Lsi05G008130 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G008130
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
Locationchr05: 12554025 .. 12554366 (+)
RNA-Seq ExpressionLsi05G008130
SyntenyLsi05G008130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGATCTAGGTTTTCCATTTTCGGAACCGGTGCTGCTGCTGATAAGGTCGAGAAGTCGGCAAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGCTCCTCTGTCGCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTAGTTTTGAGATTATTGGGCTCCAGAAGTTGGACGCTCAGTGGTTTAGCACTCAGAAGCCAATCCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCCTTCTATATGATATTGTTCTCAACCGTTGCCTTCTCCTTGTGTAA

mRNA sequence

ATGTTTGGATCTAGGTTTTCCATTTTCGGAACCGGTGCTGCTGCTGATAAGGTCGAGAAGTCGGCAAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGCTCCTCTGTCGCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTAGTTTTGAGATTATTGGGCTCCAGAAGTTGGACGCTCAGTGGTTTAGCACTCAGAAGCCAATCCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCCTTCTATATGATATTGTTCTCAACCGTTGCCTTCTCCTTGTGTAA

Coding sequence (CDS)

ATGTTTGGATCTAGGTTTTCCATTTTCGGAACCGGTGCTGCTGCTGATAAGGTCGAGAAGTCGGCAAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGCTCCTCTGTCGCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTAGTTTTGAGATTATTGGGCTCCAGAAGTTGGACGCTCAGTGGTTTAGCACTCAGAAGCCAATCCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCCTTCTATATGATATTGTTCTCAACCGTTGCCTTCTCCTTGTGTAA

Protein sequence

MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRGSKSLLYDIVLNRCLLLV
Homology
[Close]
BLAST of Lsi05G008130 vs. ExPASy TrEMBL
Match: A0A1S4E0M0 (uncharacterized protein LOC103495739 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495739 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.5e-44
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Lsi05G008130 vs. ExPASy TrEMBL
Match: A0A1S3C1F5 (uncharacterized protein LOC103495739 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495739 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.5e-44
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Lsi05G008130 vs. ExPASy TrEMBL
Match: A0A1S3C208 (uncharacterized protein LOC103495739 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103495739 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.5e-44
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Lsi05G008130 vs. ExPASy TrEMBL
Match: A0A0A0KVN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G099730 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.3e-43
Identity = 93/97 (95.88%), Postives = 93/97 (95.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTG-AAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLD 60
          MFGSRFSIFGTG AAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLD
Sbjct: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          CSLLIERL FEIIGL KLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 97

[Close]
BLAST of Lsi05G008130 vs. ExPASy TrEMBL
Match: A0A6J1L132 (uncharacterized protein LOC111499409 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499409 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.7e-40
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGSRFSIFG GAAA+KVE+S KSE  PG +LRSDKDVYRPGDPVVVTIEICSSVAQLDC
Sbjct: 1  MFGSRFSIFGIGAAAEKVEESVKSEVLPGFELRSDKDVYRPGDPVVVTIEICSSVAQLDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERL FEIIGL+KLDAQWFSTQKPIPGS+QRRG
Sbjct: 61 SLLIERLRFEIIGLRKLDAQWFSTQKPIPGSRQRRG 96

[Close]
BLAST of Lsi05G008130 vs. NCBI nr
Match: XP_008455604.1 (PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo] >XP_016901787.1 PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Lsi05G008130 vs. NCBI nr
Match: XP_008455607.1 (PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Lsi05G008130 vs. NCBI nr
Match: XP_008455605.1 (PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDC
Sbjct: 1  MFGSKFSIFGTGTAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Lsi05G008130 vs. NCBI nr
Match: XP_038904898.1 (uncharacterized protein LOC120091119 isoform X1 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGSRFSIFGTGA+ADKVE SAKSE FPGLKLRSDKDVYRPGDPVVVTIEICSSVAQ DC
Sbjct: 1  MFGSRFSIFGTGASADKVENSAKSEVFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQFDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Lsi05G008130 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0 

Query: 1  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDC 60
          MFGSRFSIFGTGA+ADKVE SAKSE FPGLKLRSDKDVYRPGDPVVVTIEICSSVAQ DC
Sbjct: 1  MFGSRFSIFGTGASADKVENSAKSEVFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQFDC 60

Query: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 97
          SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 SLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of Lsi05G008130 vs. TAIR 10
Match: AT1G50120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-21
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 0 

Query: 1   MFGSRFSIFGTGAAA---DKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQ 60
           M  SRFS  G G+++   D V  S  S+  P L +++DKDVYRPGD + VTIE+ +S   
Sbjct: 1   MLSSRFSFLGIGSSSEVNDSVGVSG-SKIKPSLSVQTDKDVYRPGDSIFVTIEVANSHDN 60

Query: 61  L-DCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRGSKSLL 102
             + S+L+E+LSFE+ GL+KLD QWFSTQKP PGSK RRG    L
Sbjct: 61  ASNPSILVEKLSFEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFL 104

The following BLAST results are available for this feature:
BLAST of Lsi05G008130 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G008130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E0M06.5e-4495.83uncharacterized protein LOC103495739 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C1F56.5e-4495.83uncharacterized protein LOC103495739 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3C2086.5e-4495.83uncharacterized protein LOC103495739 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0KVN29.3e-4395.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G099730 PE=4 SV=1[more]
A0A6J1L1325.7e-4088.54uncharacterized protein LOC111499409 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Lsi05G008130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455604.11.3e-4395.83PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo] >XP_01... [more]
XP_008455607.11.3e-4395.83PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo][more]
XP_008455605.11.3e-4395.83PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo][more]
XP_038904898.12.3e-4395.83uncharacterized protein LOC120091119 isoform X1 [Benincasa hispida][more]
XP_038904899.12.3e-4395.83uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida][more]
BLAST of Lsi05G008130 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G50120.12.6e-2152.38FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014848Reduced growth phenotype protein 1PANTHERPTHR12507REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATEDcoord: 22..101
NoneNo IPR availablePANTHERPTHR12507:SF4BNAANNG31920D PROTEINcoord: 22..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G008130.1Lsi05G008130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane