Lsi05G008530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G008530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cleavage and polyadenylation specificity factor subunit 1
Location	chr05: 14061165 .. 14063945 (-)
RNA-Seq Expression	Lsi05G008530
Synteny	Lsi05G008530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTGGTGGGGTGAGGGGGTCTTAATTACTTAGACGTTACTATTAATCTTTCTTTTCTTAGAACTCTTTCAATTGACTAATTTTCTTTCGATTGCTTTTTCCTTTTTCCGTTTTATGCTGTAGAACCTCCCTCATGATGCTTACAAGCTACTTGCGGTGCCATCACCAATTGGTGGTGTACTTGTCGTCAGTGCAAATAGTATTTACTATCACAGTCAGGTAGCATTCATTTTCTGTTCATGTACTTTTAATGAACAAAGTATGCCTTCTGCCAAAAAAAAAAAAGAAAAAAAGAAAAAAGAAAAAAGAGCTGAAGTAATTTTTTGTACGAGTGGCCTCGTCCTATATGGCTTTCTCCACTTTACATTTTGGTTACTTACTCTGGAATTTTGTCATACTTTTGTCAATCTAATGTGCTGGTTCTCTATTTCAGTCAGCTTCATGCATGTTGGCTTTGAATAATTATGCTGTTTCTGCCGATAGCAGGTTGTGTTTCTCTCTCATTTTCATTTTTTGTTTATTTATCTGCTTTTTTCATTTATATTTACGTGACCATTTCCAACCTCTCCTCCTCCTTGAAATTGGAAAGAAACATGTTATCTGTCTAATATCGTTTATCAGTTTTTATTTTGGCATTCATGCTGGGACATCATGTAAATCAATATTTTTTTTTTGAATAATATGTAAATCACATGCCTATATAAGATAACAAGTAGAATGTTTTCATAAGGGGAAAAAAAAAAGATAACAAGTAGAATGTAAATCAATTTTGGCATTCAGTTCTGTAATGCTGGATAATGTATCCGTTGAACTGAACATTATTTTTCTTTTTTCTTGAGTGGTTGAGATATTTAGGGTTGTTGAGTTTTTTTTCTGTACCCTTTTGGTTGTGGTCCTTGGAAATTGATATCCCAAACTGGACCTCATTTCCTCCATTTTGTTGATTTTTACGTTAGGAATGACATCCACATTCATTTTATGAAGGATTGCAATTCATTTTATGAAGGATTGTTGTTGTGCAGTGCCCTTCGTTTGGTTTCTTTCACCTGGTTATCTCATGGACTTTATCTTCTTGTTCTTCCATTGTTTCCAGATTCCTTTCTTCTTCTTTTTCTTTTTCTTTCTTTTAAAAGATACTGAATCCATTAATGAGTTAATGCCTCAAATACAAGGCGAAGGCCCATATAAATAGGGGAAACCGGAAGATAGGCTTAACTAACAAAGATAACTAACATCTTATCAAAAACTAAAAAAGGGAAAAAAAACCTTTTTGGTCCCTAAGTTTTGAGTCTAGTTTCCATTTGGTCCCTAAGTTTCAAAATGTCATATATGAAGTCCTTAAGTTTTGAGTTTGATTTCAATTTAGTCCCTTAGGTTTCAAAATATTTGTTGTGGTTTTTCTCCCATCTTTCCTTTATTGATAGAAGCTGGGCTCTTTTGTTCTTGGAGTTTCAGGCTGTTTTCTGGGGTATTTGGTTAGAAAAAAATAGTTTTCAGGAGTACAAGGAGGTTTGCAGTGGTGTGCAATATAATGCCTTTTTGTGGGCCATTTCATCTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTTTTTTGTGGGCTTTTTTTTTTTTTTTTTTTTTTTGGTATAGCCTTTTTCATTTCTTGGTTTTTTTTGTCGCAAACTTATGGTTTCATCATTATAATTCAGTCAAGACATGCCTAGATCAAATTTCAATGTGGAATTGGATGCTGCCAGTGCTACATGGTTGGTAAATGATGTGGCCTTGCTGTCAACCAAGACTGGGGAGCTATTATTGCTGGCACTTGTCTATGATGGACGGTGAGTGCTTCCAGTTTTCTTGGTGCCCATATGTTTCCAATTTCACAGCATCATCATCATAATTGTCAGCTTCTCTCCTTCGAACATTTTTAGGATGAAATAATACTCTGTTGATTTGCAGGGTTGTGCAGAGACTTGATCTTTCAAAGTCTAAAGCTTCAGTACTTACATCGGTTAGTTAGATTTGTTGTAATTTTAAGCCAGGAAACTTTGATGCTACTTTGTCCTACCTTTTTAGTTGCTAGTTTGATTAAAAAACGAGGTTTATGTATAAGTATATAAATTCTGTTTTATTATTGATAGGGAACATGAAAGAATATTGAAATTGATGTTTATATATGTATATCTTGTTGGAATTATATGTAGGGCATTGCATCAATTGGAAATTCATTATTTTTTCTGGGCAGTCGATTGGGAGATAGTTTACTTGTGCAGTTTAGTTGTGGAGTGGGATCTTCAGGATTGGCATCCAGTTTAAAGGACGAGGTTTGTTGGGCTCCATAACTTTACTTTTGCTAATTACTTTGGACTTGCTTTTGTTGCTTACTTTGGACACTTCTAGTTAATGTTGTTTCCTTGTATTTTGGTGAGTCTTTGTTGAAGTGTTGATATGATAAATATTTTTTTTTAA

mRNA sequence

ATGAACCTCCCTCATGATGCTTACAAGCTACTTGCGGTGCCATCACCAATTGGTGGTGTACTTGTCGTCAGTGCAAATAGTATTTACTATCACAGTCAGTCAGCTTCATGCATGTTGGCTTTGAATAATTATGCTGTTTCTGCCGATAGCAGTCAAGACATGCCTAGATCAAATTTCAATGTGGAATTGGATGCTGCCAGTGCTACATGGTTGGTAAATGATGTGGCCTTGCTGTCAACCAAGACTGGGGAGCTATTATTGCTGGCACTTGTCTATGATGGACGGGTTGTGCAGAGACTTGATCTTTCAAAGTCTAAAGCTTCAGTACTTACATCGGGCATTGCATCAATTGGAAATTCATTATTTTTTCTGGGCAGTCGATTGGGAGATAGTTTACTTGTGCAGTTTAGTTGTGGAGTGGGATCTTCAGGATTGGCATCCAGTTTAAAGGACGAGGTTTGTTGGGCTCCATAACTTTACTTTTGCTAATTACTTTGGACTTGCTTTTGTTGCTTACTTTGGACACTTCTAGTTAATGTTGTTTCCTTGTATTTTGGTGAGTCTTTGTTGAAGTGTTGATATGATAAATATTTTTTTTTAA

Coding sequence (CDS)

ATGAACCTCCCTCATGATGCTTACAAGCTACTTGCGGTGCCATCACCAATTGGTGGTGTACTTGTCGTCAGTGCAAATAGTATTTACTATCACAGTCAGTCAGCTTCATGCATGTTGGCTTTGAATAATTATGCTGTTTCTGCCGATAGCAGTCAAGACATGCCTAGATCAAATTTCAATGTGGAATTGGATGCTGCCAGTGCTACATGGTTGGTAAATGATGTGGCCTTGCTGTCAACCAAGACTGGGGAGCTATTATTGCTGGCACTTGTCTATGATGGACGGGTTGTGCAGAGACTTGATCTTTCAAAGTCTAAAGCTTCAGTACTTACATCGGGCATTGCATCAATTGGAAATTCATTATTTTTTCTGGGCAGTCGATTGGGAGATAGTTTACTTGTGCAGTTTAGTTGTGGAGTGGGATCTTCAGGATTGGCATCCAGTTTAAAGGACGAGGTTTGTTGGGCTCCATAA

Protein sequence

MNLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEVCWAP

Homology

[Close]

BLAST of Lsi05G008530 vs. ExPASy Swiss-Prot
Match: Q9FGR0 (Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CPSF160 PE=1 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-59
Identity = 119/152 (78.29%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MNLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFN 60
           +NLPHDAYKLLAVPSPIGGVLV+ AN+I+YHSQSASC LALNNYA SADSSQ++P SNF+
Sbjct: 305 INLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELPASNFS 364

Query: 61  VELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNS 120
           VELDAA  TW+ NDVALLSTK+GELLLL L+YDGR VQRLDLSKSKASVL S I S+GNS
Sbjct: 365 VELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDITSVGNS 424

Query: 121 LFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE 153
           LFFLGSRLGDSLLVQFSC  G +     L+DE
Sbjct: 425 LFFLGSRLGDSLLVQFSCRSGPAASLPGLRDE 456

[Close]

BLAST of Lsi05G008530 vs. ExPASy Swiss-Prot
Match: Q7XWP1 (Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0252200 PE=3 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 4.0e-49
Identity = 99/136 (72.79%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAY+LLAVP PI GVLV+ ANSI+YHSQS SC L LNN++   D S ++ +SNF V
Sbjct: 308 NLPHDAYQLLAVPPPISGVLVICANSIHYHSQSTSCSLDLNNFSSHPDGSPEISKSNFQV 367

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA ATWL ND+ + STK GE+LLL +VYDGRVVQRLDL KSKASVL+S + SIGNS 
Sbjct: 368 ELDAAKATWLSNDIVMFSTKAGEMLLLTVVYDGRVVQRLDLMKSKASVLSSAVTSIGNSF 427

Query: 122 FFLGSRLGDSLLVQFS 138
           FFLGSRLGDSLLVQFS
Sbjct: 428 FFLGSRLGDSLLVQFS 443

[Close]

BLAST of Lsi05G008530 vs. ExPASy Swiss-Prot
Match: A0A0R4IC37 (Cleavage and polyadenylation specificity factor subunit 1 OS=Danio rerio OX=7955 GN=cpsf1 PE=3 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-16
Identity = 51/138 (36.96%), Postives = 85/138 (61.59%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFN 61
           NLP D  +++AVP PIGGV+V + NS+ Y +QS     ++LN+      +    P+    
Sbjct: 260 NLPFDCNQVMAVPKPIGGVVVFAVNSLLYLNQSVPPFGVSLNSLTNGTTAFPLRPQEEVK 319

Query: 62  VELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQRLDLSKSKASVLTSGIASIGN 121
           + LD + A+++ +D  ++S K GE+ +L L+ DG R V+     K+ ASVLT+ + ++  
Sbjct: 320 ITLDCSQASFITSDKMVISLKGGEIYVLTLITDGMRSVRAFHFDKAAASVLTTCMMTMEP 379

Query: 122 SLFFLGSRLGDSLLVQFS 138
              FLGSRLG+SLL++++
Sbjct: 380 GYLFLGSRLGNSLLLRYT 397

[Close]

BLAST of Lsi05G008530 vs. ExPASy Swiss-Prot
Match: Q10570 (Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens OX=9606 GN=CPSF1 PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-16
Identity = 53/138 (38.41%), Postives = 82/138 (59.42%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFN 61
           +LP D  + LAVP PIGGV+V + NS+ Y +QS     +ALN+      +     +    
Sbjct: 260 SLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVR 319

Query: 62  VELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQRLDLSKSKASVLTSGIASIGN 121
           + LD A AT++  D  ++S K GE+ +L L+ DG R V+     K+ ASVLT+ + ++  
Sbjct: 320 ITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHFDKAAASVLTTSMVTMEP 379

Query: 122 SLFFLGSRLGDSLLVQFS 138
              FLGSRLG+SLL++++
Sbjct: 380 GYLFLGSRLGNSLLLKYT 397

[Close]

BLAST of Lsi05G008530 vs. ExPASy Swiss-Prot
Match: Q10569 (Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus OX=9913 GN=CPSF1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-15
Identity = 51/138 (36.96%), Postives = 81/138 (58.70%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFN 61
           +LP D  + LAVP PIGGV++ + NS+ Y +QS     +ALN+      +     +    
Sbjct: 263 SLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEGVR 322

Query: 62  VELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQRLDLSKSKASVLTSGIASIGN 121
           + LD A A ++  D  ++S K GE+ +L L+ DG R V+     K+ ASVLT+ + ++  
Sbjct: 323 ITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHFDKAAASVLTTSMVTMEP 382

Query: 122 SLFFLGSRLGDSLLVQFS 138
              FLGSRLG+SLL++++
Sbjct: 383 GYLFLGSRLGNSLLLKYT 400

[Close]

BLAST of Lsi05G008530 vs. ExPASy TrEMBL
Match: A0A6J1DTM4 (cleavage and polyadenylation specificity factor subunit 1 OS=Momordica charantia OX=3673 GN=LOC111023895 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.0e-72
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNV
Sbjct: 211 NLPHDAYKLLAVPSPIGGVLVVSANSIHYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 270

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA+A+WL+NDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL
Sbjct: 271 ELDAANASWLLNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 330

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 154
           FFLGSRLGDSLLVQFSCGVGSSGL SSLKDEV
Sbjct: 331 FFLGSRLGDSLLVQFSCGVGSSGLTSSLKDEV 362

[Close]

BLAST of Lsi05G008530 vs. ExPASy TrEMBL
Match: A0A6J1I7X9 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472174 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVS DSSQDMPRSNFNV
Sbjct: 302 NLPHDAYKLLAVPSPIGGVLVVSANSIHYHSQSASCMLALNNYAVSPDSSQDMPRSNFNV 361

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA ATWL+NDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIG+SL
Sbjct: 362 ELDAAHATWLLNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGSSL 421

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 154
           FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Sbjct: 422 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 453

[Close]

BLAST of Lsi05G008530 vs. ExPASy TrEMBL
Match: A0A6J1IBS0 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472174 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVS DSSQDMPRSNFNV
Sbjct: 44  NLPHDAYKLLAVPSPIGGVLVVSANSIHYHSQSASCMLALNNYAVSPDSSQDMPRSNFNV 103

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA ATWL+NDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIG+SL
Sbjct: 104 ELDAAHATWLLNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGSSL 163

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 154
           FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Sbjct: 164 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 195

[Close]

BLAST of Lsi05G008530 vs. ExPASy TrEMBL
Match: A0A0A0LKI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074280 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 146/151 (96.69%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLV+SANSI+Y+SQSASCMLALNNYAVSADSSQDMPRSNFNV
Sbjct: 302 NLPHDAYKLLAVPSPIGGVLVISANSIHYNSQSASCMLALNNYAVSADSSQDMPRSNFNV 361

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL
Sbjct: 362 ELDAANATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 421

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDE 153
           FFLGSRLGDSLLVQFSCGVGSSGLAS+LKDE
Sbjct: 422 FFLGSRLGDSLLVQFSCGVGSSGLASNLKDE 452

[Close]

BLAST of Lsi05G008530 vs. ExPASy TrEMBL
Match: A0A5A7U6U4 (Cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00480 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.6e-71
Identity = 145/151 (96.03%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLV+SANSI+Y+SQSASCMLALNNYAVSADSSQDMPRSNFNV
Sbjct: 302 NLPHDAYKLLAVPSPIGGVLVISANSIHYNSQSASCMLALNNYAVSADSSQDMPRSNFNV 361

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVL SGIASIGNSL
Sbjct: 362 ELDAANATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLASGIASIGNSL 421

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDE 153
           FFLGSRLGDSLLVQFSCGVGSSGLAS+LKDE
Sbjct: 422 FFLGSRLGDSLLVQFSCGVGSSGLASNLKDE 452

[Close]

BLAST of Lsi05G008530 vs. NCBI nr
Match: XP_038887723.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 284.3 bits (726), Expect = 6.5e-73
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNV
Sbjct: 44  NLPHDAYKLLAVPSPIGGVLVVSANSIHYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 103

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL
Sbjct: 104 ELDAANATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 163

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 154
           FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Sbjct: 164 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 195

[Close]

BLAST of Lsi05G008530 vs. NCBI nr
Match: XP_038887722.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 284.3 bits (726), Expect = 6.5e-73
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNV
Sbjct: 302 NLPHDAYKLLAVPSPIGGVLVVSANSIHYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 361

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL
Sbjct: 362 ELDAANATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 421

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 154
           FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Sbjct: 422 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 453

[Close]

BLAST of Lsi05G008530 vs. NCBI nr
Match: XP_038887724.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X3 [Benincasa hispida])

HSP 1 Score: 284.3 bits (726), Expect = 6.5e-73
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNV
Sbjct: 18  NLPHDAYKLLAVPSPIGGVLVVSANSIHYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 77

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL
Sbjct: 78  ELDAANATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 137

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 154
           FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Sbjct: 138 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 169

[Close]

BLAST of Lsi05G008530 vs. NCBI nr
Match: XP_022157087.1 (cleavage and polyadenylation specificity factor subunit 1 [Momordica charantia])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNV
Sbjct: 211 NLPHDAYKLLAVPSPIGGVLVVSANSIHYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 270

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA+A+WL+NDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL
Sbjct: 271 ELDAANASWLLNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 330

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 154
           FFLGSRLGDSLLVQFSCGVGSSGL SSLKDEV
Sbjct: 331 FFLGSRLGDSLLVQFSCGVGSSGLTSSLKDEV 362

[Close]

BLAST of Lsi05G008530 vs. NCBI nr
Match: XP_022973595.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 278.5 bits (711), Expect = 3.6e-71
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVS DSSQDMPRSNFNV
Sbjct: 44  NLPHDAYKLLAVPSPIGGVLVVSANSIHYHSQSASCMLALNNYAVSPDSSQDMPRSNFNV 103

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
           ELDAA ATWL+NDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIG+SL
Sbjct: 104 ELDAAHATWLLNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGSSL 163

Query: 122 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 154
           FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Sbjct: 164 FFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV 195

[Close]

BLAST of Lsi05G008530 vs. TAIR 10
Match: AT5G51660.1 (cleavage and polyadenylation specificity factor 160 )

HSP 1 Score: 230.7 bits (587), Expect = 8.0e-61
Identity = 119/152 (78.29%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MNLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFN 60
           +NLPHDAYKLLAVPSPIGGVLV+ AN+I+YHSQSASC LALNNYA SADSSQ++P SNF+
Sbjct: 305 INLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELPASNFS 364

Query: 61  VELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNS 120
           VELDAA  TW+ NDVALLSTK+GELLLL L+YDGR VQRLDLSKSKASVL S I S+GNS
Sbjct: 365 VELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDITSVGNS 424

Query: 121 LFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE 153
           LFFLGSRLGDSLLVQFSC  G +     L+DE
Sbjct: 425 LFFLGSRLGDSLLVQFSCRSGPAASLPGLRDE 456

[Close]

BLAST of Lsi05G008530 vs. TAIR 10
Match: AT4G21100.1 (damaged DNA binding protein 1B )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 36/143 (25.17%), Postives = 63/143 (44.06%), Query Frame = 0


Query: 2   NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNV 61
           NL + A  L+ VPSP+ GVL++   +I Y S +A   + +      A    D+  S +  
Sbjct: 211 NLDNGADLLIPVPSPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDLDGSRY-- 270

Query: 62  ELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVLTSGIASIGNSL 121
                          LL    G + LL + ++   V  L +     + + S I+ + N++
Sbjct: 271 ---------------LLGDHAGLIHLLVITHEKEKVTGLKIELLGETSIASSISYLDNAV 330

Query: 122 FFLGSRLGDSLLVQFSCGVGSSG 145
            F+GS  GDS L++ +    + G
Sbjct: 331 VFVGSSYGDSQLIKLNLQPDAKG 336

The following BLAST results are available for this feature:

BLAST of Lsi05G008530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGR0	1.1e-59	78.29	Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thalian...	[more]
Q7XWP1	4.0e-49	72.79	Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sati...	[more]
A0A0R4IC37	2.6e-16	36.96	Cleavage and polyadenylation specificity factor subunit 1 OS=Danio rerio OX=7955...	[more]
Q10570	4.5e-16	38.41	Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens OX=960...	[more]
Q10569	2.2e-15	36.96	Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus OX=9913 ...	[more]

BLAST of Lsi05G008530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTM4	6.0e-72	96.71	cleavage and polyadenylation specificity factor subunit 1 OS=Momordica charantia...	[more]
A0A6J1I7X9	1.7e-71	96.71	cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucurbit...	[more]
A0A6J1IBS0	1.7e-71	96.71	cleavage and polyadenylation specificity factor subunit 1 isoform X2 OS=Cucurbit...	[more]
A0A0A0LKI9	1.7e-71	96.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074280 PE=4 SV=1	[more]
A0A5A7U6U4	6.6e-71	96.03	Cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucumis ...	[more]

BLAST of Lsi05G008530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887723.1	6.5e-73	98.68	cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa ...	[more]
XP_038887722.1	6.5e-73	98.68	cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Benincasa ...	[more]
XP_038887724.1	6.5e-73	98.68	cleavage and polyadenylation specificity factor subunit 1 isoform X3 [Benincasa ...	[more]
XP_022157087.1	1.2e-71	96.71	cleavage and polyadenylation specificity factor subunit 1 [Momordica charantia]	[more]
XP_022973595.1	3.6e-71	96.71	cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita ...	[more]

BLAST of Lsi05G008530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51660.1	8.0e-61	78.29	cleavage and polyadenylation specificity factor 160	[more]
AT4G21100.1	1.1e-04	25.17	damaged DNA binding protein 1B	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018846	Cleavage/polyadenylation specificity factor, A subunit, N-terminal	PFAM	PF10433	MMS1_N	coord: 3..137 e-value: 1.7E-8 score: 33.5
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..143 e-value: 5.2E-28 score: 99.9
None	No IPR available	PANTHER	PTHR10644:SF2	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1	coord: 2..137
None	No IPR available	PANTHER	PTHR10644	DNA REPAIR/RNA PROCESSING CPSF FAMILY	coord: 2..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G008530.1	Lsi05G008530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0005515	protein binding