Lsi05G009000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Dimer_Tnp_hAT domain-containing protein
Location	chr05: 15894462 .. 15895385 (+)
RNA-Seq Expression	Lsi05G009000
Synteny	Lsi05G009000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAGAAATTGCAAATGATATGGAAATACAACCAATATTTCGTAAAAAACGAATGATTCAAAGAGAAAAACAATTTGATGAGAATGTTGACATTGAAGAAACACGATCACCTAAAGATTCTTTTATAATTAATTACTTTTACTATATTATAGACCAAACAATTTCTTCACCAAAAAATAAATTTGTGTTATAAAATATGAATAAAACAAGAACGAAAGAAGAACAAAACAACAAAGTAGAGAGAATTAAAAAGTAGAGATAACAATTGAACTCAACTTTGGTGTGTATTATAAAGGCACCATATACCACTATTTATAGGATATGGGATGGTGTATGTTACAAGAGTGAATTCAATGAGGGATATGTTACAATATGAAATTCAATGGAAGCTTTATGATATTTTGTAACCTATATAGATTATGGATATCTATATTCATATATTAAATTTGAACAATTTCAAGTATATGAAAATATTTTAACTTCTTATTTGATATGAAGTTTTAAAGTCATTGAATGATGATAATTTGAAAGATATTGTCTTAATCTTGAAAATACATTGAAACATGATATATTTTCTGACATTAATGATTTAGATTTATTTTTTGAATTAAAAATATTAAGAGAAGTCTTGCAAAATGAAATTGATTGTCTTATTAAAATATTAAATTATATAAAAAGGTAAATGTTTTTCCAAATGCATATATTGCTTATAGAATATTATTAACAATACCACTACGGTTGTTGCTTCTGCTGAAAGAAGCTTTTCAAAACTAAAATTAATTAAATCTTATTTAAGGTCAACTATGTCGCAAGACAGATTAAATGAATTGGCCATATTATCCATTGAAAAGGATATATTAATGAACGTAGATTATCAAAATTTAATACAGAATTTTGCATCTCAAAAAGCAAGAAAAAAAATT

mRNA sequence

CTAAAGAAATTGCAAATGATATGGAAATACAACCAATATTTCGTAAAAAACGAATGATTCAAAGAGAAAAACAATTTGATGAGAATAATATTATTAACAATACCACTACGGTTGTTGCTTCTGCTGAAAGAAGCTTTTCAAAACTAAAATTAATTAAATCTTATTTAAGGTCAACTATGTCGCAAGACAGATTAAATGAATTGGCCATATTATCCATTGAAAAGGATATATTAATGAACGTAGATTATCAAAATTTAATACAGAATTTTGCATCTCAAAAAGCAAGAAAAAAAATT

Coding sequence (CDS)

ATGGAAATACAACCAATATTTCGTAAAAAACGAATGATTCAAAGAGAAAAACAATTTGATGAGAATAATATTATTAACAATACCACTACGGTTGTTGCTTCTGCTGAAAGAAGCTTTTCAAAACTAAAATTAATTAAATCTTATTTAAGGTCAACTATGTCGCAAGACAGATTAAATGAATTGGCCATATTATCCATTGAAAAGGATATATTAATGAACGTAGATTATCAAAATTTAATACAGAATTTTGCATCTCAAAAAGCAAGAAAAAAAATT

Protein sequence

MEIQPIFRKKRMIQREKQFDENNIINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNFASQKARKKI

Homology

[Close]

BLAST of Lsi05G009000 vs. ExPASy TrEMBL
Match: A0A2G9GV96 (Dimer_Tnp_hAT domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_18255 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.0e-15
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 32  VASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNFASQKARK 91
           +ASAERSFSKLKLIKSYLRSTMSQ+RLN LAILSIEK+IL  +DY+NLI +FASQKARK
Sbjct: 248 IASAERSFSKLKLIKSYLRSTMSQERLNGLAILSIEKEILEEIDYKNLINSFASQKARK 306

[Close]

BLAST of Lsi05G009000 vs. ExPASy TrEMBL
Match: A0A151RFB6 (Zinc finger MYM-type protein 5 OS=Cajanus cajan OX=3821 GN=KK1_037310 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.7e-15
Identity = 57/90 (63.33%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1   MEIQPIFRKKRMIQREKQFDENNIINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNE 60
           M+I+P F +KR I         NIIN   T VA AERSFSKLKLIKSYLRSTM QDRLN 
Sbjct: 138 MDIEPKFNEKRKI---------NIIN--ITCVAIAERSFSKLKLIKSYLRSTMLQDRLNG 197

Query: 61  LAILSIEKDILMNVDYQNLIQNFASQKARK 91
           LAILSIE  +L  +DY+ LI NFA+QK RK
Sbjct: 198 LAILSIESKMLELLDYKTLINNFAAQKTRK 216

[Close]

BLAST of Lsi05G009000 vs. ExPASy TrEMBL
Match: A0A7N0T5Y3 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 24  IINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNF 83
           I+      VASAERSFSKLKL+K+YLRS+MSQ+RLN+LAILSIEKD+L N+DY  L+ +F
Sbjct: 594 ILLTVPVTVASAERSFSKLKLLKTYLRSSMSQERLNDLAILSIEKDMLENIDYDTLVNDF 653

Query: 84  ASQKARKKI 93
           AS+ AR+K+
Sbjct: 654 ASKNARRKL 662

[Close]

BLAST of Lsi05G009000 vs. ExPASy TrEMBL
Match: A0A7N0UCP2 (Dimer_Tnp_hAT domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.4e-14
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 24  IINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNF 83
           I+      VASAERSFSKLKL+K+YLRS+MSQ+RLN+L ILSIEKD+L N+DY  L+ +F
Sbjct: 342 ILLTVPVTVASAERSFSKLKLLKTYLRSSMSQERLNDLGILSIEKDMLENIDYDTLVSDF 401

Query: 84  ASQKARKKI 93
           AS+ AR+ I
Sbjct: 402 ASKNARRNI 410

[Close]

BLAST of Lsi05G009000 vs. ExPASy TrEMBL
Match: A0A7N0RHC1 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.7e-14
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 24  IINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNF 83
           I+      VASAERSFSKLKL+K+YLRS+MSQ+RLN+L ILSIEKD+L N+DY  L+ +F
Sbjct: 623 ILLTVPVTVASAERSFSKLKLLKTYLRSSMSQERLNDLGILSIEKDMLDNIDYDTLVSDF 682

Query: 84  ASQKARKKI 93
           AS+ AR+ I
Sbjct: 683 ASKNARRNI 691

[Close]

BLAST of Lsi05G009000 vs. NCBI nr
Match: PIN09162.1 (hypothetical protein CDL12_18255 [Handroanthus impetiginosus])

HSP 1 Score: 92.4 bits (228), Expect = 2.1e-15
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 32  VASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNFASQKARK 91
           +ASAERSFSKLKLIKSYLRSTMSQ+RLN LAILSIEK+IL  +DY+NLI +FASQKARK
Sbjct: 248 IASAERSFSKLKLIKSYLRSTMSQERLNGLAILSIEKEILEEIDYKNLINSFASQKARK 306

[Close]

BLAST of Lsi05G009000 vs. NCBI nr
Match: KYP41318.1 (Zinc finger MYM-type protein 5 [Cajanus cajan])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 57/90 (63.33%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1   MEIQPIFRKKRMIQREKQFDENNIINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNE 60
           M+I+P F +KR I         NIIN   T VA AERSFSKLKLIKSYLRSTM QDRLN 
Sbjct: 138 MDIEPKFNEKRKI---------NIIN--ITCVAIAERSFSKLKLIKSYLRSTMLQDRLNG 197

Query: 61  LAILSIEKDILMNVDYQNLIQNFASQKARK 91
           LAILSIE  +L  +DY+ LI NFA+QK RK
Sbjct: 198 LAILSIESKMLELLDYKTLINNFAAQKTRK 216

[Close]

BLAST of Lsi05G009000 vs. NCBI nr
Match: XP_038697406.1 (zinc finger MYM-type protein 1-like [Tripterygium wilfordii])

HSP 1 Score: 87.0 bits (214), Expect = 9.0e-14
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 24  IINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNF 83
           I+      VASAERSFSKLKLIKSYLRSTMSQ+RLN LA+LSIE D+  NVDY N+I +F
Sbjct: 760 ILLTIPVTVASAERSFSKLKLIKSYLRSTMSQERLNGLAMLSIESDLAENVDYTNVISDF 819

Query: 84  ASQKARKKI 93
           ASQ AR+ I
Sbjct: 820 ASQNARRVI 828

[Close]

BLAST of Lsi05G009000 vs. NCBI nr
Match: XP_012833173.1 (PREDICTED: zinc finger MYM-type protein 1-like [Erythranthe guttata])

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 24  IINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNF 83
           I+      VASAERSFSKLKLIKSYLRSTMSQ+RLN LA+LSIEKD+   +D+ +LI NF
Sbjct: 407 ILLTIPVTVASAERSFSKLKLIKSYLRSTMSQERLNGLAMLSIEKDLTEKLDFSSLISNF 466

Query: 84  ASQKARKKI 93
           A+QKAR+ I
Sbjct: 467 AAQKARRVI 475

[Close]

BLAST of Lsi05G009000 vs. NCBI nr
Match: GEX46472.1 (zinc finger MYM-type protein 1 [Tanacetum cinerariifolium])

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 22  NNIINNTTTVVASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQ 81
           N ++   T  VASAERSFSKLKLIKSYLRS+MSQ+RLN LA+++IE DIL +VDY++LI 
Sbjct: 512 NRVLLTITVTVASAERSFSKLKLIKSYLRSSMSQERLNGLALIAIENDILESVDYEDLIN 571

Query: 82  NFASQKARK 91
           +F S+ AR+
Sbjct: 572 SFGSKNARR 580

[Close]

BLAST of Lsi05G009000 vs. TAIR 10
Match: AT4G10200.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 77.8 bits (190), Expect = 5.1e-15
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 32  VASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNFASQKARKK 91
           VASAERSFSKLKLIKSY RSTMS++RLN LAILSIE+D++  +DY +L+ +FA++ AR+ 
Sbjct: 665 VASAERSFSKLKLIKSYSRSTMSEERLNALAILSIERDLVGELDYISLMNDFAAKTARRS 724

Query: 92  I 93
           I
Sbjct: 725 I 725

[Close]

BLAST of Lsi05G009000 vs. TAIR 10
Match: AT2G06500.1 (hAT family dimerisation domain )

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-14
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 32  VASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNFASQKARKK 91
           VASAERSFSKLKLIK+YLRSTMSQDRLN LAILSIE+ +L  +DY  ++ +FA + A + 
Sbjct: 519 VASAERSFSKLKLIKNYLRSTMSQDRLNGLAILSIERAMLEKIDYATVMDDFAGKNASRI 578

Query: 92  I 93
           I
Sbjct: 579 I 579

[Close]

BLAST of Lsi05G009000 vs. TAIR 10
Match: AT2G19960.1 (hAT family dimerisation domain )

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-14
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 32  VASAERSFSKLKLIKSYLRSTMSQDRLNELAILSIEKDILMNVDYQNLIQNFASQKARK 91
           VASAERSFSKLKLIKSYLRS+MSQ+RL++LAILSIE+ ++  VD++ L  +F  +K R+
Sbjct: 112 VASAERSFSKLKLIKSYLRSSMSQERLSDLAILSIERALVREVDFERLANDFVGKKGRR 170

[Close]

BLAST of Lsi05G009000 vs. TAIR 10
Match: AT2G16040.1 (hAT dimerisation domain-containing protein / transposase-related )

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-07
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 32  VASAERSFSKLKLIKSYLRSTMSQDRLNELAILSI 67
           VA AER+FSKLKLIK YLRSTMSQ+RLN LA++S+
Sbjct: 348 VALAERTFSKLKLIKKYLRSTMSQERLNGLALISV 382

The following BLAST results are available for this feature:

BLAST of Lsi05G009000 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G009000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9GV96	1.0e-15	83.05	Dimer_Tnp_hAT domain-containing protein OS=Handroanthus impetiginosus OX=429701 ...	[more]
A0A151RFB6	6.7e-15	63.33	Zinc finger MYM-type protein 5 OS=Cajanus cajan OX=3821 GN=KK1_037310 PE=4 SV=1	[more]
A0A7N0T5Y3	1.1e-14	65.22	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A7N0UCP2	7.4e-14	63.77	Dimer_Tnp_hAT domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 ...	[more]
A0A7N0RHC1	9.7e-14	63.77	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]

BLAST of Lsi05G009000 vs. NCBI nr


Match Name	E-value	Identity	Description
PIN09162.1	2.1e-15	83.05	hypothetical protein CDL12_18255 [Handroanthus impetiginosus]	[more]
KYP41318.1	1.4e-14	63.33	Zinc finger MYM-type protein 5 [Cajanus cajan]	[more]
XP_038697406.1	9.0e-14	69.57	zinc finger MYM-type protein 1-like [Tripterygium wilfordii]	[more]
XP_012833173.1	1.5e-13	68.12	PREDICTED: zinc finger MYM-type protein 1-like [Erythranthe guttata]	[more]
GEX46472.1	2.6e-13	63.77	zinc finger MYM-type protein 1 [Tanacetum cinerariifolium]	[more]

BLAST of Lsi05G009000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10200.1	5.1e-15	67.21	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT2G06500.1	1.9e-14	67.21	hAT family dimerisation domain	[more]
AT2G19960.1	5.6e-14	64.41	hAT family dimerisation domain	[more]
AT2G16040.1	1.7e-07	77.14	hAT dimerisation domain-containing protein / transposase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 32..70 e-value: 4.1E-8 score: 32.9
None	No IPR available	PANTHER	PTHR45749:SF9	AC-LIKE TRANSPOSASE	coord: 28..92
None	No IPR available	PANTHER	PTHR45749	FAMILY NOT NAMED	coord: 28..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009000.1	Lsi05G009000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity