima]	[more]
KAF3436324.1	1.4e-32	55.63	hypothetical protein FNV43_RR23416 [Rhamnella rubrinervis]	[more]
XP_015891580.1	1.4e-32	55.40	uncharacterized protein DDB_G0272724 [Ziziphus jujuba]	[more]

BLAST of Lsi05G009250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63095.1	3.2e-19	28.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 39..143 e-value: 8.2E-4 score: 28.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	PANTHER	PTHR34377:SF6	SUBFAMILY NOT NAMED	coord: 4..147
None	No IPR available	PANTHER	PTHR34377	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 4..147
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 86..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009250.1	Lsi05G009250.1	mRNA