Lsi05G008860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G008860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr05: 15422948 .. 15423369 (+)
RNA-Seq Expression	Lsi05G008860
Synteny	Lsi05G008860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGACATTTATGAAAAACATAAGGAGATTCTTGATATATTGGGCAACATAAAAGAAGCTATCAATGATATACTTCCACCAAAAGAAGAAGGTAACAAAAAATAGTCTGAAGAAAAACTTGAGAAGAACAATGCTCCATCATCCAGTTTGGAGCTTTTAGATGCAAGTTTGGAGCTTTTAGATGCAAGTTTGGAACTTATAGATGTTGGAGGTAAAGAGGTAAAATTTGTGATTTTTGTTTTTTTTTTTGTATAAAAAAGTATAATAATTTTTATATCATGCAGAATGAAGTTGAAACTGCGGAGGACAAGAAGGCTCAAGAAAATGACCAACAGAAGCAAGATAATGAAAATGTAAAAGTGCAAGATGAAGAGAAAGATCGGGAAGAAGAAAGAGATAAAGATAAAGAAGAGGAAGAGAAT

mRNA sequence

AAAGACATTTATGAAAAACATAAGGAGATTCTTGATATATTGGGCAACATAAAAGAAGCTATCAATGATATACTTCCACCAAAAGAAGAAGAAAAACTTGAGAAGAACAATGCTCCATCATCCAGTTTGGAGCTTTTAGATGCAAGTTTGGAGCTTTTAGATGCAAGTTTGGAACTTATAGATGTTGGAGGTAAAGAGAATGAAGTTGAAACTGCGGAGGACAAGAAGGCTCAAGAAAATGACCAACAGAAGCAAGATAATGAAAATGTAAAAGTGCAAGATGAAGAGAAAGATCGGGAAGAAGAAAGAGATAAAGATAAAGAAGAGGAAGAGAAT

Coding sequence (CDS)

AAAGACATTTATGAAAAACATAAGGAGATTCTTGATATATTGGGCAACATAAAAGAAGCTATCAATGATATACTTCCACCAAAAGAAGAAGAAAAACTTGAGAAGAACAATGCTCCATCATCCAGTTTGGAGCTTTTAGATGCAAGTTTGGAGCTTTTAGATGCAAGTTTGGAACTTATAGATGTTGGAGGTAAAGAGAATGAAGTTGAAACTGCGGAGGACAAGAAGGCTCAAGAAAATGACCAACAGAAGCAAGATAATGAAAATGTAAAAGTGCAAGATGAAGAGAAAGATCGGGAAGAAGAAAGAGATAAAGATAAAGAAGAGGAAGAGAAT

Protein sequence

KDIYEKHKEILDILGNIKEAINDILPPKEEEKLEKNNAPSSSLELLDASLELLDASLELIDVGGKENEVETAEDKKAQENDQQKQDNENVKVQDEEKDREEERDKDKEEEEN

Homology

[Close]

BLAST of Lsi05G008860 vs. NCBI nr
Match: XP_038891747.1 (pescadillo homolog [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-12
Identity = 69/119 (57.98%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   KDIYEKHKEILDILGNIKEAINDILPPKEE-------EKLEKNNAPSSSLELLDASLELL 60
           KDI EKHKEILDILG+IK+AI+D LP KEE       E LEKN APSSSLELLDASLE+L
Sbjct: 111 KDINEKHKEILDILGHIKKAISDKLPQKEEGGEKQSQESLEKNKAPSSSLELLDASLEVL 170

Query: 61  DASLELIDVGGKENEVETAEDKKA---QENDQQKQDNENVKVQDEEKDREEERDKDKEE 110
           +A            EV TA+DK+A   QENDQQ+Q +++   +DEE+D+EE   KDKE+
Sbjct: 171 EA------------EVNTAKDKEAQDDQENDQQEQLHDD--PEDEEEDQEE---KDKED 212

[Close]

BLAST of Lsi05G008860 vs. NCBI nr
Match: XP_038880505.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-11
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 1   KDIYEKHKEILDILGNIKEAINDILPPKE---EEKLEKNNAPSSSLELLDASLELLDASL 60
           KDI EKHKEILDILG+IKE+I+D LP KE   +E LEKN APSSSLELLDASLE+L+A  
Sbjct: 104 KDINEKHKEILDILGHIKESISDKLPQKEKQSQESLEKNKAPSSSLELLDASLEVLEA-- 163

Query: 61  ELIDVGGKENEVETAEDKKA---QENDQQKQ---DNENVKVQDEEKDREEERDKDKEEE 111
                     EV+T +DK+A   QENDQQ+Q   D E+ +   EEKD+E+ R K+  E+
Sbjct: 164 ----------EVDTNKDKEAQDDQENDQQEQLHDDPEDEEEDQEEKDKEDMRKKNVIEK 210

[Close]

BLAST of Lsi05G008860 vs. NCBI nr
Match: XP_038876482.1 (glutamic acid-rich protein-like, partial [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 8.1e-09
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 1   KDIYEKHKEILDILGNIKEAINDILPPKEE-------EKLEKNNAPSSSLELLDASLELL 60
           KDI EKHKEILDILG+IKEAI+D L  KEE       E LEKN APSSSLELL ASLE+L
Sbjct: 65  KDINEKHKEILDILGHIKEAISDKLLQKEEGGEKQSQESLEKNKAPSSSLELLGASLEVL 124

Query: 61  DASLELIDVGGKENEVETAEDKKA---QENDQQKQDNENVKVQDEEKDREEERDKDKEEE 113
           +A            EV+TA+DK+A   QENDQQ+Q  ++   +DEE D +EE+DK    +
Sbjct: 125 EA------------EVDTAKDKEAQDDQENDQQEQLQDD--PEDEEGD-QEEKDKGDMTK 171

The following BLAST results are available for this feature:

BLAST of Lsi05G008860 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G008860 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G008860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891747.1	2.1e-12	57.98	pescadillo homolog [Benincasa hispida]	[more]
XP_038880505.1	3.0e-11	56.30	glutamic acid-rich protein-like [Benincasa hispida]	[more]
XP_038876482.1	8.1e-09	54.92	glutamic acid-rich protein-like, partial [Benincasa hispida]	[more]

BLAST of Lsi05G008860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G008860.1	Lsi05G008860.1	mRNA