Lsi05G007970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G007970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	SpoU_methylase domain-containing protein
Location	chr05: 11666934 .. 11676650 (+)
RNA-Seq Expression	Lsi05G007970
Synteny	Lsi05G007970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACAAACTCATTCCATCACAAAACTAAAAACTAAAAAAAAAATCAATCTGTGCCGATTCAAGGAGATAGAAGAATGCAATGCTCCTGCGTTTCCTGGTCCTCAAATCTGAAACTCGGACCTTCCTTTTCCAAATTGAAGCTATCATCAATTAACCAAGCAGAGACCACCGATTTTGCTGGAAGAATTTCTCTTCCTTCTCACGTGAAAGCCATCACCAGCACCTCCAACCCTTTCGTTAAGCACTGCGTCAAACTTCGCTTCAGTTCCTCTTATCGCCACTTCCATGGCTCCGTCATTGTCGTCGGAGCTACTCCAATAAGGTTCTCTCTTAATCAGTTACTTTGCCCTCAATTTTTCTGGGTTCTGTTCATGATTGTGTTCCTGATTGAAAAATTAAATTAGTCCACGCGGGGTTTTATTTTTTGAATTTTTTTGTCGTTAAATTTCACTAGCTCTCGAGCAAGGGGCTCTAAACCCTTGAATTTCTTTTGCAAATCAACCATATGGGTTAATAAATTCTCTAACATGGGTTATTAGTACTTCGTCTCTCATGCTATTTTTCGTCCATACTATTCTAATTGCCCATTTCAGTTTTGTGTCCGGTGCTTTTTTGGTGAATGTTTTGAAGAATTGAGTTCTTGGAATCAAATCCTGTGTAATAGCAAGTTTGTGACTTAATATTTTTGAAGCACCCTTAAGCTTTATCTAGAGTTGTATTTGATTGTGACTGTTCTCTAATTGAACTATGAAGTACTTTCTGTTTTTTGAACTTTGGAAACTCGCTGCTGATTTGTAAAATGATAAATTGTTGGAGCCATGTAAAATTTGTGCTTTCCTGCAAGAATTTCAGCATAAATTCTGTCTTCTAAAGTCATATTTTGTCCTTGTGGTTACTCCGTTTAATCTATAGGTTACTCTCTTCATGGTTGGCAAGGAAGAAAATCCTATTTCTCTGTTGTGTGGATGCTTCCACATATTGCAGTTCATTTCTAGCTAGAATTGTTGAAAGTTTATGTGTGGTCTACTGGTGGTCGTATCTACTTCAATCATTTCGTGATAGATGTAATTTGTATATTCTAGTTCACTGTTTTTGGACCATGACAAACTTTATAAAATGGTGTTCCCATGAGAAAATTTACTATTACTTACATGAGATTAGATCTCCCTCCCCTTAGGAGTTCTAATTATGTATTTTATCAGGTCATCTTTTGTGGTAAAATGTTTTGCTCAACTTCATTTGGTTTGTATGCACTGACATCTAATTTAAGTCTCTTACAGGGAAATTTGCAAGTTTCAAGAGTCTCTGCATGGGATAGCTTGTATATTGGAGTGCCTACTTCTGCTAGATGACGTTGAGGTTCCTGAAGGACTAATTGATATATCTGTTCGTATTGTGCGGGTGAGCCCAACTGTGATGAAAAAGCTTTCTGGCATGCAATCAACAGAATCTATTGATGCAATTGCCCTCATGAGAATACCTGCCAGTTTTTGTAGTGTAGATGGCAATGAGAAAGAAGTAGATTTTAAAAGATGTTTTCCATCTCCGCATCGAATATTAGTCCTTGAGGGAATCCAGGTATTCTTTCATTTGGAGTGGAGCGAAGTCTTGTAATTTGCTGCATCTAATTTTCCTGTCTTTAAGTTGTTGCAAAATACTATATAGTTATCATTTCCCCCACTTCTCTCCATCCTCACTACTAAGACGATTTTTCTACCTTGTGCTGCCACTAGTCCACTGTGGTATGTCACTGAACACATTTACATCGTAATAGTTTTTCTGGACTCACCTATAAAGAGTGAATGAGTGGTCGTCCTCTTAACTTATGGTGCTTTGATGATGACCTTTATGCTTAGCGTTTGATGTTATAAAGTACTCACCTATATCCATTAGTTAATATGAGATGTACAAGTTCATCTTTGCTTGTTGCAGGACCCAGGCAATCTTGGTACATTAATCAGGTCCGCTTTGGCCTTCAAATGGGTAAGGAAAAATTCCACAAATTATTATTATCCTTCATTCTTTGACCTTTTCCCCCTGAACATGGTGAGGGCAACCAGGCAGGTTATATCACATAGTGTTCTTTGGCTTTCTATTTTCATTAAATTTCTCCATGGAGAAATTCGTCTGTCATGTGTTAATGTATTTTATTTTATTTGGATTTGATTTAATTTTTTTATTATTTTTTTACTTTTGTTTCTGGAAAATACGTTCTATAGATTTAGATCTTCTCAATAAGTTTGAAGAACCCTTCTTTGAACTCCAAAATCCAAATGTCAATGAGTGCTGATAGAATACTTCACCTTTCTAGTGTGAAATTGTGATAGGCCTCCAATTGTAAAAGTGATGTAAGGATAAGATGAGGAGTAACAAAACGTGACAAAATGTTTGTTATGTGTTGGCCCTCTAGGAATATTGTTAGTTAGGGGACTTGCGGTGTGGAGGCCTTTTATAGACCCCTTTGCTGATAGGGGAGGGGATCTATTTGGCTATCATTTGTATTTGGGTACTCTTATGAGAATTGGGAGAGATAAGGGAGCTCTTGAATCTTCCCCACTACTTTTGATAAATAAGATTGATGCTAAGGCCTATCAATTTTGGTATCAAAGCATTCGTTTCTAGAATGGTAGGAAAAATGGAAGGAGTTATAATGTCGGAAGAGAAAATGATGGAGATAGGTGTAAGTAGTTGGAACTTGAGTGCAAGATGGATTCTAGATTCTTTGAAGCTGACGAGAGTTGGGTGGTTGCAGAGGAGAAGGTGGATCTCCAATTTACACTGTTATGGGAGAAGATGAAGGCGATCATGAATCGAATGGAAGGTTGGATGAATTTGAAGAGACGGTCAACTTCTTCAGAGAGGATTGATAAGTGGAAAAAAGTGATGGAATAAGAATCGATTGAGCTTGCGAGTGAAGGACAAGAGCAAAGTTCTTTGGATAAGGAAGGAATTCATGCTCATAGTAATCATGAGGTTCCTCTATTTAATATGCGATTGAGTAAATTATTGGTACCCATTTTTAAGGGGGAAGAGGAAGAAAACGCAGATGGATTGCTACTACGCATGGAGAGGTATTTTGTTGTAAATTGATTGTCAAAGAGAGACAAGTTGGATGCGACAGTGTTGTGCTTGCGTTGCATTGTACGAGTAGGAAGAGGATCAAAACTCGGTAGGTAGTTTGGATGAGTTTTGAAAGCTTTTGTTGGAGCAATTTTGACTGTCTGGTCATGGAGATAAGTACGCACGGTTGATGAAACTGCAACAAGAATTCATTGTACACGAGTATTGCTGGAGATTTGAGTAGTAATTGGCCGGTTGGATATTTGTTAGCGATGGAGTCTTGGAGAGTAAGTTTGTTTGTGGGCTAAGCGAAGAAATCCAAAGTGAAATGAAAATGAAAACTAATGGGCTTGAAGGCCAAGATGATGATCGCCCAATTAAATGAGGATGACCATCTTGGTTCAACAAAAAAAGAACAAAAATACGAGTGTTACTAGCCCAAAAGTGAAAAGTGGATGGCGTATTCTAGGTCAGGTTCAAGTGGGAGTAGCTGGTCACCATCAAGCATGATTATTAGCAGCCCTAATCAAGGAATGGGGGGTTTCCACATCTTTAAGGCCGACGCGTGATTTCGTTACAAAAGCGAGGGCCACAACATTGGGTTTTGTTAGGCTTGTGGTTGTGTTTTGTGCGGCTTTTGCTCTAATTTCTTGGTTTCGTCTCCCTCTGTTTTGGGGGCTTCCTTTCGGATGTGTGTTTTTTGTGTTGTCCTGTGTTACGGTGTTGTGGGGTGGGCTAGTCTATTTTTGGCTAGTTTCTTTGTGGTGTTTGGGCCGTTAGGGGTTTGTGGTTTGGTTCCTTGTGTGTTTGGTTTGTGTGATCTGGCCTCAGGCTGTGGAGCTCTCCTTGTTTAATATATTATCTTTTCCCAACAAAAATAAAATAAAATTGGGGTGGTCTATGTAGGGCCAAAAGGATCTTGCCTCCTACCATGACCATTGCTATATCCTCCCATAGCATTTACCTCACGAAGTGTCCCTTGATGGACATGAGGGCAAACATCAGCAATATGCCCTGTCATTGAACATAGGGGTGAGCAAACAAAACCAAAAATCAGACCAAGCCGACTGAAACGGACCAAACCGACATCGGTCGACCAATTTAGTCAAAGATTCAATCGGAGTCGGTTTTCTGCAAATAAAAAAAGCGAACGTTGCCAGTCGGAGTGGTCGGAAAAGCATAATTCCAACCGACCGACCAAATTTTTTAATTATTGAGTGTGATATTTTAAAGCAATCAGCCCTTAATATACGTGTAATCCACCTTGATTCACGTAAGGTGGTTTTACTTTTTGTAAAAATAATTATTACTTTTTCTAAAAGTAATTATTACTTCTCTTTTCTCTCCCCCCATGTACATTTCTTATCCTTTTCATTTTATTTATTTATTTTATTTCCCTTTTGAAAATTAAGTGTTAGTGCAACTTCTCTTCTCTTTCCAATTTCCTTTTTAATTTTATTTATTTTATTTCTCTCTCCTAAATTAAGTGTTCTATCTTCTCTCTATCTCATTTCCTTCTTTCTCAAGTGTTTGGTTTTCTTTGTATTTTTTCTTCTTCTTTTTCATCTCCTTATTTTCTTCATCTCCTTTTAGTTTTCTTCTTATCTATTGTTCTACCTTTCTTCCTCCTTGTTCTTTTATTCTTCCTTTCAGTCAACCCTTTCATTTCTCATTTTCTTTGCCGGAGACTAAAAACCGACAAAATCGCCTAACTGACCAGTCGGCTGGTCGGCCGGTGTGGTTGTCTTCTTCGAAACCGATAAAACGCTAATAGACCACTTTTCGGTGTCACTGCCGAAAGAACCAATAAAAAATAATTTATAATACCAAATCCTACTACACTACTACTATGATGACGTAGCAACAGTAGTAAGTTCGGGTCGATCCGCAGGGAAGCACGAAATATGTTTCGTTAAGCTAATTCTCTTGTTACAACGGTAAATTTGGGGGCGGGGGTTGTGATAGGGATTGCATGAAAGTAAAGGCAGGAATGTAAAAGCAGCGGGTAAATGTAACTTAGGATTGGAAAATTCTAGTTTCGAGAGCAAGAGGGGATCCTATGCAATTTCGATCATCGACCTTTGATGTATGCACGACGACGCTACAAACAGTTGAAATATTCGATTGAACATGCATTCGATTCATGTATGCACAACGAATTACTCAGCCTAACCAAAATCAATGACGCTACAGATAGCCGAAATATTCGATTAAACCGAGAAAGCACCCTAATTATTAATTAATACTTAATCAAATTAGATGCTCAATTAACTGGGTTCGATAGCGTCCATAGAAATCTCACATCTACTCTAATCAATTATTAATTAAACTAAATGGTTTTAGTCCTATTGGGTTTGATAGCGTCCATATAGAATTAAACCATTTGCATTAGGATTAAAGGTTCCATTGTGTGATTAATTAATTTGGTAGCCTAATTGATTAACCAAATTATCTTTGAACCTAGTTAAAACATGCATTCTAGGTTAGCCATAAAATGCTTGATTAACTATTTGTTACTTAGGGTGATTTAAGCCAGACGAAGAACCAAAGACATCAAACAAGTCTAAATCAATTAACGAGGGTGACATACATCTATAAAGAAATAGTCATTCACAAACATGCATCTAGAGATTCACGAAGATTCAAAGAAGACAAATAGATATGCATTCAATTCAATCACCAAAAATCTCAAGAAAATTACATAGGGTTCTTGCTCCCAAAACTAGAGAAATCCTTACCTCAACATCTCATGGACAAGAAGAAGAGGGGGAGCTCCAATCCATGATTACAACCCAAAAGAATGTAAAAATCTAACCTAAAAGTGCTGAAAAATAAAGGGAGAAGAAGAAATTTAAGGTTCAATCCGCCTCCATCAAAACCAACTGAAAAACCCTAAAAGTGAAGAGGGATATTTATAAAATCGCGATCGCACTGTGGCGCCAAGCCCTAAATTGCCTTCTATCTGTAGGGCAAAGCCACAACATCGGGGTGGCACTGCGGTGGTGTGCCTCTGATGCGCGTGTTCTTTTGTTTGCCCAAATTCGGAGAGCTGGCGTCACGGTGCTGCTGCGTATCCATGGCTTCTGGAAAAAAAAACGCAGTGCATGGTGCCGACCTAGCGCAGTTGTGCTAGCCTCTTAGGGAAAAATGGTCTTTTCACGTCCTTTGAAGCCTCAAGTCCTCGGTATCACTCCCAATAACTCCAAATCCACCTTGAATGGCCCGTAATGCTCCAAAATGCATGATATGCTCGAGAATCTACAAAATAGACATTTAAATACATTATACCTAACAAACAAGTGAGATTAGAGACATATAAATAGTTCTTTTTGAGAGCTATCAAATGCCGACTGATAGTAATTGATGTGTCGGTGGTCGGCGGCGATTTTAGCCCAAAACCGATGCTAACCGACCGATAATCACCCTTAATTGAATAGACTCCACACACTTTGGCCGGTTGAGCTCTATCCAATGCCACTTGTTTTATCAAAGAAGCCAAGTTAGATATTTGAGTACGTGATTCATTGACCTCGGCATTAGATGTGATGTTCCTTGGAGCTCTCGTCCTAAATTGTTGGGAATTGTTCGCCATCGTATAGATAAGCATTCTAGCTTCTGAGGGAGTCTTATTCACTAGTGCATAATTGATGGTGCTTCTGTCATGTGGTAACAACCCTTCATAGAAATATTAGATCAATAGTTGGTCAAAAATTTGGTGATGGGGAAAACTAGCACAAATTCTCTTAAACCTTTCTCAATATCCACAAAGTGTTTCCCCTGAGATCTGGGTGATGCCATAGATCTCCTTCCTTATACTAGCGTGGAGGTTGAGAAAAAACTTTTCTAGAAACTGCTTTTCCTGGTCGGTCCAAGTTGTGATGCTCCCCAATGGTAAATAATAGAGCCAGTCCTTTGCATCGTCCTTCAAGAAAAACGGGAAGGCTCTCATATTCAACTATTCTTCAATGACTCCATGGGGCCTCATATCGTCGCACACGATGTGAAATTCTTTCAAGTGTTTGTGTGGGGTTGTCTCCTGCACGACCATGAAAACTAGGCAGTAAATGAACTAATCTAGGTTTAAACTCAAATATATTTGTCGTTTGAGGGTATGTGATGCACAACGGCTGTTGAGTCGTGTCAGGAGCTGCTAGATCCCTCAGGGTATGCTCGAGTATGCTATAATTGTCTATTCTTTTTCCACCAACTCTTCTTGTTGTGTGTCTTCAATACGGATTTGTTTGTTTTGGGCCACCTGTGCTTTTGCCTCCCTCCTGAGTCTCCTTTTCTCTCTGTCAATCTCTGCAACAACATCAAAAGAAATCGTAAGAACGTACAAGAAATCATAAACCTTTTAATTGAGAAATTACTAGGTTTCCCGGCAACAATGCCAAATAAATTCCGTGCCTACTTAAATTTGTAATATGAGTAGTACAGGTCGATCCACAGAGAACTGATGAGTTTCTCAGATAGAATGCTTAAAGTCCCGAAGTAATCGGAGGAAAAGGGGGGGGGGGGTGATTGATTATGCTTATGAATTTAGAAGTGCTTTGAATGTAAAAGTTGTTGAAAAGTCTAACTGTAGACAATTGTGAACGATTGAATGTTGAGAAAATACTGTTGATTAAAATGCCTGGCTCAGGGCTTTTTGAGGTTCCCCAAATTGTTTACTTGATCATCGAATCGTGAGACTAATTCCTATTTCTTGTCTAAGCCTAGCCAATATGTTTAATAATGCTAAACGATGTCCCAAGTACCTAATTAGTCAATATGATTAGATGAAACACATGCTAAACACTTGAGCTAACCGCATTAAGATTAATGGATTGTGCTAGGACGAATTTCCAATAGGTAATGCCTAATTGATCATCCAATATGATTCTCCTCTTGGTTAATTAATCAATGCTAATTGGATGGTTGTCGAACAATCTACAAGTTAATTTAACCTTTTGCTACTTTGTGATTTAGGGATTTATCAATCATGGATTAAGTTTAAATCTATAGTGATCGATCATATAAACTTCACCAGTTTGTCAGACAATCTCAAGAAAATACAATCATGAAGATTTTTAGCAAGATGAAAATCCGAAGACAAGATCAAAATTAGATGAATTGAGCAAAAATCTCACAAGTTCACATCAATGGGGAAAAATCGCTAAAACCCAAGCTAGTACTTACATATGTAGCCTATAATCATCTTCATAATCAATGGAGAATACAAAGAGTGCATTAAAATACAAGCCAAATTGAGAAAGAACAGAAGGTGAAATATTAGTGGGAGAATCGAGGAAATTAGAATATGATGACCCAGGCAGCTAAAAATGTATTTTAATTGTTGATGGTGCTGCTCGCAGCACTGCATCCCTATGGTCTAGTAATTGAAGCATTGCACACAGTACTGCAGCGCGCGTGTAGTTATCCGGTTTGCGATGGCATTGCAGTGTCATAGGATAGCGCTGCAGCGTTTTCTTCAGATGCATCCACTGTAAAGAGCGCCGCGGGGCACTGCCACGCTCATGCCTGGCGTTGCTTATGTTTATGGCGCCGCACGCAAGTGCTCAATGGCGCTACAGCACCAGCCCTCAAGGGTATTTTTGTAATTCTTCCCTTCTTTGTCCGATATATGCTTTAAGGCTCCCTTTTGGTCCATTTAAGCCCGATTTTTTCCCTATGGGTCCATTCTACCTTTTTTACGCCTGAGACCTATAAAATCATGAAATAAACATATAAAATCAAAGAACGAGTCTAAATTAAGTTTAGTGAGATAGCACGTTTTAGGTGCAATCAAGAAGCTCTTGAATCTTCTCCATTGGTGTTGATAAAAAAGATTAAGGCCAAGGCCTATCAGATTGCTGATAGGATTAGGTATGAGATATTATGTTTAAGAATGTGATCTTTTCTTAACTATATGATGAACCATTGCTGGTGTGTTTGCTGAAGTAATAGATCTCATATTCTTTTTTATGCATCCTTTTCCTATGGTGTGTTGTTTGGATAAAATCTTGAAACCTTTGAGCTTGTATCGGTGTGTTCTAAAATTTGTTATTAGGGTGTATCTTGGCTATTGTTTCGATTTTATATTCCTTATTAAAGAATTTTACTTTATTATAAAAGATAGATTCAAGAACTTTTAGAACTCCATTTTCTCACAAGCTTTTACATCCTCTGGTATATATTCGGTTATGTCCAACAGAATGGTGTTTTCCTGCTTCCTGGGTGTTGTGATCCATTCAACGAGAAGGCACTCCGAGCCTCACGAGGAGCATCTTTTCAGCTTCCAATAGTCTCTGGCACTTGGAATCATCTTGAGTTTCTAAAAAATGAATTCCAAATGAAAATGCTGGCTGGCCATCCCGAAAGCAATGAACCGAAACCTGTATCTGTCCTTTCGCAACAGTTTGCAAATTCTTTGAAAGATTTTCCATTGTGCTTGGTTTTGGGTTGTGAAGGGAGTGGTCTGTCTGAGAAATCCTGGCAGGTTTGTGAGCTTTTGAGTATTCCAATGGCGGGTGGTTTCGAGTCCCTCAATGTCTCAGTTGCAGGAGGAATTTTCTTGTACATGCTACAGGCTGAAAACCATAAACAAATTTGATGTTTTTCTTATTTGATTAGATTCTTAGAGTGATGGATAGGAAGGACATTAGTGTTATTCTTGC

mRNA sequence

ATTACAAACTCATTCCATCACAAAACTAAAAACTAAAAAAAAAATCAATCTGTGCCGATTCAAGGAGATAGAAGAATGCAATGCTCCTGCGTTTCCTGGTCCTCAAATCTGAAACTCGGACCTTCCTTTTCCAAATTGAAGCTATCATCAATTAACCAAGCAGAGACCACCGATTTTGCTGGAAGAATTTCTCTTCCTTCTCACGTGAAAGCCATCACCAGCACCTCCAACCCTTTCGTTAAGCACTGCGTCAAACTTCGCTTCAGTTCCTCTTATCGCCACTTCCATGGCTCCGTCATTGTCGTCGGAGCTACTCCAATAAGGGAAATTTGCAAGTTTCAAGAGTCTCTGCATGGGATAGCTTGTATATTGGAGTGCCTACTTCTGCTAGATGACGTTGAGGTTCCTGAAGGACTAATTGATATATCTGTTCGTATTGTGCGGGTGAGCCCAACTGTGATGAAAAAGCTTTCTGGCATGCAATCAACAGAATCTATTGATGCAATTGCCCTCATGAGAATACCTGCCAGTTTTTGTAGTGTAGATGGCAATGAGAAAGAAGTAGATTTTAAAAGATGTTTTCCATCTCCGCATCGAATATTAGTCCTTGAGGGAATCCAGTTATCATTTCCCCCACTTCTCTCCATCCTCACTACTAAGACGATTTTTCTACCTTGTGCTGCCACTAGTCCACTGTGGTATGTCACTGAACACATTTACATCGACCCAGGCAATCTTGGTACATTAATCAGGTCCGCTTTGGCCTTCAAATGGAATGGTGTTTTCCTGCTTCCTGGGTGTTGTGATCCATTCAACGAGAAGGCACTCCGAGCCTCACGAGGAGCATCTTTTCAGCTTCCAATAGTCTCTGGCACTTGGAATCATCTTGAGTTTCTAAAAAATGAATTCCAAATGAAAATGCTGGCTGGCCATCCCGAAAGCAATGAACCGAAACCTGTATCTGTCCTTTCGCAACAGTTTGCAAATTCTTTGAAAGATTTTCCATTGTGCTTGGTTTTGGGTTGTGAAGGGAGTGGTCTGTCTGAGAAATCCTGGCAGGTTTGTGAGCTTTTGAGTATTCCAATGGCGGGTGGTTTCGAGTCCCTCAATGTCTCAGTTGCAGGAGGAATTTTCTTGTACATGCTACAGGCTGAAAACCATAAACAAATTTGATGTTTTTCTTATTTGATTAGATTCTTAGAGTGATGGATAGGAAGGACATTAGTGTTATTCTTGC

Coding sequence (CDS)

ATGCAATGCTCCTGCGTTTCCTGGTCCTCAAATCTGAAACTCGGACCTTCCTTTTCCAAATTGAAGCTATCATCAATTAACCAAGCAGAGACCACCGATTTTGCTGGAAGAATTTCTCTTCCTTCTCACGTGAAAGCCATCACCAGCACCTCCAACCCTTTCGTTAAGCACTGCGTCAAACTTCGCTTCAGTTCCTCTTATCGCCACTTCCATGGCTCCGTCATTGTCGTCGGAGCTACTCCAATAAGGGAAATTTGCAAGTTTCAAGAGTCTCTGCATGGGATAGCTTGTATATTGGAGTGCCTACTTCTGCTAGATGACGTTGAGGTTCCTGAAGGACTAATTGATATATCTGTTCGTATTGTGCGGGTGAGCCCAACTGTGATGAAAAAGCTTTCTGGCATGCAATCAACAGAATCTATTGATGCAATTGCCCTCATGAGAATACCTGCCAGTTTTTGTAGTGTAGATGGCAATGAGAAAGAAGTAGATTTTAAAAGATGTTTTCCATCTCCGCATCGAATATTAGTCCTTGAGGGAATCCAGTTATCATTTCCCCCACTTCTCTCCATCCTCACTACTAAGACGATTTTTCTACCTTGTGCTGCCACTAGTCCACTGTGGTATGTCACTGAACACATTTACATCGACCCAGGCAATCTTGGTACATTAATCAGGTCCGCTTTGGCCTTCAAATGGAATGGTGTTTTCCTGCTTCCTGGGTGTTGTGATCCATTCAACGAGAAGGCACTCCGAGCCTCACGAGGAGCATCTTTTCAGCTTCCAATAGTCTCTGGCACTTGGAATCATCTTGAGTTTCTAAAAAATGAATTCCAAATGAAAATGCTGGCTGGCCATCCCGAAAGCAATGAACCGAAACCTGTATCTGTCCTTTCGCAACAGTTTGCAAATTCTTTGAAAGATTTTCCATTGTGCTTGGTTTTGGGTTGTGAAGGGAGTGGTCTGTCTGAGAAATCCTGGCAGGTTTGTGAGCTTTTGAGTATTCCAATGGCGGGTGGTTTCGAGTCCCTCAATGTCTCAGTTGCAGGAGGAATTTTCTTGTACATGCTACAGGCTGAAAACCATAAACAAATTTGA

Protein sequence

MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVKLRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVRIVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEGIQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQQFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAENHKQI

Homology

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BLAST of Lsi05G007970 vs. ExPASy Swiss-Prot
Match: P94538 (Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 168) OX=224308 GN=ysgA PE=3 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-13
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 0


Query: 217 DPGNLGTLIRSALAFKWNGVFLLPGCCDPFNEKALRASRGASFQLPIVSGTW-NHLEFLK 276
           DPGNLGT+IR+A A   + V L  G  D FN K LR+++G+ F +P+V     ++++ LK
Sbjct: 114 DPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVRRNLPSYVDELK 173

Query: 277 NEFQMKMLAGHPESNEPKPVSVLSQQFANSLKDFPLCLVLGCEGSGLSEKSWQVCEL-LS 336
            E  +K+     ++  P      S+ FA         L++G EG+G+     +  +L L 
Sbjct: 174 AE-GVKVYGTALQNGAPYQEIPQSESFA---------LIVGNEGAGVDAALLEKTDLNLY 233

Query: 337 IPMAGGFESLNVSVAGGIFLYMLQ 359
           +P+ G  ESLNV+VA  I +Y L+
Sbjct: 234 VPLYGQAESLNVAVAAAILVYHLR 247

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BLAST of Lsi05G007970 vs. ExPASy Swiss-Prot
Match: Q9VW14 (rRNA methyltransferase 3, mitochondrial OS=Drosophila melanogaster OX=7227 GN=CG14100 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.1e-12
Identity = 51/164 (31.10%), Postives = 86/164 (52.44%), Query Frame = 0


Query: 206 PLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLPGCCDPFNEKALRASRGASFQLPIVS 265
           P+  V ++I  +P NLG++IR+  A   + V +  GCCDP+  KALR   G  F++PI  
Sbjct: 235 PITVVCDNIR-EPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRD 294

Query: 266 G-TWNHLEF-LKNEFQMKMLAGHPESNEPKPVSVLSQQFANSLKDFPL--CLVLGCEGSG 325
             TW+ L   +  E          E+N+ K  +  +  +A+ +K       L++G E  G
Sbjct: 295 DVTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYAD-IKGLGAHNLLIIGGESHG 354

Query: 326 LSEKSWQVCELLS-------IPMAGGFESLNVSVAGGIFLYMLQ 359
           +SE++++   L+        IP+A G +SLNV+ A  + L+ L+
Sbjct: 355 VSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELR 396

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BLAST of Lsi05G007970 vs. ExPASy Swiss-Prot
Match: P74261 (Uncharacterized tRNA/rRNA methyltransferase slr1673 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1673 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.1e-12
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 0


Query: 217 DPGNLGTLIRSALAFKWNGVFLLPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKN 276
           DPGNLGT++R+A A    G++L   C DP + K LR+S G+S  LP        L  L  
Sbjct: 130 DPGNLGTILRTAAATGVEGIWLTADCVDPTSPKVLRSSAGSSLLLP--QQQLQSLPPLLE 189

Query: 277 EFQ---MKMLAGHPESNEPKPVSVLSQQFANSLKDFPLCLVLGCEGSGLSEKSWQV-CEL 336
           +F    ++++A  P++ +    ++    F       P  ++ G EG GLS    ++    
Sbjct: 190 KFHTQGLQLIATVPQATQ----TLWEIDFQR-----PTIVIFGSEGQGLSAPVLELTTHQ 249

Query: 337 LSIPMAGGFESLNVSVAGGIFLY 356
           ++IP A   ESLNV++A G+ LY
Sbjct: 250 VAIPQAPQVESLNVAIAVGVMLY 261

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BLAST of Lsi05G007970 vs. ExPASy Swiss-Prot
Match: A0PV26 (Uncharacterized tRNA/rRNA methyltransferase MUL_4155 OS=Mycobacterium ulcerans (strain Agy99) OX=362242 GN=MUL_4155 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-11
Identity = 55/177 (31.07%), Postives = 78/177 (44.07%), Query Frame = 0


Query: 179 EGIQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFL 238
           +GI L  PP  +      +      T P   V      DP NLG ++RS  AF  +GV +
Sbjct: 134 QGIALQVPP-YNYAHPDDLLAAALDTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLI 193

Query: 239 LPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVL 298
                      A R S GA+ ++P+   T N    LK+     +     ++     +  L
Sbjct: 194 PQRRSASVTAVAWRTSAGAAARMPVARAT-NLTRALKDWADRGVRVVGLDAGGDTAIDDL 253

Query: 299 SQQFANSLKDFPLCLVLGCEGSGLSEKSWQVC-ELLSIPMAGGFESLNVSVAGGIFL 355
                      P+ +V+G EG GLS    Q C E++S+PMAG  ESLN SVA G+ L
Sbjct: 254 D-------GSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVVL 301

[Close]

BLAST of Lsi05G007970 vs. ExPASy Swiss-Prot
Match: B2HJ20 (Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) OX=216594 GN=MMAR_5079 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-11
Identity = 55/177 (31.07%), Postives = 78/177 (44.07%), Query Frame = 0


Query: 179 EGIQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFL 238
           +GI L  PP  +      +      T P   V      DP NLG ++RS  AF  +GV +
Sbjct: 134 QGIALQVPP-YNYAHPDDLLAAALDTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLI 193

Query: 239 LPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVL 298
                      A R S GA+ ++P+   T N    LK+     +     ++     +  L
Sbjct: 194 PQRRSASVTAVAWRTSAGAAARMPVARAT-NLTRALKDWADRGVRVVGLDAGGDTAIDDL 253

Query: 299 SQQFANSLKDFPLCLVLGCEGSGLSEKSWQVC-ELLSIPMAGGFESLNVSVAGGIFL 355
                      P+ +V+G EG GLS    Q C E++S+PMAG  ESLN SVA G+ L
Sbjct: 254 D-------GSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVVL 301

[Close]

BLAST of Lsi05G007970 vs. ExPASy TrEMBL
Match: A0A5D3DF85 (Putative tRNA/rRNA methyltransferase YsgA isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001150 PE=4 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 4.1e-164
Identity = 297/360 (82.50%), Postives = 307/360 (85.28%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSSN KLGPSF K KLSSINQAE  DF GRISLPSHVKAI+S SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRFSSSYRHFHGSV+VVGATPIREICKFQESLHGI C LE LLLLD+VEVPEGL++++VR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           IVRVS  VMKKLSG+QSTESIDAIALMRIP SFCSVDGNEK VDFKR FPSPHRILVLE 
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLER 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNGVFLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGVFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDPFNEKALRASRGASFQLPIVSGTWNHLE  K EF+MKMLAGHPESNEPKPVSVLSQ
Sbjct: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEVFKKEFKMKMLAGHPESNEPKPVSVLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE
Sbjct: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 326

[Close]

BLAST of Lsi05G007970 vs. ExPASy TrEMBL
Match: A0A1S3BNM2 (uncharacterized tRNA/rRNA methyltransferase YsgA isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491842 PE=4 SV=1)

HSP 1 Score: 587.4 bits (1513), Expect = 4.1e-164
Identity = 297/360 (82.50%), Postives = 307/360 (85.28%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSSN KLGPSF K KLSSINQAE  DF GRISLPSHVKAI+S SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRFSSSYRHFHGSV+VVGATPIREICKFQESLHGI C LE LLLLD+VEVPEGL++++VR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           IVRVS  VMKKLSG+QSTESIDAIALMRIP SFCSVDGNEK VDFKR FPSPHRILVLE 
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLER 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNGVFLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGVFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDPFNEKALRASRGASFQLPIVSGTWNHLE  K EF+MKMLAGHPESNEPKPVSVLSQ
Sbjct: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEVFKKEFKMKMLAGHPESNEPKPVSVLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE
Sbjct: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 326

[Close]

BLAST of Lsi05G007970 vs. ExPASy TrEMBL
Match: A0A6J1C7F0 (uncharacterized protein LOC111008099 OS=Momordica charantia OX=3673 GN=LOC111008099 PE=4 SV=1)

HSP 1 Score: 580.1 bits (1494), Expect = 6.5e-162
Identity = 296/365 (81.10%), Postives = 308/365 (84.38%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+ WS+NLKLGPS SK K+ SI  AET D AGRISLPSHVKAITSTSNPFVKHCVK
Sbjct: 1   MQCSCIFWSTNLKLGPSISKSKV-SIAGAETIDIAGRISLPSHVKAITSTSNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRFSSSYRHFHGSV+VVGATPIREIC+FQE+LHG    LECLLLLD+V+VPEGL+D+SVR
Sbjct: 61  LRFSSSYRHFHGSVLVVGATPIREICRFQETLHGTTSTLECLLLLDEVDVPEGLVDVSVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           IVRVSPTVMKKLSGMQSTESIDAIALMRIPASF SV  NEKE +F+R FPS HRILVLEG
Sbjct: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFSSVYHNEKEANFRRWFPSLHRILVLEG 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNGVFLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGVFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDPFNEKALRASRGASFQLPIVSGTWNHLE LKNEFQMKMLAGHPESNEPKPVS LSQ
Sbjct: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEALKNEFQMKMLAGHPESNEPKPVSFLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQ E
Sbjct: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQNE 330

Query: 361 NHKQI 366
           NH  I
Sbjct: 361 NHTHI 330

[Close]

BLAST of Lsi05G007970 vs. ExPASy TrEMBL
Match: A0A6J1FNI0 (uncharacterized protein LOC111447061 OS=Cucurbita moschata OX=3662 GN=LOC111447061 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 2.4e-156
Identity = 287/363 (79.06%), Postives = 300/363 (82.64%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+S  SNLKLGPS SK KLSSI + E  D A RISLPSHVKAITSTSNPFVKHCVK
Sbjct: 1   MQCSCISLPSNLKLGPSISKFKLSSIPKVEAIDLAARISLPSHVKAITSTSNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRF+SSYRHFHGSV+VVGATPIREICKFQESL GI+C LECLLLLD+VE+PE L+D+SVR
Sbjct: 61  LRFTSSYRHFHGSVLVVGATPIREICKFQESLRGISCTLECLLLLDEVEIPEELVDVSVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           +VRVSPTVMKKLSGMQSTESIDAIALMRIP SF S+DGN K+   KR FPSPHRILVLEG
Sbjct: 121 VVRVSPTVMKKLSGMQSTESIDAIALMRIPDSFYSLDGNLKQAHCKRWFPSPHRILVLEG 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNGVFLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGVFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDPFNEKALRASRGASFQLPIVSGTWNHLE LK EFQMKMLAGHPESNE KPVSVLSQ
Sbjct: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEDLKTEFQMKMLAGHPESNELKPVSVLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QFANS KD PLCLVLG EGSGLSEK WQVCELLSIPMAGGFESLNVSVAGGIFLYMLQA 
Sbjct: 301 QFANSSKDIPLCLVLGSEGSGLSEKCWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAV 329

Query: 361 NHK 364
           N +
Sbjct: 361 NDR 329

[Close]

BLAST of Lsi05G007970 vs. ExPASy TrEMBL
Match: A0A6J1JVY6 (uncharacterized protein LOC111488367 OS=Cucurbita maxima OX=3661 GN=LOC111488367 PE=4 SV=1)

HSP 1 Score: 557.4 bits (1435), Expect = 4.5e-155
Identity = 286/365 (78.36%), Postives = 298/365 (81.64%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+S  SNLKLGPS SK KLSS  + E  D A RISLPSHVKAITSTSNPFVKHCVK
Sbjct: 1   MQCSCISLPSNLKLGPSISKFKLSSNLKVEAIDLAARISLPSHVKAITSTSNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRFSSSYRHFHGSV+VVGATPIREICKFQESL GI+C L CLLLLD+VEVPE L+D+SVR
Sbjct: 61  LRFSSSYRHFHGSVLVVGATPIREICKFQESLRGISCTLACLLLLDEVEVPEELVDVSVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           IVRVSPTVMKKLSGMQS ESIDAIALMRIP SFCS+DGN K+   K  FPSPHRILVL+G
Sbjct: 121 IVRVSPTVMKKLSGMQSIESIDAIALMRIPDSFCSLDGNLKQAHSKTWFPSPHRILVLDG 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNGVFLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGVFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDPFNEKALRASRGASFQLPIVSGTWNHLE LK +FQMKMLAGHPESNE KPVSVLSQ
Sbjct: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEALKTDFQMKMLAGHPESNELKPVSVLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QFANS KD  LCLVLG EGSGLSEKSWQVCELLSIPM GGFESLNVSVAGGIFLYMLQAE
Sbjct: 301 QFANSSKDISLCLVLGSEGSGLSEKSWQVCELLSIPMVGGFESLNVSVAGGIFLYMLQAE 331

Query: 361 NHKQI 366
           N + I
Sbjct: 361 NDRHI 331

[Close]

BLAST of Lsi05G007970 vs. NCBI nr
Match: XP_038904874.1 (uncharacterized tRNA/rRNA methyltransferase slr1673 [Benincasa hispida])

HSP 1 Score: 612.1 bits (1577), Expect = 3.2e-171
Identity = 306/365 (83.84%), Postives = 318/365 (87.12%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSCVSWSSNLKLGPSFSK KLSSINQAET DFA R+SLPSHVKAITSTSNPFVKHCVK
Sbjct: 1   MQCSCVSWSSNLKLGPSFSKSKLSSINQAETIDFAARVSLPSHVKAITSTSNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRFSSSYRH+HG+V+VVGATPIREICKFQESLHGI C LECLLLLDDVEVPEGL+D SVR
Sbjct: 61  LRFSSSYRHYHGTVLVVGATPIREICKFQESLHGITCTLECLLLLDDVEVPEGLVDKSVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           IVRVSPTVM+KLSGMQSTESIDAIALMRIPASFCSVDGNEK++DFKRCFPSPHRILVLE 
Sbjct: 121 IVRVSPTVMRKLSGMQSTESIDAIALMRIPASFCSVDGNEKDIDFKRCFPSPHRILVLER 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNGVFLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGVFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDP+NEKALRASRGASFQLPIVSGTWNHLE LKN+FQMKMLAGHPESNEPK VSVLSQ
Sbjct: 241 GCCDPYNEKALRASRGASFQLPIVSGTWNHLEVLKNKFQMKMLAGHPESNEPKRVSVLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QFANSLK+FPLCLVLGCEGSGLS KSW VCELLSIPMAGGFESLNVSVAGGIFLYMLQAE
Sbjct: 301 QFANSLKEFPLCLVLGCEGSGLSGKSWHVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 331

Query: 361 NHKQI 366
           N+  I
Sbjct: 361 NNSHI 331

[Close]

BLAST of Lsi05G007970 vs. NCBI nr
Match: XP_011650605.1 (uncharacterized protein LOC101218901 isoform X2 [Cucumis sativus] >KAE8650203.1 hypothetical protein Csa_010011 [Cucumis sativus])

HSP 1 Score: 590.1 bits (1520), Expect = 1.3e-164
Identity = 295/360 (81.94%), Postives = 307/360 (85.28%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSSN KL PSF K KLSSIN AE  DF GRI LPSHVKAITS SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLAPSFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRFSSSYRHFHGSV+VVGATPIREICKFQESLHG+ C LECLLLLD+VEVPEGL++++VR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           IVRVS  VMKKLSG+QSTESIDAIALMRIP SFCSVDGNEKEVDFKR FPSPHRILVLEG
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEG 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNG+FLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGIFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDPFNEKALRASRGASFQLPIVSGTWNHLE  K EF+MKMLAGHPESNEPKPVSVLSQ
Sbjct: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEVFKKEFEMKMLAGHPESNEPKPVSVLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QF+NSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE
Sbjct: 301 QFSNSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 326

[Close]

BLAST of Lsi05G007970 vs. NCBI nr
Match: XP_008450171.1 (PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA isoform X1 [Cucumis melo] >KAA0060378.1 putative tRNA/rRNA methyltransferase YsgA isoform X1 [Cucumis melo var. makuwa] >TYK22118.1 putative tRNA/rRNA methyltransferase YsgA isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 587.4 bits (1513), Expect = 8.4e-164
Identity = 297/360 (82.50%), Postives = 307/360 (85.28%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSSN KLGPSF K KLSSINQAE  DF GRISLPSHVKAI+S SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLGPSFHKSKLSSINQAEAIDFTGRISLPSHVKAISSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRFSSSYRHFHGSV+VVGATPIREICKFQESLHGI C LE LLLLD+VEVPEGL++++VR
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPIREICKFQESLHGITCTLEYLLLLDEVEVPEGLVNLTVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           IVRVS  VMKKLSG+QSTESIDAIALMRIP SFCSVDGNEK VDFKR FPSPHRILVLE 
Sbjct: 121 IVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKVVDFKRWFPSPHRILVLER 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNGVFLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGVFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDPFNEKALRASRGASFQLPIVSGTWNHLE  K EF+MKMLAGHPESNEPKPVSVLSQ
Sbjct: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEVFKKEFKMKMLAGHPESNEPKPVSVLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE
Sbjct: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 326

[Close]

BLAST of Lsi05G007970 vs. NCBI nr
Match: XP_031739071.1 (uncharacterized protein LOC101218901 isoform X1 [Cucumis sativus])

HSP 1 Score: 584.7 bits (1506), Expect = 5.4e-163
Identity = 295/363 (81.27%), Postives = 307/363 (84.57%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+SWSSN KL PSF K KLSSIN AE  DF GRI LPSHVKAITS SNPFVKHCVK
Sbjct: 1   MQCSCLSWSSNPKLAPSFPKSKLSSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPI---REICKFQESLHGIACILECLLLLDDVEVPEGLIDI 120
           LRFSSSYRHFHGSV+VVGATPI   REICKFQESLHG+ C LECLLLLD+VEVPEGL+++
Sbjct: 61  LRFSSSYRHFHGSVVVVGATPISLYREICKFQESLHGVTCTLECLLLLDEVEVPEGLVNL 120

Query: 121 SVRIVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILV 180
           +VRIVRVS  VMKKLSG+QSTESIDAIALMRIP SFCSVDGNEKEVDFKR FPSPHRILV
Sbjct: 121 TVRIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILV 180

Query: 181 LEGIQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVF 240
           LEGIQ                                  DPGNLGTLIRSALAFKWNG+F
Sbjct: 181 LEGIQ----------------------------------DPGNLGTLIRSALAFKWNGIF 240

Query: 241 LLPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSV 300
           LLPGCCDPFNEKALRASRGASFQLPIVSGTWNHLE  K EF+MKMLAGHPESNEPKPVSV
Sbjct: 241 LLPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEVFKKEFEMKMLAGHPESNEPKPVSV 300

Query: 301 LSQQFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYML 360
           LSQQF+NSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYML
Sbjct: 301 LSQQFSNSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYML 329

[Close]

BLAST of Lsi05G007970 vs. NCBI nr
Match: XP_022136373.1 (uncharacterized protein LOC111008099 [Momordica charantia])

HSP 1 Score: 580.1 bits (1494), Expect = 1.3e-161
Identity = 296/365 (81.10%), Postives = 308/365 (84.38%), Query Frame = 0


Query: 1   MQCSCVSWSSNLKLGPSFSKLKLSSINQAETTDFAGRISLPSHVKAITSTSNPFVKHCVK 60
           MQCSC+ WS+NLKLGPS SK K+ SI  AET D AGRISLPSHVKAITSTSNPFVKHCVK
Sbjct: 1   MQCSCIFWSTNLKLGPSISKSKV-SIAGAETIDIAGRISLPSHVKAITSTSNPFVKHCVK 60

Query: 61  LRFSSSYRHFHGSVIVVGATPIREICKFQESLHGIACILECLLLLDDVEVPEGLIDISVR 120
           LRFSSSYRHFHGSV+VVGATPIREIC+FQE+LHG    LECLLLLD+V+VPEGL+D+SVR
Sbjct: 61  LRFSSSYRHFHGSVLVVGATPIREICRFQETLHGTTSTLECLLLLDEVDVPEGLVDVSVR 120

Query: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFCSVDGNEKEVDFKRCFPSPHRILVLEG 180
           IVRVSPTVMKKLSGMQSTESIDAIALMRIPASF SV  NEKE +F+R FPS HRILVLEG
Sbjct: 121 IVRVSPTVMKKLSGMQSTESIDAIALMRIPASFSSVYHNEKEANFRRWFPSLHRILVLEG 180

Query: 181 IQLSFPPLLSILTTKTIFLPCAATSPLWYVTEHIYIDPGNLGTLIRSALAFKWNGVFLLP 240
           IQ                                  DPGNLGTLIRSALAFKWNGVFLLP
Sbjct: 181 IQ----------------------------------DPGNLGTLIRSALAFKWNGVFLLP 240

Query: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEFLKNEFQMKMLAGHPESNEPKPVSVLSQ 300
           GCCDPFNEKALRASRGASFQLPIVSGTWNHLE LKNEFQMKMLAGHPESNEPKPVS LSQ
Sbjct: 241 GCCDPFNEKALRASRGASFQLPIVSGTWNHLEALKNEFQMKMLAGHPESNEPKPVSFLSQ 300

Query: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQAE 360
           QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQ E
Sbjct: 301 QFANSLKDFPLCLVLGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVAGGIFLYMLQNE 330

Query: 361 NHKQI 366
           NH  I
Sbjct: 361 NHTHI 330

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BLAST of Lsi05G007970 vs. TAIR 10
Match: AT4G38020.1 (tRNA/rRNA methyltransferase (SpoU) family protein )

HSP 1 Score: 394.4 bits (1012), Expect = 9.7e-110
Identity = 200/327 (61.16%), Postives = 243/327 (74.31%), Query Frame = 0


Query: 35  AGRISLPSHVKAITSTSNPFVKHCVKLRFSSSYRHFHGSVIVVGATPIREICKFQESLHG 94
           A R+SLPSHV +ITST+NPFVKHC+KLR SSSYRH HGSV+VVG  PIRE+C FQ +  G
Sbjct: 57  ANRVSLPSHVNSITSTTNPFVKHCLKLRQSSSYRHAHGSVLVVGTIPIREVCMFQTNKQG 116

Query: 95  IACILECLLLLDDVEVPEGLIDISVRIVRVSPTVMKKLSGMQSTESIDAIALMRIPASFC 154
           +   +ECLLL ++ ++P+GL  +S+RIVRVS  VMKKLSG+QSTES++AIALMRIP+SF 
Sbjct: 117 MTTEIECLLLHEEAKIPQGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFT 176

Query: 155 SV-DGNEKEVDFKRCFPSPHRILVLEGIQLSFPPLLSILTTKTIFLPCAATSPLWYVTEH 214
            + D  +   D  + FPS HR+LVL+ IQ                               
Sbjct: 177 DLKDDKDIITDCNKWFPSAHRVLVLDSIQ------------------------------- 236

Query: 215 IYIDPGNLGTLIRSALAFKWNGVFLLPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEF 274
              DPGNLGTL+RSA+AF W+G FLLPGCCDP+N+KALRASRGASFQLPIVSG WNHL+ 
Sbjct: 237 ---DPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNWNHLKL 296

Query: 275 LKNEFQMKMLAGHP--ESNEPKPVSVLSQQFANSLKDFPLCLVLGCEGSGLSEKSWQVCE 334
           L+NEFQMK+LAGHP   + + KPVS LS +FA SL + PLCL+LG EG+GLSE++ +VC 
Sbjct: 297 LENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGLSEQARKVCV 349

Query: 335 LLSIPMAGGFESLNVSVAGGIFLYMLQ 359
           L+SIPMAG FESLNVSVAGGIFLYMLQ
Sbjct: 357 LVSIPMAGDFESLNVSVAGGIFLYMLQ 349

The following BLAST results are available for this feature:

BLAST of Lsi05G007970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P94538	4.8e-13	35.42	Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 16...	[more]
Q9VW14	9.1e-12	31.10	rRNA methyltransferase 3, mitochondrial OS=Drosophila melanogaster OX=7227 GN=CG...	[more]
P74261	9.1e-12	33.57	Uncharacterized tRNA/rRNA methyltransferase slr1673 OS=Synechocystis sp. (strain...	[more]
A0PV26	4.5e-11	31.07	Uncharacterized tRNA/rRNA methyltransferase MUL_4155 OS=Mycobacterium ulcerans (...	[more]
B2HJ20	4.5e-11	31.07	Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 OS=Mycobacterium marinum (...	[more]

BLAST of Lsi05G007970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DF85	4.1e-164	82.50	Putative tRNA/rRNA methyltransferase YsgA isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A1S3BNM2	4.1e-164	82.50	uncharacterized tRNA/rRNA methyltransferase YsgA isoform X1 OS=Cucumis melo OX=3...	[more]
A0A6J1C7F0	6.5e-162	81.10	uncharacterized protein LOC111008099 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1FNI0	2.4e-156	79.06	uncharacterized protein LOC111447061 OS=Cucurbita moschata OX=3662 GN=LOC1114470...	[more]
A0A6J1JVY6	4.5e-155	78.36	uncharacterized protein LOC111488367 OS=Cucurbita maxima OX=3661 GN=LOC111488367...	[more]

BLAST of Lsi05G007970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904874.1	3.2e-171	83.84	uncharacterized tRNA/rRNA methyltransferase slr1673 [Benincasa hispida]	[more]
XP_011650605.1	1.3e-164	81.94	uncharacterized protein LOC101218901 isoform X2 [Cucumis sativus] >KAE8650203.1 ...	[more]
XP_008450171.1	8.4e-164	82.50	PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA isoform X1 [Cucumis ...	[more]
XP_031739071.1	5.4e-163	81.27	uncharacterized protein LOC101218901 isoform X1 [Cucumis sativus]	[more]
XP_022136373.1	1.3e-161	81.10	uncharacterized protein LOC111008099 [Momordica charantia]	[more]

BLAST of Lsi05G007970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38020.1	9.7e-110	61.16	tRNA/rRNA methyltransferase (SpoU) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 46..150 e-value: 4.7E-10 score: 41.6
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 46..144
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 202..364 e-value: 7.4E-35 score: 122.1
IPR001537	tRNA/rRNA methyltransferase, SpoU type	PFAM	PF00588	SpoU_methylase	coord: 217..355 e-value: 6.8E-25 score: 87.9
None	No IPR available	PANTHER	PTHR43191	RRNA METHYLTRANSFERASE 3,	coord: 32..363
None	No IPR available	PANTHER	PTHR43191:SF2	RRNA METHYLTRANSFERASE 3, MITOCHONDRIAL	coord: 32..363
None	No IPR available	CDD	cd18095	SpoU-like_rRNA-MTase	coord: 217..357 e-value: 9.00568E-47 score: 154.121
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 216..358

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G007970.1	Lsi05G007970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008173	RNA methyltransferase activity