Lsi05G008940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G008940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NERD domain-containing protein
Location	chr05: 15607798 .. 15613280 (-)
RNA-Seq Expression	Lsi05G008940
Synteny	Lsi05G008940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTATTTTTTCGTTGGTGTGGTCGGACTCCCACTTAGCTCTGGCAAAGTCGCAATCGTGTACTTTCTAGTTGCCTTGATCGAGTAGTTTTTTCCTCTGAACATACGTCGAGGGTGCTGTCATGTGGGCGGAGATTCTCTGTGGTTTCTTAGCATTTAGAGTGCTCAGGCAATTCTTTTTTCCAAGAGATGAATTGGAGATCGAGACCATTGACTCTAATGCCCTATTCGCTGCTGCGTCGAGGTACTCTTCATTTCATTCCAGCTTCGAATTCTCATCAAAGAATTTCAATTATGGGAAGGAACAATGTTTGTAATCTAATGCTAAATGTTGTCTTCTTTCTTCTTTTGGTAGGCTAGAGAAGCTTTATGGTGGAAAGACTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGTTTGCGACAGAGTATTGATATGGTGCTTGTAACGAAAGGGTAGATTTTTCGCATTTCAAATTTTGATTTGTTCTCTTTTAATTATCAAGTCTACCAGTGAAAGTAGGAAGGAAATGAACTTAATCGAGAATTTTGGAATTTGGCAGATGCTTAGTATTCGCCTTGTAACCTACAGAGAGTTAGAGTTCATATCTCTATACACTACAATGCTATTTCAGCTAAAAGAAAAATGCATGTAGAGAGAATTTGTAACAGACTTCGCTTGTGATCGTTATGATTGCTCAATCCTTTCCAGTAGAACCTTTTGGAATAATGTCACTCCTGAGGTGTAAAGTAACTAACCAAAATATCCACAAGAAGCTATGAGTTTCATTAACATCTCCCCTCAAAGAAGTGGGTAGGGAGATTGTACCAAGTTTGATTCACAAGTAAGAAAACAGCGTAAGAGATAAATACTTGGTGAGAGTGAGACGGTTAGCAAGTTGATTGGAAAAAGGTACATAATCAATATCTAACAAATCATTGAGGCCTTGATCATGAACATAGTGCATCAATTTCAATATGCTTTGTTTTAACCGTCTAATTCTTTGGTGTATTAAAAAAGAATTTCCACACTCTTCACCTAGTCAAGAAAGGCTTCTAAATCGATCTTTCAATTAAAAGAGAGTACGTCGATCTTCATTTGAAATTCTCTTGATATATTCTCACGTTCTTGGTATGGTTTTCTCTTCCCATTTCTGTTCGTCTAGGTATCTATAGGTTACATCCCCCTTATCACTTGAAACATCAGAATCTTGCTTGTTCCTCATTATTTAGTCCAATTTCCTCTACATTTGTAATTTCCCGAACAAAGTTATCATAGATTCTAGGCCTTTTCTTCGCAAAAAGCCTTAAGGATTACCTAGACCCTTTGCTGAAATTATTACTATCCTTCTACCATTTCTACTCTTTCAGAATTAAAAAGCCTTCCTATCCACTCAAACCTTCCCCATACTAAGCTTACATCATAGAGAGAGGGAGAGAGAAGTTTACATATAATCTGCTGTAACTTGCTAATGGAGAAAAAGCCACTGGCCACTCAATGAGCAATGATGTTCAATAGAAGGTTCCAATCATAAAGTTCATGCTGATAGCCTCCCCCACCCCGACAAAAGAACCGTGATTGCTACCATTGCACTTGTCACATTGGTATTCTTCTTTGCATCTGTTCATTTCCCTGAAAATACTGAGAATAATATATGAAATGTCAAGTCTCATTGAAACACGTGATGTTTGTTAATTCTGGCATTTTCTTTTTTCCCTTATCTCTTATGCCTTCAATTATTTAAATCCATACAGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAAAAGTCAGAGATTCTTCCTGATCCGGTAAGTTCCTTTCAGTTACCAAATTGTTATGAGCTTTCTCTAATATGATGCATGCAATCAGAAGTATTCTAAAGCTAATTTACTTCATTTATCTATTACTAACTTGTGAGACTATTTTCATTTTGACTGGCTCCCAATTCCCATATGGAGCTCTTGATATTAACTTTAACTGGAACATTTTGATTAAGTCAGAAAGACCTGGGTTATTCACTTGCAGGTTGCTTGCTGTTATCAATTGAGTTAGTTTCTTATTAATAAAATTTTCTTTCCATTACTTTATGCTCATGTTTCTGGTGATTGTTCTGTAGAGCTCATTCATATTAAATCCTGTTTGCATGTCTATTCTGTTGCATTTTCAGTTTAACTTTAAACCATCGAGTTAATTACCGTTATCTTTACTATAATAATTGAACTTTGTGGCAGAGAGTTTGAAAAGTTTCATGAAGCATGTCAGTGGTGATTGGATGAAATGGTATTTATCAATAAGACTTACTTAGTGTTCTCTTTTCTTTGTTTGTTTCATTGGACTTTGAGCATTAGGCTCATTTCATTAATTCAATGAAAAAGTATTGTTTCTGTTTAAAAAAAATATATAAGACTTACTTTGTGTACTGACCCCTAATAGCCCTAATTGATATGAAATGGATCTTTCAAGTGTATCAATTGTATAGTCTGAGGATTTACTACAGAAAATTAGCCATGTGACCACAGGAATTTGTTGGTAGGGTGTAGTTTACTGGTGGAAGATCCTTATCCTTGAATTCACTACAGAAGTTAAGAGGTTCAAAATCCTCTGGATCACTTCTCCTTTGCGAGTTATTCCCTCACTTTTACCATTTGTCTGATAAGGGCTACATTCTGTGGCTTCTGTCCTAGCGTCTTCCCCGTCGCTTTCTTTGGAGTGAGAGTTCCTTGGCGTCTTAATTTTAATGGAATAATACTTGTATTCCAATAATACTCATAATGTTAGGTGATAAAAATTTATTGTTGTATATTGATATGTGCAATATAGGTTTTATATAGAAGAGTGACCCATTACCAATAAGGAAAGAGAACAAAAATAAAGAAAGGAAGATATTAACAATGAATATTTACACATAAATATGCCTAAATAATATAAATTTCAACAAATACATTCATAAGATACATAACCTTTATCTTCTTATATAAGAGAAAGACGCTGAATAGATAAAACGAAAGAATCGGAATAAGAATGATATAAAATCATTAATGCATGATTTCAACTAAGTAACATATTTACAACCAACACTCTCCCCAAGCTAATTTAAATATATCTTCCATTGCCAGCATTTCAATCATTATGTCGAATTTTACTTTTGGTAGTCCTTTAGTCAACACATCGATAGTTTGCTCTATACTAGGGAAATAAGGAATACATATCACCCTTGATTCAATTTTCATCTTTGTAAAGTGTTTGTCAACCGCAATATGTTCTTATCATGTAGAATTGGCTTATGGGCGGTAGAGATAATAACCTTGTTATCGCAGGACACCCGTAAGATTAGGACTTGACATTGAAGAATTAGTAAGATCAGGGGAAATAACATTTGGGGAAAGGCAGAAACATCCCAAAAATTATCACTTCTAAATTTAGCTTCTCCCCGGAAGATAATTTTTGGGTAAAAAAAGGTTGGTTTTTCAAAAACAACACATACCCTCATATAAGCACTAGGAATATATCATACCCTCATATGATAGTTCTTTGTTTTGTTGGTTTGTGGATCAAAACATTTATACCCCTTTTTGCTAGAAGCATAGCCCAAGAAAATACATTTAATGGCTTGGTGATCAAATTTTCACCGAAGAGAACTAGGAATATGCACATAACTAGTAAACCCAAATACTTTGATAGGTAAATTAGAGTACAAACGAGTTGTCGGAAAAAATATCTTTTAAAACAACAAGTGTAGTTTTAAAATTCAAAACTTTAGAAGGCATTTAATTTATTATATAGAAGCACAAACACGGGTACAGATACGATAGGATACGATGATACATCAATTTCTGAAAAACTAGGATATAGATCCGTTGATGATACACTGTTTTCTTGATTTTTTTCTAGGATATATGTAAATTTAACATAAAGATACTAAATGCAATCCACTAAAAAGTATTAAATGTCAAGTTAATGATAATAATATAAAATAAAATACAAACACTAAAATACAATATAAAAAGCAACATCAGAGATATTGAAATGTAATAGTCAATAGAACAAAGTATAAAAGGTTGGTGGCGCTTTGGAGTTAGATCGATTAGAGAAGAAGAAGATTAAATGGAGAAATATGAAGATAAATGAAGAACTTTGTTAAATTGTTGAAGATATTCAAGTGGGTTTTTAGATGAGCGGCTTTTCTTTTTTCTTTAAAAAAATTCACGTATCTGGAAGGGGACATGCACATTTGAAATTTTTTTAAAAAAAATACGCGTACGCTAAATCGCTTATTAGATACGTATCTGGGAAGTATCTGGAAAGTATCTATCTGAGAATATTTGTATTTGATACATATCTAATACTGATTCTCTGCCTCATATGAAGCATCTGTGATGTATAGGGAAGTACTGTTTTGCCCATGAGTACTTCAGGATGTTCATTGAAAACATTATGGCCCTAACATTTAGCAAATGTTGTTCAACAATATCATTTTGTTGAAGGGTATCTCGACAAGTGGATTGGTGAACAATGCCTTTATTTCTAAATACCTCACTCTAATGTACATTGAAATGTTTAGTTTCATATCCAGAATGCAAGATTCCTATTTTTTTATTTGAAATTGGGTTTTGGTCCTATTGTAGAAACATGCAAAACATTCTTTATTTCTGATTTTTTTTTGGTTGGTAAAAAAACCTAAGGTAAATGAATGTGATCATTTTTTAAAGTCACAGACCACGGGTAAAAAAACCAAAGGTAAATTGGGTTTTGGTCCTAGTATAAACATTCTTTATTTCTGATTTTTTTCTGTTTTTTTTGGTTAGTAAAAAATTCTAAGGTAAATGAGGCCTAGTATTTGTTTTTGTAATATGAAGGAGAGTATGTGTGAAAGAAAGAAGATGAACTAGTTATATGATTAGATGCTCCAGAATCGTTAATGCATGGAGACAAATTGTAACAAGAGAAGACTTGAGAATGATTACCTTTGTAGGTCTGATTTAACAGCCAACAATGACAAAACATGGCTTAGGAAGTGTCAGTATTGTGAACTCCTTTGAATCTCATGATTCCTCTGAAATTGTGACAAATCACAAACTTCAAGGTCACAGTTTTCTCCAATGGAGTCAATCGGTTTTCATGCATACCGTATGAATCTCTAAAAGAGTTTCTAAAAAAAAATAAAAAAAAATAAAAAATAAGAAACAAGTGAGATATAGAAATGATTTATATCATGTGTTTAATTTTAAATACAGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATATTTTGAGCAGAGAGGAGTTGCACTGCCAGAAGGATATTTATCGTGGAAAGTTCTGGTTCCCAACCCAAAATTCCGGTATGTAACGGATGATTCTCTTTTTATGCTTTTTGACGATGGACTTGTTCCTTACAGCAAAAGTTAA

mRNA sequence

ATGCAATTATTTTTTCGTTGGTGTGGTCGGACTCCCACTTAGCTCTGGCAAAGTCGCAATCGTGTACTTTCTAGTTGCCTTGATCGAGTAGTTTTTTCCTCTGAACATACGTCGAGGGTGCTGTCATGTGGGCGGAGATTCTCTGTGGTTTCTTAGCATTTAGAGTGCTCAGGCAATTCTTTTTTCCAAGAGATGAATTGGAGATCGAGACCATTGACTCTAATGCCCTATTCGCTGCTGCGTCGAGGCTAGAGAAGCTTTATGGTGGAAAGACTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGTTTGCGACAGAGTATTGATATGGTGCTTGTAACGAAAGGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAAAAGTCAGAGATTCTTCCTGATCCGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATATTTTGAGCAGAGAGGAGTTGCACTGCCAGAAGGATATTTATCGTGGAAAGTTCTGGTTCCCAACCCAAAATTCCGGTATGTAACGGATGATTCTCTTTTTATGCTTTTTGACGATGGACTTGTTCCTTACAGCAAAAGTTAA

Coding sequence (CDS)

ATGTGGGCGGAGATTCTCTGTGGTTTCTTAGCATTTAGAGTGCTCAGGCAATTCTTTTTTCCAAGAGATGAATTGGAGATCGAGACCATTGACTCTAATGCCCTATTCGCTGCTGCGTCGAGGCTAGAGAAGCTTTATGGTGGAAAGACTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGTTTGCGACAGAGTATTGATATGGTGCTTGTAACGAAAGGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAAAAGTCAGAGATTCTTCCTGATCCGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATATTTTGAGCAGAGAGGAGTTGCACTGCCAGAAGGATATTTATCGTGGAAAGTTCTGGTTCCCAACCCAAAATTCCGGTATGTAACGGATGATTCTCTTTTTATGCTTTTTGACGATGGACTTGTTCCTTACAGCAAAAGTTAA

Protein sequence

MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYVTDDSLFMLFDDGLVPYSKS

Homology

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BLAST of Lsi05G008940 vs. ExPASy TrEMBL
Match: A0A0A0LKG9 (NERD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G915150 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 146/154 (94.81%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MWAEILCGFLAFRVLR+FFFPRDE+EIETIDS+ALFA ASRLEKLYGGK FVGLRIPDAD
Sbjct: 1   MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSSALFAVASRLEKLYGGKAFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
           VSILESYFEQRGVALPEGYLSWKVL+PNPKFR +
Sbjct: 121 VSILESYFEQRGVALPEGYLSWKVLLPNPKFRTI 154

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BLAST of Lsi05G008940 vs. ExPASy TrEMBL
Match: A0A6J1H014 (uncharacterized protein LOC111459180 OS=Cucurbita moschata OX=3662 GN=LOC111459180 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 134/154 (87.01%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           M+ EILCGF+AFR+LR+FF  RDELEIET DSNALFA ASRLEK+Y GK FVGLRIPDAD
Sbjct: 1   MFFEILCGFIAFRLLRRFFGQRDELEIETSDSNALFAVASRLEKIYSGKIFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVVLVKNLSGFVSVSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            SILESY E+RGVALPEGYLSWKVL+PNPKFR V
Sbjct: 121 ASILESYLERRGVALPEGYLSWKVLLPNPKFRTV 154

[Close]

BLAST of Lsi05G008940 vs. ExPASy TrEMBL
Match: A0A6J1K1B0 (uncharacterized protein LOC111490811 OS=Cucurbita maxima OX=3661 GN=LOC111490811 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.6e-70
Identity = 133/154 (86.36%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EILCGF+AFR+LR+FF   D LEIET DSNALFA ASRLEK+Y GK FVGLRIPDAD
Sbjct: 1   MWFEILCGFIAFRLLRRFFGQGDGLEIETSDSNALFAVASRLEKIYSGKIFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVVLVKNLSGFVSVSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            SILESY E+RGVALPEGYLSWKVL+PNPKFR V
Sbjct: 121 ASILESYLERRGVALPEGYLSWKVLLPNPKFRTV 154

[Close]

BLAST of Lsi05G008940 vs. ExPASy TrEMBL
Match: A0A6J1DTU9 (uncharacterized protein LOC111023945 OS=Momordica charantia OX=3673 GN=LOC111023945 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.8e-69
Identity = 129/154 (83.77%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MWAEILCGF+AFRVLR+FF P+DE+EIE  DSNA+FAAASRLEKLYGG+ F+GLRIPDAD
Sbjct: 1   MWAEILCGFIAFRVLRRFFCPKDEMEIEASDSNAIFAAASRLEKLYGGRVFLGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQSIDMVLVTKG+AVVI VKNLSG VS+SADGSWICEGDG Q+SEI+PDPV ETRRW
Sbjct: 61  TGSRQSIDMVLVTKGDAVVISVKNLSGLVSISADGSWICEGDGTQRSEIMPDPVVETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            SILESY EQRGVALPEGYLS KVL+PNPKFR V
Sbjct: 121 ASILESYLEQRGVALPEGYLSCKVLLPNPKFRTV 154

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BLAST of Lsi05G008940 vs. ExPASy TrEMBL
Match: A0A7J7CMM4 (Plasma membrane isoform 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW15G00816 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.0e-56
Identity = 104/158 (65.82%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI CG + ++++R+FF   D L++ET DSNA+F+ A+RLEKLYGGK +VGLRIPD D
Sbjct: 1   MWVEIFCGLIIYKLVRRFFVDDDLLDVETSDSNAIFSVANRLEKLYGGKAYVGLRIPDPD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TG RQ+IDMVLVTKGEAVVI VKNL+GFVS++ DGSW+CEGDGR ++E  PDPVAE +R 
Sbjct: 61  TGSRQNIDMVLVTKGEAVVISVKNLAGFVSVNGDGSWVCEGDGRHRAERYPDPVAEAKRQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYVTDDS 159
            SILE+Y EQRGVALPEGY S+K+++PNPK R +   S
Sbjct: 121 ASILEAYLEQRGVALPEGYFSYKIILPNPKVRTIHSGS 158

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BLAST of Lsi05G008940 vs. NCBI nr
Match: XP_031738513.1 (uncharacterized protein LOC101206635 isoform X2 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 6.7e-79
Identity = 146/154 (94.81%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MWAEILCGFLAFRVLR+FFFPRDE+EIETIDS+ALFA ASRLEKLYGGK FVGLRIPDAD
Sbjct: 1   MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSSALFAVASRLEKLYGGKAFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
           VSILESYFEQRGVALPEGYLSWKVL+PNPKFR +
Sbjct: 121 VSILESYFEQRGVALPEGYLSWKVLLPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. NCBI nr
Match: XP_004148346.1 (uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus] >KGN60486.1 hypothetical protein Csa_001960 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 6.7e-79
Identity = 146/154 (94.81%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MWAEILCGFLAFRVLR+FFFPRDE+EIETIDS+ALFA ASRLEKLYGGK FVGLRIPDAD
Sbjct: 1   MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSSALFAVASRLEKLYGGKAFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
           VSILESYFEQRGVALPEGYLSWKVL+PNPKFR +
Sbjct: 121 VSILESYFEQRGVALPEGYLSWKVLLPNPKFRTI 154

[Close]

BLAST of Lsi05G008940 vs. NCBI nr
Match: XP_038888004.1 (uncharacterized protein LOC120077943 [Benincasa hispida])

HSP 1 Score: 298.1 bits (762), Expect = 4.8e-77
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MWAEILCGFLAFRVLR+FFFPRDE+EIETIDSNALFA ASRLEKLYGGK FVGLRIPDAD
Sbjct: 1   MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAVASRLEKLYGGKIFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKS ILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSAILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFR 153
           V ILESYFE+RGV LPEGYLSWKVL+PNPKFR
Sbjct: 121 VLILESYFERRGVVLPEGYLSWKVLLPNPKFR 152

[Close]

BLAST of Lsi05G008940 vs. NCBI nr
Match: XP_022957721.1 (uncharacterized protein LOC111459180 [Cucurbita moschata])

HSP 1 Score: 275.8 bits (704), Expect = 2.6e-70
Identity = 134/154 (87.01%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           M+ EILCGF+AFR+LR+FF  RDELEIET DSNALFA ASRLEK+Y GK FVGLRIPDAD
Sbjct: 1   MFFEILCGFIAFRLLRRFFGQRDELEIETSDSNALFAVASRLEKIYSGKIFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVVLVKNLSGFVSVSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            SILESY E+RGVALPEGYLSWKVL+PNPKFR V
Sbjct: 121 ASILESYLERRGVALPEGYLSWKVLLPNPKFRTV 154

[Close]

BLAST of Lsi05G008940 vs. NCBI nr
Match: XP_023534697.1 (uncharacterized protein LOC111796185 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.0 bits (702), Expect = 4.4e-70
Identity = 133/154 (86.36%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           M+ EILCGF+AFR+LR+FF  RDELEIET DSNALFA ASRLEK+Y GK FVGLRIPDAD
Sbjct: 1   MFFEILCGFIAFRLLRRFFGQRDELEIETSDSNALFAVASRLEKIYSGKIFVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           TGLRQSIDMVLVTKGEAVV+ VKN+SGFVS+SADGSWICEGDGRQKSEILPDPVAETRRW
Sbjct: 61  TGLRQSIDMVLVTKGEAVVVLVKNISGFVSVSADGSWICEGDGRQKSEILPDPVAETRRW 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV 155
            SILESY E+RGVALPEGYLSWKVL+PNPKFR V
Sbjct: 121 ASILESYLERRGVALPEGYLSWKVLLPNPKFRTV 154

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BLAST of Lsi05G008940 vs. TAIR 10
Match: AT1G65020.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 201.1 bits (510), Expect = 7.5e-52
Identity = 97/176 (55.11%), Postives = 129/176 (73.30%), Query Frame = 0


Query: 1   MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDAD 60
           MW EI+CG + ++++R+FF+  +  ++ET DS ALF+ A RLEKLYGGK +VGLRIPDAD
Sbjct: 1   MWIEIICGLVIYKLVRRFFYDDEFSDVETSDSTALFSVAHRLEKLYGGKAYVGLRIPDAD 60

Query: 61  TGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEILPDPVAETRRW 120
           T  RQ ID+VLVTKG+ VVI VKNLSG V++++DGSW+CEG     +E  PDP+AE ++ 
Sbjct: 61  TASRQDIDVVLVTKGDVVVISVKNLSGIVTVTSDGSWVCEGGKHHTTETFPDPLAEVKKQ 120

Query: 121 VSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV-TDDSLFMLFDD--GLVPYSKS 174
            S+LESY EQRGV L EG +S KV++PNP FR +    S  + ++D   L P SKS
Sbjct: 121 ASVLESYLEQRGVTLLEGNVSCKVVIPNPSFRTIHAFPSEVITYEDWQQLKPVSKS 176

The following BLAST results are available for this feature:

BLAST of Lsi05G008940 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G008940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKG9	3.3e-79	94.81	NERD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G915150 PE=4 S...	[more]
A0A6J1H014	1.2e-70	87.01	uncharacterized protein LOC111459180 OS=Cucurbita moschata OX=3662 GN=LOC1114591...	[more]
A0A6J1K1B0	3.6e-70	86.36	uncharacterized protein LOC111490811 OS=Cucurbita maxima OX=3661 GN=LOC111490811...	[more]
A0A6J1DTU9	6.8e-69	83.77	uncharacterized protein LOC111023945 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A7J7CMM4	1.0e-56	65.82	Plasma membrane isoform 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW15G0081...	[more]

BLAST of Lsi05G008940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738513.1	6.7e-79	94.81	uncharacterized protein LOC101206635 isoform X2 [Cucumis sativus]	[more]
XP_004148346.1	6.7e-79	94.81	uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus] >KGN60486.1 hy...	[more]
XP_038888004.1	4.8e-77	94.08	uncharacterized protein LOC120077943 [Benincasa hispida]	[more]
XP_022957721.1	2.6e-70	87.01	uncharacterized protein LOC111459180 [Cucurbita moschata]	[more]
XP_023534697.1	4.4e-70	86.36	uncharacterized protein LOC111796185 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi05G008940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65020.1	7.5e-52	55.11	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011528	Nuclease-related domain, NERD	PFAM	PF08378	NERD	coord: 37..128 e-value: 4.8E-8 score: 33.4
IPR011528	Nuclease-related domain, NERD	PROSITE	PS50965	NERD	coord: 30..147 score: 16.787617
None	No IPR available	PANTHER	PTHR35287	SI:ZFOS-911D5.4	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G008940.1	Lsi05G008940.1	mRNA