Lsi05G009070 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009070
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein PALE CRESS, chloroplastic
Location	chr05: 16233850 .. 16239588 (-)
RNA-Seq Expression	Lsi05G009070
Synteny	Lsi05G009070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATAGTGTTCTACTCATGGGTAGTATTCATGGTGAATTTTCTTTGAATTTTTCCAATTTCATACCATTTTTCACATAAAGCTCTGACAATTCGATTATTGCAAAAATGGCTTAGAAATTTACTGATACTATAGTTGTTCATCAATTTAAATGCAGAAAATTGAAGAGGCTGCTGAGAAAGGGGAACTAACAGAGCTTGTTCTATTAGTCATATGGAATCGGCTTGATTTAGCACGTCGTGATGTATGTTTTTCTTCAAATTCCTTTTAATTTTAATTTACTTGCTTATTTTGGAGGGAGCCTAGTTCTATGTGCTTACTTATAACTGGCTCTTTCTTCAGGATGAAAAGGATGCAATTAGAAGTCTTGATCTGCTATATCGAAGGGTAGAGGTATGAGCATTTTTTGAACTGTTTTAAACATGCCATGTTTGTTACGATCTTAAAGAACACTCACTCAAGTCCTCCTTAGTCACACTCAGTACATGGAAGTTATGCAATTATAGGTGAAGGAAAATATTCAAAACTTATCCCAAGGATCAATCTTAAATTTATGGTTAAATAATTAAAAATACTCTTGCACTTTTAAAAATACCTTTGAACTTTAAAAAGTCTAAAAAATACCCTGAACTTTCAAAAAGGTTCAAAATGCCTCCACTATTAGTAGACCACACACAAAATTGACGTGGACTGATGAATGTCAACACCAGTGTATTACATGGAAGAAAATGAATACTAGATGGTTTGAGCCTTTGAGGTGTAAAAAATTATGGAAATCTGTGTTTATCAATTTACAGTGTGCTCTCCTCATTTTGTTCTTTCTACAGCACACACAGTCACACATTCAAATCTTCCATTAAGGACCATATCCATTAATTTCAAAAGATAAAGGCCCCTTTTTCCTTTCCGTATGCTTTTCTTTTAATTTTTCTTTCATAGCTTCAACAGTGACTGCTCTAATCTCCGTCAAAATCTAAACACATGCACTTTTCTGACATTTTGAACACCAAAGCCTTCATTTTGACCCTCTACTTTCCAAGGGATCGATTCAACAATAAACTTTTATCTACTCCTATGTGATTTCTTATACCCTCTATCTCTTCAAGATTAAAGATGAAAACTCCATAAAAGCTCACAAAGTTTCAAGATTCTAAGTTTCTTCAAAAATTAACTTACCAAAACAAAAATCTTCACCAAATCTGAATAAAGGCTATTGACCATGATTCATGCTCTCAACTCTTCTCCTTCAATAACCCTCCTTCCTTATTTTCCTTTCTTTCCCACGTTTTCTGTTTTTTTTTTCCCTTCTTCCTCTTGTTTTTTTATTTTTATTTTTTAATTTTTTTTAAAAGGAAACCAGCCTCTTCAATGAAATAATGAAATGAGACTATTGCTCAAAGTACAATAAAGATACACTATGAGTGAAAGTAACCTAAGGATCAGGAAATGCACCCGAGAATTTCAACTAGGTCGACACCCCCTTAGCATCCACATCATATCCATTAAAGATCTAACAAAAACGTTCCAAAAATCATAGAGAACAAAAAGCACAAACAGTCCAAACGGTGTCAATACATCACAATTCACAAATATAAACTTAAGCTGGAAAAATAAAAGTGTGCCAATTTAAACATAAGTCTTCTTTTTCCATTTTTTCTTTTCTTCAAAACTCCTTGGTGGGAGGCCATGAGTCAAAAGCACATCGTAAATCTACTTCGAGTCAGACTTGTTGAGAGCATAAGGATCTACAATTGAAAATTTGAAGTAGAAGAAGGAGAACTAGAGGAGCATGGAGAAAGGTGGAATTGAGAAGCATGGTGTTGAGGCGCAATGACATGAGGCAATTTTGCCTCTTGTTTTAATTGGGTGATTATCTTCAAACGAGTGCTCGCCTGGCGGTGCCTCACGGTGACTTTGCCATTGATGAAAGCGTGCACCTAGCAAAGTATTCTGTCTCTTGTTTTGGAAAAAAAAATATGCATGATATCCAAGAAATTCAGTCGATGAAGCCCATGAAGAAAAAGCCCACATTAAGACTTTCCATGCAGAGAATATTTTATTCGAATTAAACATTCTAAAGTTGGCATCTTCAGCTACTTCAAATCATCTTCTTTGATTTCTTCAACTTCTTGAATGGGTTTGCTTCTTCACAAAGTACGACGTCCTCTTCAAGGCTTTTTTTTGCAAACGAATGACAGTCTTCCTCTTCTAGCTTCCTACTAATTCTTCTTCTTAAAAATATCTATTATATATATATATATATATATATATTCATGAGTATCCGGACCTGCTTACGCGCACCTTGATTGATCTCACGGGACAACCCATGAGGTTGATTTTAAGTTTTAAGTGTAAAAGCATTAAACTAAATTTTAATATTTTCTTGTCGGTTTGGTGGTCACTGATCACAATGATTTTGAGTTTTTTTTCCACTTTTTTGAAAGTTGAAACCGAGTGAGTTCTTTGGTAAGTTTTAAAATAATAAAGTTATATTATAGTATACACACTACTATGTTATATTATATCTTAAGATTTAGTGAGTTGATTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTAGTTTAGTTTATATTCTATCTTATTATTAATTTATAATGTTACGCGAATTGAAATTTATTATATTAATTTTTTTAAAGTTGTTTCTTTCGTGTAGGCTAGTAGCATCTGGGTGATTTTTAAAGTTTAGTTTCTATTCTTTTATGATAGGATGGATGTTGTGAGTTTGCAAGTTCTGTTTGGGAGTTATTTTTTTAGACGTTTGGTATTTCGTGTGCCCGTTAGAGAGACACTGGTGTTATGATCGAGGAGTTTCTCCTCAATCCACCTCGTGGGAGAAGGGTCACTTTTTATAGCTTGTTGGATTGTGTGCTATCTTACGGACTTTGTGGGGTGAGCGGAATAGTAGGATTTTTAGAGGGGTGGATAGGGACCCTAGTGAGATTTGGTCTCTTGTTCATTGTCGTGTTTCTTTGTGGGCTTCGATTTCAAAGACCTTTTGTAAGCTATAGACGTTATTTAAGCTGAGGTCCTTTCTTATAAAGGGGGGTTTCTTTTTTGTGGGCTTAGTTTTTTGTACGTCCGTGTATTCTTTCATTTTTTTCTCAATGAAAATTGTTTCTATATTAAACAAAAAAAGGATGGGAGAAAGGGAACAAAACCTGCAAATATCCCGGTTGGCAATATGTCATATTAGAAAATAAAAAGGATACAAACACTTGCAAATGTATGTTTTGCGGAAAAATTACCAAGGGTGACATTTGTCGAGCAACAAAACACTTAGTGGAAATTGAAATTTAAGCATGCTTAAAGTGTCTAACTAATGTAAGAGATGAAATGAAAGGGTATCAAATAAGGACAAAAGCAAAGAGGGAGGAAAGTAATGTCCTCCCAAACTATGATGCAAATGATTTGAACATTATGGATGGAGAAGAGATGGAGGATGAAATGGAAGTTGGTGGATCAAGTATTAGAACATCTAGAAAACGAGCAAACATGACTGGCAGTGTGAGTTTTGTGGAGAAAGAGAAGGAAGTAGTTCCAGTTTCCAAAGAAGTCCATCTCAATCACAAGCAAAGCTCGAACTAAGGGAGCAATGGATAAATTTGTATATCCAAATTCAGCCAAGGTTGTTGATGATTGGAATAGATTAAAGAACCTGAAGCAATTAAGCATCACTAAAAAATACATCAAAGAAGAAGAAATGTTGCAGTTCGATTTATCATGCGTTGGATTTATCAAGTAGGTATTCCATTAAATACAAATTCGATTAAAATGTTTTCATGTAATGCTGGAAGTTGTGAGACAATTTGGACATGGTCTAATACCTCCTTATCATGAGGCTAGAGTAACAATCTAATGAGTAGCCATGAGGTTGACCGGAAAAGAAATAGTTGTTCTTTGATGTCTAATGGGTGGACCGATAGAAGAGATAGGACCCTGATAAATTTTTTAGTGCATGTTGCTGTTGGAACATTGTTTTTGGAGTCGATTGATGCACCTTCAGGCATCAAGATTGGAGACAAGGTATTGAACTCTTGGATAGAGTGGTTGAAAACACTACTTTTTTTAAGAGAGAGAGAATGGTTGAAAACACTACTCTAAACTTAAATCGCTATATGGGTATGTTAGGTATCTACCCCCTGCACTCAGTAAATCCCAACAAGATGTTTATAGACAAAAGATAGAAGGCACAATTCTCTGCTGAGATATATGTATATATAAGATTCAAGAAGTCTCAATATAGTAAGCAATGTTCCCAGACAATTTGGAAATAAGCAAGAAGTAAGAACACTCAGAATATAGAAATAGAACTAAGGACCAGCACATTAGAGAGAGCTGGTGATCCTCTCCTTTCTCTCCCAAAATTAGGGCCTGCACAAGAATACTCTGCATACCCTCCCTTTCCTCTGCCATTCTTTATTTATCAACATTCCAAGAGGAGGTCCCCCCCTCTCCACACACTTCCAACTGTATTTCCCCCACTACCAACTAATTCCACCTCACTTCTCATTTCCCATTTTGCCCTTCCTCTTATAAGTATAAACGATTGGGGGCCTAACAGGGCACCTCTAACTGCATCTTGCTTGAAATGGCCATTTCTCTAGATGTCTCTATCACCTCTTTCATACTTTATAGAAAACAGAGAGCCTAACTCTAGGATTGAAGAACTCGTTGGACCTTTGTTCCTAGGCTCTTTTTGTAATTTGCTAGGTCTTATTTCTTTTGATTGGAGCCCTTTTCTTGTAGTTCAACTACTTTTATGAGTTTTCCTTTTTGTATACTATGTATTCTTTCGTTTTTTTCACAAAGAAAGTAAAAATTTTCATCCAAAAAAAGAAGGAAAAGACTTTGGATTAGAAGAAAAGCCCACCTTATTCCATCTAATTTCTTCAAAACAGGTCATTCTCCATGCACACCAAATAGGCAACTGCATTCCTTTAAATCAATGATCGATCTTTGGCCCAAAACTTATATTTCTCTCGTTTCCTCTAGACTTTATACCTCAAGAGGGCAGTATTCAGGCCTTGATAATCGCTAA

mRNA sequence

ATGATTATAAAAATTGAAGAGGCTGCTGAGAAAGGGGAACTAACAGAGCTTGTTCTATTAGTCATATGGAATCGGCTTGATTTAGCACGTCGTGATGATGAAAAGGATGCAATTAGAAGTCTTGATCTGCTATATCGAAGGGTAGAGTGTCTAACTAATGTAAGAGATGAAATGAAAGGGTATCAAATAAGGACAAAAGCAAAGAGGGAGGAAAGTAATGTCCTCCCAAACTATGATGCAAATGATTTGAACATTATGGATGGAGAAGAGATGGAGGATGAAATGGAAGTTGGTGGATCAAGTATTAGAACATCTAGAAAACGAGCAAACATGACTGGCAGTGTGAGTTTTGTGGAGAAAGAGAAGGAATTTCCAAAGAAGTCCATCTCAATCACAAGCAAAGCTCGAACTAAGGGAGCAATGGATAAATTTGTATATCCAAATTCAGCCAAGGTTGTTGATGATTGGAATAGATTAAAGAACCTGAAGCAATTAAGCATCACTAAAAAATACATCAAAGAAGAAGAAATGTTGCAGTTCGATTTATCATGCGTTGGATTTATCAAACTTTATACCTCAAGAGGGCAGTATTCAGGCCTTGATAATCGCTAA

Coding sequence (CDS)

ATGATTATAAAAATTGAAGAGGCTGCTGAGAAAGGGGAACTAACAGAGCTTGTTCTATTAGTCATATGGAATCGGCTTGATTTAGCACGTCGTGATGATGAAAAGGATGCAATTAGAAGTCTTGATCTGCTATATCGAAGGGTAGAGTGTCTAACTAATGTAAGAGATGAAATGAAAGGGTATCAAATAAGGACAAAAGCAAAGAGGGAGGAAAGTAATGTCCTCCCAAACTATGATGCAAATGATTTGAACATTATGGATGGAGAAGAGATGGAGGATGAAATGGAAGTTGGTGGATCAAGTATTAGAACATCTAGAAAACGAGCAAACATGACTGGCAGTGTGAGTTTTGTGGAGAAAGAGAAGGAATTTCCAAAGAAGTCCATCTCAATCACAAGCAAAGCTCGAACTAAGGGAGCAATGGATAAATTTGTATATCCAAATTCAGCCAAGGTTGTTGATGATTGGAATAGATTAAAGAACCTGAAGCAATTAAGCATCACTAAAAAATACATCAAAGAAGAAGAAATGTTGCAGTTCGATTTATCATGCGTTGGATTTATCAAACTTTATACCTCAAGAGGGCAGTATTCAGGCCTTGATAATCGCTAA

Protein sequence

MIIKIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVECLTNVRDEMKGYQIRTKAKREESNVLPNYDANDLNIMDGEEMEDEMEVGGSSIRTSRKRANMTGSVSFVEKEKEFPKKSISITSKARTKGAMDKFVYPNSAKVVDDWNRLKNLKQLSITKKYIKEEEMLQFDLSCVGFIKLYTSRGQYSGLDNR

Homology

[Close]

BLAST of Lsi05G009070 vs. ExPASy Swiss-Prot
Match: Q39089 (Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-16
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           +IEEAAEKGEL ELVL++IWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 127 RIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVE 172

[Close]

BLAST of Lsi05G009070 vs. ExPASy TrEMBL
Match: A0A6J1K329 (protein PALE CRESS, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491264 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 128 KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 173

[Close]

BLAST of Lsi05G009070 vs. ExPASy TrEMBL
Match: A0A6J1DYX0 (protein PALE CRESS, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025878 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 54/79 (68.35%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVECLTNVRDEMKGYQI 63
           KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE     R+       
Sbjct: 128 KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRE------- 187

Query: 64  RTKAKREESNVLPNYDAND 83
            T A R  + +L  YD  D
Sbjct: 188 ATPAMRLLNELLNMYDGFD 199

[Close]

BLAST of Lsi05G009070 vs. ExPASy TrEMBL
Match: A0A6J1EYI4 (protein PALE CRESS, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437380 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 128 KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 173

[Close]

BLAST of Lsi05G009070 vs. ExPASy TrEMBL
Match: A0A022S2N8 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a010526mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.7e-15
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDA+RSLDLLYRRVE
Sbjct: 129 KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAVRSLDLLYRRVE 174

[Close]

BLAST of Lsi05G009070 vs. ExPASy TrEMBL
Match: A0A6P4AA29 (protein PALE CRESS, chloroplastic-like OS=Ziziphus jujuba OX=326968 GN=LOC107425984 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           KIEEAAEKGELTELVL+VIWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 134 KIEEAAEKGELTELVLMVIWNRLDLARRDDEKDAIRSLDLLYRRVE 179

[Close]

BLAST of Lsi05G009070 vs. NCBI nr
Match: KAG7036373.1 (Protein PALE CRESS, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-14
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 3   IKIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           +KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 132 LKIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 178

[Close]

BLAST of Lsi05G009070 vs. NCBI nr
Match: XP_022995861.1 (protein PALE CRESS, chloroplastic [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 128 KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 173

[Close]

BLAST of Lsi05G009070 vs. NCBI nr
Match: XP_023534033.1 (protein PALE CRESS, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 128 KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 173

[Close]

BLAST of Lsi05G009070 vs. NCBI nr
Match: XP_022159473.1 (protein PALE CRESS, chloroplastic [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14
Identity = 54/79 (68.35%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVECLTNVRDEMKGYQI 63
           KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE     R+       
Sbjct: 128 KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRE------- 187

Query: 64  RTKAKREESNVLPNYDAND 83
            T A R  + +L  YD  D
Sbjct: 188 ATPAMRLLNELLNMYDGFD 199

[Close]

BLAST of Lsi05G009070 vs. NCBI nr
Match: XP_022931090.1 (protein PALE CRESS, chloroplastic [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 128 KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 173

[Close]

BLAST of Lsi05G009070 vs. TAIR 10
Match: AT2G48120.1 (pale cress protein (PAC) )

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-17
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           +IEEAAEKGEL ELVL++IWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 127 RIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVE 172

[Close]

BLAST of Lsi05G009070 vs. TAIR 10
Match: AT2G48120.2 (pale cress protein (PAC) )

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-17
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 4   KIEEAAEKGELTELVLLVIWNRLDLARRDDEKDAIRSLDLLYRRVE 50
           +IEEAAEKGEL ELVL++IWNRLDLARRDDEKDAIRSLDLLYRRVE
Sbjct: 121 RIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVE 166

The following BLAST results are available for this feature:

BLAST of Lsi05G009070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39089	4.4e-16	91.30	Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV...	[more]

BLAST of Lsi05G009070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K329	6.6e-15	100.00	protein PALE CRESS, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491264 PE...	[more]
A0A6J1DYX0	6.6e-15	68.35	protein PALE CRESS, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025878...	[more]
A0A6J1EYI4	6.6e-15	100.00	protein PALE CRESS, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437380 ...	[more]
A0A022S2N8	8.7e-15	97.83	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a010526mg PE...	[more]
A0A6P4AA29	1.1e-14	97.83	protein PALE CRESS, chloroplastic-like OS=Ziziphus jujuba OX=326968 GN=LOC107425...	[more]

BLAST of Lsi05G009070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036373.1	1.1e-14	97.87	Protein PALE CRESS, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022995861.1	1.4e-14	100.00	protein PALE CRESS, chloroplastic [Cucurbita maxima]	[more]
XP_023534033.1	1.4e-14	100.00	protein PALE CRESS, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022159473.1	1.4e-14	68.35	protein PALE CRESS, chloroplastic [Momordica charantia]	[more]
XP_022931090.1	1.4e-14	100.00	protein PALE CRESS, chloroplastic [Cucurbita moschata]	[more]

BLAST of Lsi05G009070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G48120.1	3.2e-17	91.30	pale cress protein (PAC)	[more]
AT2G48120.2	3.2e-17	91.30	pale cress protein (PAC)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034563	Protein PALE CRESS	PANTHER	PTHR37219	PROTEIN PALE CRESS, CHLOROPLASTIC	coord: 4..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009070.1	Lsi05G009070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010239	chloroplast mRNA processing
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0048366	leaf development
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009536	plastid