Lsi05G008890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G008890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	L10-interacting MYB domain-containing protein-like
Location	chr05: 15475800 .. 15477162 (+)
RNA-Seq Expression	Lsi05G008890
Synteny	Lsi05G008890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTCACAAAAATCATCCGAAAAACATTGTGTTGATGAGGTTGTTGAAATTGATGGATTGAAAAATGAAGGATCATGGCCAGACAAGAATGAAGCTCGATTTGTTGACTTAATGGATGAAGAGGTTGCAAACGACAATCGACCAACCACAACATTTACAAGGACTAGTTGGAATTATATGAAGAACCAACTAAATGCTAGTACTGGATATGCTTATACTCATGATTAACTGAAAAATAAGTTTAAAAAATTAAGACAAATTTACAAATACTTCAAACAGATATTGAGTGATATGACAGAAAATGGTTGGGATCCATTATTGGGCACTATTACTCTAGAAGAGGAGCAATGGAATGATCTTTTTAAGGTATAATTAAATTGCAAGTACTTTTCTTTTCCATTTCTAATCATCTATCAAGTTATGGTTGATGTTATATATTATTGTGCTACTTCTTATAGGTGAATAAGAGAGCTAAAAAGTAAAAAAAAAAAAAAAAAAATGGTTTCCCACATTATGCAAAGCTTATGAGGATTTTTGGAGATACTATTACTACAGGGGTAAATGCTTGCCCATCAACAAAACTTCCTTCAAATTTTGAAGATGAAAATGATGTTGGAAGTGGCCCCGACATTCCCCTGCAACCTGGCTACGTCATCCTTGCCTATCCTGAATGCTTCTAAAAGTAAATGTTGTCCCCACAAACCAACACGAGTCTTGTCAAGATGCTGTGTTCGTACTCACATGCATCCTAGGAAAATCCCCAGGAGGTTACCCAACATAGGATTGCTCCAAGCTAAGCACGCTTAACTGTGGAGTTCTTATGATTGAGCTACCGAAAAAAAAGGTGCACCTTGTTGGTATAGGTAGTAACTTTCAATTCTTTTAAGCCTTTCTTAACCATGCTTTCATGTCCTCAGGATCCCTCTCATTCAGATGTAATCTCGGTTCATTCATGTCCCCCTCCTGAACTCGGGTCGTTACAATTACGAACTTTGTTGGTGAAGAAAATGATAATGAAAAAAAAGTAGAAAACGAGTTCGAAGGAAGAGGGACAAATTTGGTAGTTTCCTTTCTTCATTTATAGATGTGTATGCTGAGAACGCAAAGAGAAAAAATGACATCCTTGAGAAAAAAATCTTTTAGTTCTACCGCTAGTCAAGTTGATGAGGGTCAATCATCAAGGAAAAAAGATGAAGTTGATGAAGAGCTGATGGAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGATCTTGCTTGGAGAAAATTATTTTTGCTCATGCCTGATTCAAGGAAGAAAGATTTCATAAATAGAATCTAG

mRNA sequence

TTGTCACAAAAATCATCCGAAAAACATTGTGTTGATGAGGTTGTTGAAATTGATGGATTGAAAAATGAAGGATCATGGCCAGACAAGAATGAAGCTCGATTTGTTGACTTAATGGATGAAGAGGTTGCAAACGACAATCGACCAACCACAACATTTACAAGGACTAGTTGGAATTATATGAAGAACCAACTAAATGCTAAAAATGGTTGGGATCCATTATTGGGCACTATTACTCTAGAAGAGGAGCAATGGAATGATCTTTTTAAGATGTGTATGCTGAGAACGCAAAGAGAAAAAATGACATCCTTGAGAAAAAAATCTTTTAGTTCTACCGCTAGTCAAGTTGATGAGGGTCAATCATCAAGGAAAAAAGATGAAGTTGATGAAGAGCTGATGGAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGATCTTGCTTGGAGAAAATTATTTTTGCTCATGCCTGATTCAAGGAAGAAAGATTTCATAAATAGAATCTAG

Coding sequence (CDS)

TTGTCACAAAAATCATCCGAAAAACATTGTGTTGATGAGGTTGTTGAAATTGATGGATTGAAAAATGAAGGATCATGGCCAGACAAGAATGAAGCTCGATTTGTTGACTTAATGGATGAAGAGGTTGCAAACGACAATCGACCAACCACAACATTTACAAGGACTAGTTGGAATTATATGAAGAACCAACTAAATGCTAAAAATGGTTGGGATCCATTATTGGGCACTATTACTCTAGAAGAGGAGCAATGGAATGATCTTTTTAAGATGTGTATGCTGAGAACGCAAAGAGAAAAAATGACATCCTTGAGAAAAAAATCTTTTAGTTCTACCGCTAGTCAAGTTGATGAGGGTCAATCATCAAGGAAAAAAGATGAAGTTGATGAAGAGCTGATGGAATGTTTCAAAATTTTAAATACAATGGAGGATATTGATGGAGAGGCTTATACTAAAGTACTGAAACTTTTGCATGGAGATCTTGCTTGGAGAAAATTATTTTTGCTCATGCCTGATTCAAGGAAGAAAGATTTCATAAATAGAATCTAG

Protein sequence

LSQKSSEKHCVDEVVEIDGLKNEGSWPDKNEARFVDLMDEEVANDNRPTTTFTRTSWNYMKNQLNAKNGWDPLLGTITLEEEQWNDLFKMCMLRTQREKMTSLRKKSFSSTASQVDEGQSSRKKDEVDEELMECFKILNTMEDIDGEAYTKVLKLLHGDLAWRKLFLLMPDSRKKDFINRI

Homology

[Close]

BLAST of Lsi05G008890 vs. ExPASy TrEMBL
Match: A0A1S3CFA7 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103500275 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 106/243 (43.62%), Postives = 132/243 (54.32%), Query Frame = 0


Query: 15  VEIDGLKNEGSWPDKNEARFVDLMDEEVANDNRPTTTFTRTSWNYMKNQLNAK------- 74
           V+IDGLK E  W +K+EA FVDLMDEEVA  NRPTTTFT+TSWNYM+++LNA        
Sbjct: 3   VDIDGLKGERLWSNKSEALFVDLMDEEVAKGNRPTTTFTKTSWNYMRSELNANTGYNYSH 62

Query: 75  --------------------------NGWDPLLGTIT---------LEEEQWNDLFKMCM 134
                                     NGWDPL G I           E+E  ND+ +   
Sbjct: 63  DQLKNKFNKLRKICKAFKKILSDMTGNGWDPLFGVIACPSTRLISDFEDENENDVARNTK 122

Query: 135 L--------------RTQREKMTS-------------------LRKKSFSSTASQVDEGQ 182
           +              R  R++  S                   L K+SF  T+S+VDE Q
Sbjct: 123 IGVEENDKGKSKKRVRRNRDEFDSFFSPFLNIYAENAMRNNDILEKRSFGCTSSEVDESQ 182

[Close]

BLAST of Lsi05G008890 vs. ExPASy TrEMBL
Match: A0A5D3C5P0 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001280 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 79/182 (43.41%), Postives = 93/182 (51.10%), Query Frame = 0


Query: 68  NGWDPLLGTITLEEEQWNDLFKMCML---------------------------------- 127
           NGWDPLL TI LEEEQWN+LFK+  +                                  
Sbjct: 4   NGWDPLLDTINLEEEQWNELFKLVRIFGDTTATGVNACPSTGLISYSEDENENDVTSNTN 63

Query: 128 ----------------------------------RTQREKMTSLRKKSFSSTASQVDEGQ 182
                                                + K   L K+SF  T+SQVDE Q
Sbjct: 64  FGVEENDKGKSKKQVHRKKDKFGSFFSSFLDVYAENAKRKNDILEKRSFGCTSSQVDESQ 123

[Close]

BLAST of Lsi05G008890 vs. ExPASy TrEMBL
Match: A0A5D3DBS2 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00630 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-27
Identity = 87/214 (40.65%), Postives = 119/214 (55.61%), Query Frame = 0


Query: 1   LSQKSSEKHCVDEVVEIDGLK-----NEGSWPD-----KNEARF-----------VDLMD 60
           +SQKS+E+ CVD+VVEID LK      E  W +     K   +F           V +  
Sbjct: 62  MSQKSTEQLCVDDVVEIDELKGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFG 121

Query: 61  EEVAN--DNRPTTTFTRTSWNYMKNQLNA-------KNGWDPLLGTITLEEEQWNDLFKM 120
           +  A   +  P+T     S +  +N + +       +N           +++++   F  
Sbjct: 122 DTTATGVNACPSTRLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSS 181

Query: 121 CM---LRTQREKMTSLRKKSFSSTASQVDEGQSSRKKDEVDEELMECFKILNTMEDIDGE 180
            +       + K   L K+SF  T+SQVDE Q+S KKD++ EELMEC  ILNTMED+DGE
Sbjct: 182 FLDVYAENAKRKNDILEKRSFGCTSSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGE 241

Query: 181 AYTKVLKLLHGDLAWRKLFLLMPDSRKKDFINRI 182
           AY+K+LKLLHGDLAWRKLFL MPDSRK+DFIN +
Sbjct: 242 AYSKILKLLHGDLAWRKLFLRMPDSRKRDFINSL 275

[Close]

BLAST of Lsi05G008890 vs. ExPASy TrEMBL
Match: A0A5D3BNQ5 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00100 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.2e-27
Identity = 80/200 (40.00%), Postives = 93/200 (46.50%), Query Frame = 0


Query: 68  NGWDPLLGTITLEEEQWNDLFKM------------------------------------- 127
           NGWDPLLGTI LEEEQWN+LFK+                                     
Sbjct: 4   NGWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACPSTR 63

Query: 128 -------------------------------------------------CMLRTQREKMT 182
                                                                  + K  
Sbjct: 64  LISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKRKND 123

[Close]

BLAST of Lsi05G008890 vs. ExPASy TrEMBL
Match: A0A5A7V5Z1 (L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00520 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 82/200 (41.00%), Postives = 97/200 (48.50%), Query Frame = 0


Query: 68  NGWDPLLGTITLEEEQWNDLFKM--------------------------------C---- 127
           N WDPLLGTI LEEEQWN+LFK+                                C    
Sbjct: 4   NCWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACPSTR 63

Query: 128 -------------------------------MLRTQREKMTS------------------ 182
                                            R +++K  S                  
Sbjct: 64  LISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDKFGSFFSSFLDVYAENAKRKND 123

[Close]

BLAST of Lsi05G008890 vs. NCBI nr
Match: XP_008461742.1 (PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-39
Identity = 106/243 (43.62%), Postives = 132/243 (54.32%), Query Frame = 0


Query: 15  VEIDGLKNEGSWPDKNEARFVDLMDEEVANDNRPTTTFTRTSWNYMKNQLNAK------- 74
           V+IDGLK E  W +K+EA FVDLMDEEVA  NRPTTTFT+TSWNYM+++LNA        
Sbjct: 3   VDIDGLKGERLWSNKSEALFVDLMDEEVAKGNRPTTTFTKTSWNYMRSELNANTGYNYSH 62

Query: 75  --------------------------NGWDPLLGTIT---------LEEEQWNDLFKMCM 134
                                     NGWDPL G I           E+E  ND+ +   
Sbjct: 63  DQLKNKFNKLRKICKAFKKILSDMTGNGWDPLFGVIACPSTRLISDFEDENENDVARNTK 122

Query: 135 L--------------RTQREKMTS-------------------LRKKSFSSTASQVDEGQ 182
           +              R  R++  S                   L K+SF  T+S+VDE Q
Sbjct: 123 IGVEENDKGKSKKRVRRNRDEFDSFFSPFLNIYAENAMRNNDILEKRSFGCTSSEVDESQ 182

[Close]

BLAST of Lsi05G008890 vs. NCBI nr
Match: KAA0037002.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >TYK06650.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-28
Identity = 79/182 (43.41%), Postives = 93/182 (51.10%), Query Frame = 0


Query: 68  NGWDPLLGTITLEEEQWNDLFKMCML---------------------------------- 127
           NGWDPLL TI LEEEQWN+LFK+  +                                  
Sbjct: 4   NGWDPLLDTINLEEEQWNELFKLVRIFGDTTATGVNACPSTGLISYSEDENENDVTSNTN 63

Query: 128 ----------------------------------RTQREKMTSLRKKSFSSTASQVDEGQ 182
                                                + K   L K+SF  T+SQVDE Q
Sbjct: 64  FGVEENDKGKSKKQVHRKKDKFGSFFSSFLDVYAENAKRKNDILEKRSFGCTSSQVDESQ 123

[Close]

BLAST of Lsi05G008890 vs. NCBI nr
Match: TYK21097.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 8.2e-27
Identity = 87/214 (40.65%), Postives = 119/214 (55.61%), Query Frame = 0


Query: 1   LSQKSSEKHCVDEVVEIDGLK-----NEGSWPD-----KNEARF-----------VDLMD 60
           +SQKS+E+ CVD+VVEID LK      E  W +     K   +F           V +  
Sbjct: 62  MSQKSTEQLCVDDVVEIDELKGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFG 121

Query: 61  EEVAN--DNRPTTTFTRTSWNYMKNQLNA-------KNGWDPLLGTITLEEEQWNDLFKM 120
           +  A   +  P+T     S +  +N + +       +N           +++++   F  
Sbjct: 122 DTTATGVNACPSTRLISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSS 181

Query: 121 CM---LRTQREKMTSLRKKSFSSTASQVDEGQSSRKKDEVDEELMECFKILNTMEDIDGE 180
            +       + K   L K+SF  T+SQVDE Q+S KKD++ EELMEC  ILNTMED+DGE
Sbjct: 182 FLDVYAENAKRKNDILEKRSFGCTSSQVDESQTSNKKDDLHEELMECLDILNTMEDVDGE 241

Query: 181 AYTKVLKLLHGDLAWRKLFLLMPDSRKKDFINRI 182
           AY+K+LKLLHGDLAWRKLFL MPDSRK+DFIN +
Sbjct: 242 AYSKILKLLHGDLAWRKLFLRMPDSRKRDFINSL 275

[Close]

BLAST of Lsi05G008890 vs. NCBI nr
Match: TYJ96795.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >TYK00864.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >TYK19200.1 L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 80/200 (40.00%), Postives = 93/200 (46.50%), Query Frame = 0


Query: 68  NGWDPLLGTITLEEEQWNDLFKM------------------------------------- 127
           NGWDPLLGTI LEEEQWN+LFK+                                     
Sbjct: 4   NGWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACPSTR 63

Query: 128 -------------------------------------------------CMLRTQREKMT 182
                                                                  + K  
Sbjct: 64  LISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDEFGSFFSSFLDVYAENAKRKND 123

[Close]

BLAST of Lsi05G008890 vs. NCBI nr
Match: KAA0061221.1 (L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-26
Identity = 82/200 (41.00%), Postives = 97/200 (48.50%), Query Frame = 0


Query: 68  NGWDPLLGTITLEEEQWNDLFKM--------------------------------C---- 127
           N WDPLLGTI LEEEQWN+LFK+                                C    
Sbjct: 4   NCWDPLLGTINLEEEQWNELFKVNKRAKKFRKSGCPHYEKLVRIFGDTTATGVNACPSTR 63

Query: 128 -------------------------------MLRTQREKMTS------------------ 182
                                            R +++K  S                  
Sbjct: 64  LISDSEDENENDVASNTNVGVEENNKGKSKKRFRRKKDKFGSFFSSFLDVYAENAKRKND 123

The following BLAST results are available for this feature:

BLAST of Lsi05G008890 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G008890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFA7	1.2e-39	43.62	L10-interacting MYB domain-containing protein-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5D3C5P0	1.2e-28	43.41	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]
A0A5D3DBS2	4.0e-27	40.65	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]
A0A5D3BNQ5	5.2e-27	40.00	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]
A0A5A7V5Z1	2.0e-26	41.00	L10-interacting MYB domain-containing protein-like OS=Cucumis melo var. makuwa O...	[more]

BLAST of Lsi05G008890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461742.1	2.4e-39	43.62	PREDICTED: L10-interacting MYB domain-containing protein-like [Cucumis melo]	[more]
KAA0037002.1	2.5e-28	43.41	L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >T...	[more]
TYK21097.1	8.2e-27	40.65	L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa]	[more]
TYJ96795.1	1.1e-26	40.00	L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa] >T...	[more]
KAA0061221.1	4.1e-26	41.00	L10-interacting MYB domain-containing protein-like [Cucumis melo var. makuwa]	[more]

BLAST of Lsi05G008890 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 25..69 e-value: 4.5E-5 score: 24.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..124
None	No IPR available	PANTHER	PTHR47584:SF3	L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN-LIKE	coord: 99..179
None	No IPR available	PANTHER	PTHR47584	FAMILY NOT NAMED	coord: 22..69 coord: 99..179
None	No IPR available	PANTHER	PTHR47584:SF3	L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN-LIKE	coord: 22..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G008890.1	Lsi05G008890.1	mRNA