Lsi05G007400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G007400
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease H
Locationchr05: 10200507 .. 10204175 (-)
RNA-Seq ExpressionLsi05G007400
SyntenyLsi05G007400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCAAATGGCAAAAATCTTAGATTTGCTCGCTGCACAAAAAGGAAAAGCAGTGGCGGAGACTTCAGGTCCTCATAACGGTATTTCTGAGGTAGAAGATACATCAATATACCCTCCAGGATTCACACCACACGTATCACAACACCACGACGTATCGGTAGCACCTCCGCAACCAATCTTTTACACTCACGCAATGCCTACGGTACCGTTGGAAGTAGGGATAGCCCAAAACCCTGCCATTCCAATGCCCGGACAAGTTCAACCTTCGGTACAACTAAGGAGTCAGAAGAGCAATCCAAGTTATGTTTACGAGTATGATAATGACAGAGGAGAGGCAGAAAGAAGTGAATCAAGGGGAAAGTTGGATATTTTAGAGGAAATATTACGGCCCATTGAAGGAGCCAATGCATTTGGAAGCATAGATGCAACACAACTATGTTTAATCTCTAATGTTGTTATTCCTCCCAAATTGAAAATACCTGATTTTGAAAAATATGATGGAACATTCTGTCCAAGAAACCACCTAATTATGTATTGCAGAAAAATGGCCGCACACATTCAGGAAGAAAAACTCTTAATACATGGTTTTCAAGATAGTTTGACAGGCTCTAGTTCTCATTGGTACATGCAGCTAGATGCAACATACGTCAGAAAATGGAAGGATTTGGCGGATTTATTCCTTAAACAGTACAAACACAACTTAGATATGGCTCCAGTCGTTTAGATTTACAACGACTAGAGAATAAGAGTACTAAGAATTTCAAGGAATATGCACAAAGATGGAGGGAAATGGCTGCTCGAATTCAACCACCCTTGACAGATAAAGAAATGACAACTATGTTCATAAACACTCTCCGATCTCCCTATTATGATCGCATGATAGGAAATGCCTCTACAAATTTTTCAGACATTATTACCATCGAAGAAAGAATTGAGTATGGGGTGAAATATGGAAGAATTGTGGACACTATGTCAGAATCAAACCTGAAAAAAAGTATCATTCCAAAGAAAAAGGAAGGTAAAATCCACGAGGTCAGTTACAGTCAGAGAATGCCTTTAAGCAATTTAAAGGCAATACATTACCCAGTATCGAACAATGCATTTCAAACCCCCTATAATAATTCTTATGCAATCGGCCAAGGTCATCAAATGGTGCAGGGGCAAAGGAATTATTCTTCAGAGATCCAGAACCTCAACTCATCGAATGTTCAACGATTCGTTAGGAACAATTCCAGAAATTATGATCCCATTCCTGTGACTTACACTGAACTCCTTCCTCAACTTATCCAGAATAAACAACTTGTCTCGATACATATGGAACCTGTACTACCACCATATCCAAAATGGTATAAACCAAACGCACGTTGTGACTATCATTCGGGAGCGGTTGGGCATTCTACTGAAAATTGTTACACTCTCAAAGGAAAGGTACAAGATTTGATAAATTCGGGGTGGCTTAAATTCAAAAAAGCAGAAGAAGTACCAGATATCACCCAAAATCCACTACCTGATCATGGAAACCCTACAATAAACGCCATCCATATTCAATCCGAATGCGAGGGAGATGTCGATGTAGTGTACCAGTACTCAAAAGACAATTGTCTATCTTATAGTGAAATGTCGATTTGCTTGAACGAAACGGATATTTCATTCGATAAATGTGATTTCGGAAGGAGAGGCACCATCTAAAGTTCGATCAAGATAGAACCATTGGTGATCTTTTTCAAGGAACAACCTTCGAGTGTCCAAACCAGCTTGGCCATCTCCAAGCCTCTGACCATTCAAATTCCCAGTTCTTACAAATATAGGGATAACAAAGCAGTTCTATGGAATTACGGTGGTTAAGTCTTTGGCAAAGAAGCTACTACGGTGACTAACATTTCTGGGATCAGCGGAATGACTAGGAGCGGGAGATGCTATAAGCCAGATGCCTTAAAAGTATCACAAGAATCTAGACTGGACAAGGGGAAGGGAAAGGAGCACTTAACAGAGGATTTTGAAGAATTTTGGAATGAAGAGCCCATTACAACTAAAGGAACTTCCTCTAGGAAAGTGGTGTCTGACGAAGAAGCTTTCGAATTCCTGAAGTCGATCAAACATAGCAATTATAAAGTGATTGACCAGTTACATCGTACATCAGCCCGTATATCCATACTGTCGTTATTTCTTAATTCAGAGCCGCATCGAAAAACTTTGTTGGATGTCCTGAACAAGGCACATGTGAACCATGATATTATAGTCGAGAAATTAAGTGGAATTGTGGGGAATATTACTTCTTCTAATACAATTACATTCACGGATGAAGAAATTCCATCTGAAGGAATCGGTCACAATAAGGCATTACATATAGTGGTGAAATGCAAGGATCATGCAATAGCAAAGGTTCTCGTCGATAATGGATCGTCCTTAAATGTGATGCCAATGTCTACACTACTAAAGCTACCAGTAGACCCATCTCACATAAAGCATAACAATATGGTGGTAAGAGCTTTTGATGGAACTCGTAGAGGAGTTGTGGGTGATATCGAATTACCCATTAAGATTGGACCTCGAATTTTCAATGTGACATTTCAAGTAATGGACATAAGCCCCAGCCTATAGTTGTTTGTTAGGTAGACCCTGGATCCATTCAACAGGCGTCATTCCCTCAACTTTGCATCAGCGGTTAAAATTTATTTGTGAAAATACGTTGGCATGTGTGTTCGGTCAAGAGGATGTAATGGTTACCAAAACTACTAATATCCCTTATGTAGAGGCGGCAGAGGAAGCATTAGAATATTCTTTTCGATCATTCGAAATTGCTAACGCTACAATTTTCACTCATGCAGAAGATCGACAATCCTTACCAAGAGCCTCAGTGATGATTGCTAAAACCCTAATCAGAGGAGATTTCAAACCTGGGAAAGGTTTGGGAAAGTATCAACAAGGGAGAATTCAACCTGTAATTTTACCTAGGCTGGTTGAGAGGTTTGGTTTAGGATACAAACCAACTACTGATGATTGGAAGAGTATTCAGGAACGGAAAAGATTGCATAGGGTTGCCAAACTGGAAGATCAGGAAGTCAATGCCAACAAATTAATAATTCCACATATTTACGAGACCTTTAGAAAGGATGAAGCTGAAATAGATAGTCTAATAATGGAGATGTCAGACCTTCCAATTGCTGCTATTATCGAGAAGTATAAAGAACATGAAATGGATTCTTTAGTATACCCATGCCCTCCAAATTTTGAACTAAATAACTGGGAGGTCATCGAGCTGCCTGTCCTTTCCAAAGAAATTGAAGAGTAATCTATTCATCTTTATTTTTGCATTTGTTTCCTGTTAGTTAGGAGTCTCTCATTAGTTATGCCTAAGACTATGGGAAGTTTTCATTTTTGTACTCGGGCGTCCTATTTTGCATTCTTAATAAAAAAATATTTAGTAATTTCTTATTTCATAGTTCTTCTGTTCGCTCTCTCCTTCTCTCTCCTCTCTGACTATGTGAAATGATCCAGGATTTATAGCAATGAATTTGAAAACAAAAAAGATAGTAATTTTGAAACTGAGCTCAATGACCCGATCATAAGCAACGAACCAGAAGAAATTGACGACAATGAGGAGGATATATCGCCTGAACTTCTACGTTTAGTACAGGAGGAGGAAAGATTTGCTTTGCCATATCAAGAA

mRNA sequence

GAGCAAATGGCAAAAATCTTAGATTTGCTCGCTGCACAAAAAGGAAAAGCAGTGGCGGAGACTTCAGGTCCTCATAACGGTATTTCTGAGGTAGAAGATACATCAATATACCCTCCAGGATTCACACCACACGTATCACAACACCACGACGTATCGGTAGCACCTCCGCAACCAATCTTTTACACTCACGCAATGCCTACGGTACCGTTGGAAGTAGGGATAGCCCAAAACCCTGCCATTCCAATGCCCGGACAAGTTCAACCTTCGGTACAACTAAGGAGTCAGAAGAGCAATCCAAGTTATGTTTACGAGTATGATAATGACAGAGGAGAGGCAGAAAGAAGTGAATCAAGGGGAAAGTTGGATATTTTAGAGGAAATATTACGGCCCATTGAAGGAGCCAATGCATTTGGAAGCATAGATGCAACACAACTATGTTTAATCTCTAATGAACAACCTTCGAGTGTCCAAACCAGCTTGGCCATCTCCAAGCCTCTGACCATTCAAATTCCCAGTTCTTACAAATATAGGGATAACAAAGCAGTTCTATGGAATTACGTCTTTGGCAAAGAAGCTACTACGGTGACTAACATTTCTGGGATCAGCGGAATGACTAGGAGCGGGAGATGCTATAAGCCAGATGCCTTAAAAGTATCACAAGAATCTAGACTGGACAAGGGGAAGGGAAAGGAGCACTTAACAGAGGATTTTGAAGAATTTTGGAATGAAGAGCCCATTACAACTAAAGGAACTTCCTCTAGGAAAGTGGTGTCTGACGAAGAAGCTTTCGAATTCCTGAAGTCGATCAAACATAGCAATTATAAAGTGATTGACCAGTTACATCGTACATCAGCCCGTATATCCATACTGTCGTTATTTCTTAATTCAGAGCCGCATCGAAAAACTTTGTTGGATGTCCTGAACAAGGCACATGTGAACCATGATATTATAGTCGAGAAATTAAAGGCGGCAGAGGAAGCATTAGAATATTCTTTTCGATCATTCGAAATTGCTAACGCTACAATTTTCACTCATGCAGAAGATCGACAATCCTTACCAAGAGCCTCAGTGATGATTGCTAAAACCCTAATCAGAGGAGATTTCAAACCTGGGAAAGGTTTGGGAAAGTATCAACAAGGGAGAATTCAACCTGTAATTTTACCTAGGCTGGTTGAGAGGTTTGGTTTAGGATACAAACCAACTACTGATGATTGGAAGAGTATTCAGGAACGGAAAAGATTGCATAGGGTTGCCAAACTGGAAGATCAGGAAGTCAATGCCAACAAATTAATAATTCCACATATTTACGAGACCTTTAGAAAGGATGAAGCTGAAATAGATAGTCTAATAATGGAGATGTCAGACCTTCCAATTGCTGCTATTATCGAGAAGTATAAAGAACATGAAATGGATTCTTTAGTATACCCATGCCCTCCAAATTTTGAACTAAATAACTGGGAGGTCATCGAGCTGCCTGTCCTTTCCAAAGAAATTGAAGAGATTTATAGCAATGAATTTGAAAACAAAAAAGATAGTAATTTTGAAACTGAGCTCAATGACCCGATCATAAGCAACGAACCAGAAGAAATTGACGACAATGAGGAGGATATATCGCCTGAACTTCTACGTTTAGTACAGGAGGAGGAAAGATTTGCTTTGCCATATCAAGAA

Coding sequence (CDS)

GAGCAAATGGCAAAAATCTTAGATTTGCTCGCTGCACAAAAAGGAAAAGCAGTGGCGGAGACTTCAGGTCCTCATAACGGTATTTCTGAGGTAGAAGATACATCAATATACCCTCCAGGATTCACACCACACGTATCACAACACCACGACGTATCGGTAGCACCTCCGCAACCAATCTTTTACACTCACGCAATGCCTACGGTACCGTTGGAAGTAGGGATAGCCCAAAACCCTGCCATTCCAATGCCCGGACAAGTTCAACCTTCGGTACAACTAAGGAGTCAGAAGAGCAATCCAAGTTATGTTTACGAGTATGATAATGACAGAGGAGAGGCAGAAAGAAGTGAATCAAGGGGAAAGTTGGATATTTTAGAGGAAATATTACGGCCCATTGAAGGAGCCAATGCATTTGGAAGCATAGATGCAACACAACTATGTTTAATCTCTAATGAACAACCTTCGAGTGTCCAAACCAGCTTGGCCATCTCCAAGCCTCTGACCATTCAAATTCCCAGTTCTTACAAATATAGGGATAACAAAGCAGTTCTATGGAATTACGTCTTTGGCAAAGAAGCTACTACGGTGACTAACATTTCTGGGATCAGCGGAATGACTAGGAGCGGGAGATGCTATAAGCCAGATGCCTTAAAAGTATCACAAGAATCTAGACTGGACAAGGGGAAGGGAAAGGAGCACTTAACAGAGGATTTTGAAGAATTTTGGAATGAAGAGCCCATTACAACTAAAGGAACTTCCTCTAGGAAAGTGGTGTCTGACGAAGAAGCTTTCGAATTCCTGAAGTCGATCAAACATAGCAATTATAAAGTGATTGACCAGTTACATCGTACATCAGCCCGTATATCCATACTGTCGTTATTTCTTAATTCAGAGCCGCATCGAAAAACTTTGTTGGATGTCCTGAACAAGGCACATGTGAACCATGATATTATAGTCGAGAAATTAAAGGCGGCAGAGGAAGCATTAGAATATTCTTTTCGATCATTCGAAATTGCTAACGCTACAATTTTCACTCATGCAGAAGATCGACAATCCTTACCAAGAGCCTCAGTGATGATTGCTAAAACCCTAATCAGAGGAGATTTCAAACCTGGGAAAGGTTTGGGAAAGTATCAACAAGGGAGAATTCAACCTGTAATTTTACCTAGGCTGGTTGAGAGGTTTGGTTTAGGATACAAACCAACTACTGATGATTGGAAGAGTATTCAGGAACGGAAAAGATTGCATAGGGTTGCCAAACTGGAAGATCAGGAAGTCAATGCCAACAAATTAATAATTCCACATATTTACGAGACCTTTAGAAAGGATGAAGCTGAAATAGATAGTCTAATAATGGAGATGTCAGACCTTCCAATTGCTGCTATTATCGAGAAGTATAAAGAACATGAAATGGATTCTTTAGTATACCCATGCCCTCCAAATTTTGAACTAAATAACTGGGAGGTCATCGAGCTGCCTGTCCTTTCCAAAGAAATTGAAGAGATTTATAGCAATGAATTTGAAAACAAAAAAGATAGTAATTTTGAAACTGAGCTCAATGACCCGATCATAAGCAACGAACCAGAAGAAATTGACGACAATGAGGAGGATATATCGCCTGAACTTCTACGTTTAGTACAGGAGGAGGAAAGATTTGCTTTGCCATATCAAGAA

Protein sequence

EQMAKILDLLAAQKGKAVAETSGPHNGISEVEDTSIYPPGFTPHVSQHHDVSVAPPQPIFYTHAMPTVPLEVGIAQNPAIPMPGQVQPSVQLRSQKSNPSYVYEYDNDRGEAERSESRGKLDILEEILRPIEGANAFGSIDATQLCLISNEQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGKEATTVTNISGISGMTRSGRCYKPDALKVSQESRLDKGKGKEHLTEDFEEFWNEEPITTKGTSSRKVVSDEEAFEFLKSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDIIVEKLKAAEEALEYSFRSFEIANATIFTHAEDRQSLPRASVMIAKTLIRGDFKPGKGLGKYQQGRIQPVILPRLVERFGLGYKPTTDDWKSIQERKRLHRVAKLEDQEVNANKLIIPHIYETFRKDEAEIDSLIMEMSDLPIAAIIEKYKEHEMDSLVYPCPPNFELNNWEVIELPVLSKEIEEIYSNEFENKKDSNFETELNDPIISNEPEEIDDNEEDISPELLRLVQEEERFALPYQE
Homology
BLAST of Lsi05G007400 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.7e-57
Identity = 181/562 (32.21%), Postives = 258/562 (45.91%), Query Frame = 0

Query: 147  LISNEQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGKEATTVTN---ISGISG 206
            +I  E+  S+ + +   K +T++IP  + Y+DN AV W Y    E   +T+    + + G
Sbjct: 609  VIHYEEKPSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKY----ECQFITDNVVFATVEG 668

Query: 207  MTRSGRCYKPDALK-VSQESRLDKGKGK------EHLTEDFEEFWNEEPITTKGTSSRKV 266
            +TRSGRCY PD LK VS+E  + + KGK      E    D  + + E+    +  +  +V
Sbjct: 669  ITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMAGEDDLNDLSKVFTEKNTLVEKETDHEV 728

Query: 267  VSDEEAFEFLKSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDI 326
            VS EEA EFLK IK S YKVI+QLHRT ARIS+LSLF  SEPHRK LLD+LN+AHV HDI
Sbjct: 729  VSKEEACEFLKLIKQSEYKVIEQLHRTPARISMLSLFTYSEPHRKVLLDILNRAHVGHDI 788

Query: 327  -------IVEKLKAAE-----------------EALEY---------------------- 386
                   IVE + A                   +AL                        
Sbjct: 789  SVNALSEIVENITATNCISFTDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNI 848

Query: 387  ------------------------------------------------------------ 446
                                                                        
Sbjct: 849  MSRSTLMKLPIDPSYLRPSTMVVRAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSS 908

Query: 447  ------------------------------SFRSFEIANATIFTH---AEDRQSLPRASV 506
                                          S+RSFEIANATIF     + DR  + + S+
Sbjct: 909  YSCLLGRPWIHSAGAVPSSLHQSNGRSSGCSYRSFEIANATIFPTEGLSMDRY-VSKTSL 968

Query: 507  MIAKTLIRGDFKPGKGLGKYQQGRIQPVILPRLVERFGLGYKPTTDDWKSIQERKRLHRV 558
            MIAKT+I+  F+  KGLGK  QG  + + LP+  E+FGLGYKP T +W+ ++ + +  R 
Sbjct: 969  MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKNKEKRS 1028

BLAST of Lsi05G007400 vs. ExPASy TrEMBL
Match: A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 6.0e-50
Identity = 178/589 (30.22%), Postives = 254/589 (43.12%), Query Frame = 0

Query: 151  EQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGK-EATTVTNISGISGMTRSGR 210
            ++  +  TS    K LTIQ+PS +K++D KAV W Y        +V NI+GISG+TRSGR
Sbjct: 570  QESHNESTSFCNPKKLTIQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGR 629

Query: 211  CYKPDALKVSQESR-LDKGKGKE--HLTEDFEEFWNEEPITTKGTSSRKVVSDEEAFEFL 270
            CYKPD L V  +   L++G+  E  ++ E  ++   E PI  K    +K+V+DEEA EFL
Sbjct: 630  CYKPDNLTVPLDGLILEQGRKNEKTNVKEHCKDQDVEMPIIAKDIEYKKLVTDEEANEFL 689

Query: 271  KSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDIIVEK------ 330
            K +K S YK+I+Q+H T ARIS+LSLFLNSEPHRK LLD+LNKAHV HDI VEK      
Sbjct: 690  KIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIG 749

Query: 331  ------------------------------------------------------------ 390
                                                                        
Sbjct: 750  NITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLP 809

Query: 391  ------------------------------------------------------------ 450
                                                                        
Sbjct: 810  VDMSHIKSSTMVVKAFDGSRREVMGDIELPVKIGPCIFNIVFQVMEITPTYSFLLGRPWI 869

Query: 451  -----------------------------------------LKAAEEALEYSFRSFEIAN 510
                                                     ++A EEALE SFRSFEIA+
Sbjct: 870  HSAGVVPSTLHQKLKFIVGSKLICVMGEEDFLITKSVSTPYVEATEEALECSFRSFEIAH 929

Query: 511  ATIFTHAEDRQSLP-RASVMIAKTLIRGDFKPGKGLGKYQQGRIQPVILPRLVERFGLGY 558
            AT+     D    P ++ V +  T I G    G  L K  +  ++   +P    RFGLGY
Sbjct: 930  ATMMEATVDEVIKPHKSKVEVMTTRIMGG--GGYSLNKNLETLLK---IPSNDGRFGLGY 989

BLAST of Lsi05G007400 vs. ExPASy TrEMBL
Match: A0A5D3DEB3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00440 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-06
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 0

Query: 14  KGKAVAETSGPHNGISEVEDTSIYPPGFTPHVSQHHDVSVAPPQPIFYTHAMPTVPLEVG 73
           KGK + +T+   N I + +D  IYPP F P+   H +V    PQ     H +PT PL V 
Sbjct: 3   KGKVLVDTAQSSNPIQDTDD-PIYPPRFAPY---HMNV----PQSQTAQHYVPTNPLYV- 62

Query: 74  IAQNPAIPMPGQVQPSVQLRSQKSNPSYVYEYDNDRGEAERSESRGKLDILEEILRPIEG 133
                   +P  VQ    L +Q            D G+ E + ++ KLD+LEE L+ IEG
Sbjct: 63  --------VPPIVQGIEHLEAQAK--------IQDMGQNENTPAKQKLDVLEERLQEIEG 112

Query: 134 ANAFGSIDATQLCLI 149
            + +G+IDATQLCL+
Sbjct: 123 TDVYGNIDATQLCLV 112


HSP 2 Score: 204.9 bits (520), Expect = 8.7e-49
Identity = 161/523 (30.78%), Postives = 219/523 (41.87%), Query Frame = 0

Query: 147  LISNEQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGKEATTVTNISGISGMTR 206
            +I  E+  S+ + +   K +T++IP  + Y+DN AV W Y        V + + + G+TR
Sbjct: 609  VIHYEEKPSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSAT-VGGITR 668

Query: 207  SGRCYKPDALK-VSQESRLDKGKGK------EHLTEDFEEFWNEEPITTKGTSSRKVVSD 266
            SGRCY PD LK VS+E  + + KGK      E    D  + + ++    +  +  +VVS 
Sbjct: 669  SGRCYTPDNLKDVSKEDEVRRRKGKAIEMAGEDDLNDLSKVFTKKNTLVEKETDHEVVSK 728

Query: 267  EEAFEFLKSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDIIVE 326
            EEA EFLK IK S YKVI+QLHRT ARIS+LSLF+ SEPHRK LLD+LN+AHV HDI V 
Sbjct: 729  EEACEFLKLIKQSEYKVIEQLHRTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVN 788

Query: 327  KL---------------------------------------------------------- 386
             L                                                          
Sbjct: 789  ALSEIVENIIATNCISFTDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSR 848

Query: 387  ------------------------------------------------------------ 446
                                                                        
Sbjct: 849  STLMKLPIDPSYLRPSTMVVRAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSSYSC 908

Query: 447  -------------------------------------------------KAAEEALEYSF 489
                                                             +A EEALE S+
Sbjct: 909  LLGRPWIHSAGAVPSSLHQRLKFSVECGQAIVYGEEDMFVTKTSVLPYVEATEEALECSY 968

BLAST of Lsi05G007400 vs. ExPASy TrEMBL
Match: A0A6J1DV70 (uncharacterized protein LOC111024360 OS=Momordica charantia OX=3673 GN=LOC111024360 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.6e-48
Identity = 107/196 (54.59%), Postives = 140/196 (71.43%), Query Frame = 0

Query: 132 EGANAFGSIDATQLCLISNEQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNY---VF 191
           E A++  S     L +I  EQP+ +  + +I +PLTIQ+PS YKY+DNKAV W+Y     
Sbjct: 553 EEASSKYSFKLEPLVVIFKEQPTIISANSSILQPLTIQLPSPYKYKDNKAVPWHYGCHTL 612

Query: 192 GKEATTVTNISGISGMTRSGRCYKPDALKVSQ---ESRLDKGKGKEHLTEDFEEFWNEEP 251
            +E + VTNIS +SGMTRSG CYK + LK SQ   + ++   KGKE    D EE W EEP
Sbjct: 613 DEEVSIVTNISRVSGMTRSGICYKLETLKASQVDEQHKIWTVKGKEKDCPDLEEIWGEEP 672

Query: 252 ITTKGTSSRKVVSDEEAFEFLKSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLD 311
           +  KG+S +K+VSDEEA EFLK IKH+ YKVI+QLH T A IS+LS+F+NS+PHRK L+D
Sbjct: 673 VMAKGSSFKKIVSDEEASEFLKLIKHNEYKVIEQLHHTPACISMLSIFINSKPHRKALMD 732

Query: 312 VLNKAHVNHDIIVEKL 322
           VLN++HVN+DI +EKL
Sbjct: 733 VLNQSHVNYDITIEKL 748

BLAST of Lsi05G007400 vs. ExPASy TrEMBL
Match: A0A6J1DV70 (uncharacterized protein LOC111024360 OS=Momordica charantia OX=3673 GN=LOC111024360 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-24
Identity = 73/153 (47.71%), Postives = 93/153 (60.78%), Query Frame = 0

Query: 1   EQMAKILDLLAAQKGKAVAETSGPHNGISEVEDTSIYPPGFTPHVSQHHDVSVAPPQPIF 60
           EQM KILDLL AQKGK V E     + +  ++DTS+Y PGFTP V  H+ ++  P QPIF
Sbjct: 21  EQMTKILDLLMAQKGKLVVEEPHASDVVRGLDDTSLYAPGFTPQVHPHNGMTTIPGQPIF 80

Query: 61  YTHAMPTVPLEVGIAQNPAIPMPGQVQPSVQLRSQKSNPSYVYEYDNDRGEAERSE---S 120
           YT   P V    G  QN    +  QV P VQ R   ++    +E  N     E++E   S
Sbjct: 81  YTQTPPMVSFGEGAVQNQTFMVSEQVHPLVQQRKDINDLINNHELRNSGKVTEKAEKIAS 140

Query: 121 RGKLDILEEILRPIEGANAFGSIDATQLCLISN 151
           +GKLD LEE L+ IEGA+AF SIDATQLCL+++
Sbjct: 141 KGKLDFLEERLQAIEGADAFRSIDATQLCLMTD 173


HSP 2 Score: 196.4 bits (498), Expect = 3.1e-46
Identity = 174/583 (29.85%), Postives = 242/583 (41.51%), Query Frame = 0

Query: 158 TSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGK-EATTVTNISGISGMTRSGRCYKPDAL 217
           TS    K L IQ+PS +K++D KAV W Y        +V NI+GISG+TRSGRCYKPD L
Sbjct: 223 TSFCNPKKLPIQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGRCYKPDNL 282

Query: 218 KVSQESR-LDKGK--GKEHLTEDFEEFWNEEPITTKGTSSRKVVSDEEAFEFLKSIKHSN 277
            V  +   L++G+   K ++ E  ++   E PI  K    + +V+DEEA EFLK +K S 
Sbjct: 283 TVPSDGLILEQGRKNEKRNVKEHCKDQDVEMPIIAKDIEYKNLVTDEEANEFLKIVKQSE 342

Query: 278 YKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDIIVEK------------- 337
           YK+I+Q+H T ARIS+LSLFLNSEPHRK LLD+LNKAHV HDI V+K             
Sbjct: 343 YKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVKKFSGIIGNITSSNS 402

Query: 338 ------------------------------------------------------------ 397
                                                                       
Sbjct: 403 IVFTDDKIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIK 462

Query: 398 ------------------------------------------------------------ 457
                                                                       
Sbjct: 463 SSTMVVKAFDGSRREVMDDIELPVKIGSCIFNIVFQVMEITPTYRFLLGRPWIHSAGVVP 522

Query: 458 ----------------------------------LKAAEEALEYSFRSFEIANATIFTHA 517
                                             ++A EEALE SFRSFEIA+AT+    
Sbjct: 523 STLHQKLKFIVGSKLICVMGEEDFLITKPVSTPYVEATEEALECSFRSFEIAHATMMEAT 582

Query: 518 EDRQSLP-RASVMIAKTLIRGDFKPGKGLGKYQQGRIQPVILPRLVERFGLGYKPTTDDW 558
            D    P ++ V +  T I G    G  L K  +  ++    P    RFGLGYK +  D 
Sbjct: 583 VDEVIKPHKSKVEVMTTRIMGG--RGYSLNKNLETLLK---TPSNDGRFGLGYKSSIYDK 642

BLAST of Lsi05G007400 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 3.6e-57
Identity = 181/562 (32.21%), Postives = 258/562 (45.91%), Query Frame = 0

Query: 147  LISNEQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGKEATTVTN---ISGISG 206
            +I  E+  S+ + +   K +T++IP  + Y+DN AV W Y    E   +T+    + + G
Sbjct: 609  VIHYEEKPSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKY----ECQFITDNVVFATVEG 668

Query: 207  MTRSGRCYKPDALK-VSQESRLDKGKGK------EHLTEDFEEFWNEEPITTKGTSSRKV 266
            +TRSGRCY PD LK VS+E  + + KGK      E    D  + + E+    +  +  +V
Sbjct: 669  ITRSGRCYTPDNLKDVSKEDEVRRRKGKAIEMAGEDDLNDLSKVFTEKNTLVEKETDHEV 728

Query: 267  VSDEEAFEFLKSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDI 326
            VS EEA EFLK IK S YKVI+QLHRT ARIS+LSLF  SEPHRK LLD+LN+AHV HDI
Sbjct: 729  VSKEEACEFLKLIKQSEYKVIEQLHRTPARISMLSLFTYSEPHRKVLLDILNRAHVGHDI 788

Query: 327  -------IVEKLKAAE-----------------EALEY---------------------- 386
                   IVE + A                   +AL                        
Sbjct: 789  SVNALSEIVENITATNCISFTDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNI 848

Query: 387  ------------------------------------------------------------ 446
                                                                        
Sbjct: 849  MSRSTLMKLPIDPSYLRPSTMVVRAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSS 908

Query: 447  ------------------------------SFRSFEIANATIFTH---AEDRQSLPRASV 506
                                          S+RSFEIANATIF     + DR  + + S+
Sbjct: 909  YSCLLGRPWIHSAGAVPSSLHQSNGRSSGCSYRSFEIANATIFPTEGLSMDRY-VSKTSL 968

Query: 507  MIAKTLIRGDFKPGKGLGKYQQGRIQPVILPRLVERFGLGYKPTTDDWKSIQERKRLHRV 558
            MIAKT+I+  F+  KGLGK  QG  + + LP+  E+FGLGYKP T +W+ ++ + +  R 
Sbjct: 969  MIAKTMIKSGFQMHKGLGKDNQGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKNKEKRS 1028

BLAST of Lsi05G007400 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-49
Identity = 178/589 (30.22%), Postives = 254/589 (43.12%), Query Frame = 0

Query: 151  EQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGK-EATTVTNISGISGMTRSGR 210
            ++  +  TS    K LTIQ+PS +K++D KAV W Y        +V NI+GISG+TRSGR
Sbjct: 570  QESHNESTSFCNPKKLTIQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGR 629

Query: 211  CYKPDALKVSQESR-LDKGKGKE--HLTEDFEEFWNEEPITTKGTSSRKVVSDEEAFEFL 270
            CYKPD L V  +   L++G+  E  ++ E  ++   E PI  K    +K+V+DEEA EFL
Sbjct: 630  CYKPDNLTVPLDGLILEQGRKNEKTNVKEHCKDQDVEMPIIAKDIEYKKLVTDEEANEFL 689

Query: 271  KSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDIIVEK------ 330
            K +K S YK+I+Q+H T ARIS+LSLFLNSEPHRK LLD+LNKAHV HDI VEK      
Sbjct: 690  KIVKQSEYKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIG 749

Query: 331  ------------------------------------------------------------ 390
                                                                        
Sbjct: 750  NITSSNSIVFTDDEIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLP 809

Query: 391  ------------------------------------------------------------ 450
                                                                        
Sbjct: 810  VDMSHIKSSTMVVKAFDGSRREVMGDIELPVKIGPCIFNIVFQVMEITPTYSFLLGRPWI 869

Query: 451  -----------------------------------------LKAAEEALEYSFRSFEIAN 510
                                                     ++A EEALE SFRSFEIA+
Sbjct: 870  HSAGVVPSTLHQKLKFIVGSKLICVMGEEDFLITKSVSTPYVEATEEALECSFRSFEIAH 929

Query: 511  ATIFTHAEDRQSLP-RASVMIAKTLIRGDFKPGKGLGKYQQGRIQPVILPRLVERFGLGY 558
            AT+     D    P ++ V +  T I G    G  L K  +  ++   +P    RFGLGY
Sbjct: 930  ATMMEATVDEVIKPHKSKVEVMTTRIMGG--GGYSLNKNLETLLK---IPSNDGRFGLGY 989

BLAST of Lsi05G007400 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 204.9 bits (520), Expect = 1.8e-48
Identity = 161/523 (30.78%), Postives = 219/523 (41.87%), Query Frame = 0

Query: 147  LISNEQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGKEATTVTNISGISGMTR 206
            +I  E+  S+ + +   K +T++IP  + Y+DN AV W Y        V + + + G+TR
Sbjct: 609  VIHYEEKPSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSAT-VGGITR 668

Query: 207  SGRCYKPDALK-VSQESRLDKGKGK------EHLTEDFEEFWNEEPITTKGTSSRKVVSD 266
            SGRCY PD LK VS+E  + + KGK      E    D  + + ++    +  +  +VVS 
Sbjct: 669  SGRCYTPDNLKDVSKEDEVRRRKGKAIEMAGEDDLNDLSKVFTKKNTLVEKETDHEVVSK 728

Query: 267  EEAFEFLKSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDIIVE 326
            EEA EFLK IK S YKVI+QLHRT ARIS+LSLF+ SEPHRK LLD+LN+AHV HDI V 
Sbjct: 729  EEACEFLKLIKQSEYKVIEQLHRTPARISMLSLFMYSEPHRKVLLDILNRAHVGHDISVN 788

Query: 327  KL---------------------------------------------------------- 386
             L                                                          
Sbjct: 789  ALSEIVENIIATNCISFTDEEIPPEGTGHTKALHISVKCKDHHVARVLVDNGSSLNIMSR 848

Query: 387  ------------------------------------------------------------ 446
                                                                        
Sbjct: 849  STLMKLPIDPSYLRPSTMVVRAFDGARREVIGDIDIPLKIGPSTFNVSFQVMDINSSYSC 908

Query: 447  -------------------------------------------------KAAEEALEYSF 489
                                                             +A EEALE S+
Sbjct: 909  LLGRPWIHSAGAVPSSLHQRLKFSVECGQAIVYGEEDMFVTKTSVLPYVEATEEALECSY 968

BLAST of Lsi05G007400 vs. NCBI nr
Match: XP_022157707.1 (uncharacterized protein LOC111024360 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-47
Identity = 107/196 (54.59%), Postives = 140/196 (71.43%), Query Frame = 0

Query: 132 EGANAFGSIDATQLCLISNEQPSSVQTSLAISKPLTIQIPSSYKYRDNKAVLWNY---VF 191
           E A++  S     L +I  EQP+ +  + +I +PLTIQ+PS YKY+DNKAV W+Y     
Sbjct: 553 EEASSKYSFKLEPLVVIFKEQPTIISANSSILQPLTIQLPSPYKYKDNKAVPWHYGCHTL 612

Query: 192 GKEATTVTNISGISGMTRSGRCYKPDALKVSQ---ESRLDKGKGKEHLTEDFEEFWNEEP 251
            +E + VTNIS +SGMTRSG CYK + LK SQ   + ++   KGKE    D EE W EEP
Sbjct: 613 DEEVSIVTNISRVSGMTRSGICYKLETLKASQVDEQHKIWTVKGKEKDCPDLEEIWGEEP 672

Query: 252 ITTKGTSSRKVVSDEEAFEFLKSIKHSNYKVIDQLHRTSARISILSLFLNSEPHRKTLLD 311
           +  KG+S +K+VSDEEA EFLK IKH+ YKVI+QLH T A IS+LS+F+NS+PHRK L+D
Sbjct: 673 VMAKGSSFKKIVSDEEASEFLKLIKHNEYKVIEQLHHTPACISMLSIFINSKPHRKALMD 732

Query: 312 VLNKAHVNHDIIVEKL 322
           VLN++HVN+DI +EKL
Sbjct: 733 VLNQSHVNYDITIEKL 748

BLAST of Lsi05G007400 vs. NCBI nr
Match: XP_022157707.1 (uncharacterized protein LOC111024360 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 8.9e-24
Identity = 73/153 (47.71%), Postives = 93/153 (60.78%), Query Frame = 0

Query: 1   EQMAKILDLLAAQKGKAVAETSGPHNGISEVEDTSIYPPGFTPHVSQHHDVSVAPPQPIF 60
           EQM KILDLL AQKGK V E     + +  ++DTS+Y PGFTP V  H+ ++  P QPIF
Sbjct: 21  EQMTKILDLLMAQKGKLVVEEPHASDVVRGLDDTSLYAPGFTPQVHPHNGMTTIPGQPIF 80

Query: 61  YTHAMPTVPLEVGIAQNPAIPMPGQVQPSVQLRSQKSNPSYVYEYDNDRGEAERSE---S 120
           YT   P V    G  QN    +  QV P VQ R   ++    +E  N     E++E   S
Sbjct: 81  YTQTPPMVSFGEGAVQNQTFMVSEQVHPLVQQRKDINDLINNHELRNSGKVTEKAEKIAS 140

Query: 121 RGKLDILEEILRPIEGANAFGSIDATQLCLISN 151
           +GKLD LEE L+ IEGA+AF SIDATQLCL+++
Sbjct: 141 KGKLDFLEERLQAIEGADAFRSIDATQLCLMTD 173


HSP 2 Score: 196.4 bits (498), Expect = 6.4e-46
Identity = 174/583 (29.85%), Postives = 242/583 (41.51%), Query Frame = 0

Query: 158 TSLAISKPLTIQIPSSYKYRDNKAVLWNYVFGK-EATTVTNISGISGMTRSGRCYKPDAL 217
           TS    K L IQ+PS +K++D KAV W Y        +V NI+GISG+TRSGRCYKPD L
Sbjct: 223 TSFCNPKKLPIQVPSPFKFKDLKAVPWRYDCQVITGPSVDNITGISGITRSGRCYKPDNL 282

Query: 218 KVSQESR-LDKGK--GKEHLTEDFEEFWNEEPITTKGTSSRKVVSDEEAFEFLKSIKHSN 277
            V  +   L++G+   K ++ E  ++   E PI  K    + +V+DEEA EFLK +K S 
Sbjct: 283 TVPSDGLILEQGRKNEKRNVKEHCKDQDVEMPIIAKDIEYKNLVTDEEANEFLKIVKQSE 342

Query: 278 YKVIDQLHRTSARISILSLFLNSEPHRKTLLDVLNKAHVNHDIIVEK------------- 337
           YK+I+Q+H T ARIS+LSLFLNSEPHRK LLD+LNKAHV HDI V+K             
Sbjct: 343 YKIIEQMHHTPARISLLSLFLNSEPHRKVLLDILNKAHVGHDISVKKFSGIIGNITSSNS 402

Query: 338 ------------------------------------------------------------ 397
                                                                       
Sbjct: 403 IVFTDDKIPPEGLGHTKALHIQVKCKDYVIARVLVDNGSALNIMPKSTLLKLPVDMSHIK 462

Query: 398 ------------------------------------------------------------ 457
                                                                       
Sbjct: 463 SSTMVVKAFDGSRREVMDDIELPVKIGSCIFNIVFQVMEITPTYRFLLGRPWIHSAGVVP 522

Query: 458 ----------------------------------LKAAEEALEYSFRSFEIANATIFTHA 517
                                             ++A EEALE SFRSFEIA+AT+    
Sbjct: 523 STLHQKLKFIVGSKLICVMGEEDFLITKPVSTPYVEATEEALECSFRSFEIAHATMMEAT 582

Query: 518 EDRQSLP-RASVMIAKTLIRGDFKPGKGLGKYQQGRIQPVILPRLVERFGLGYKPTTDDW 558
            D    P ++ V +  T I G    G  L K  +  ++    P    RFGLGYK +  D 
Sbjct: 583 VDEVIKPHKSKVEVMTTRIMGG--RGYSLNKNLETLLK---TPSNDGRFGLGYKSSIYDK 642

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAU51.7e-5732.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DEB36.0e-5030.22Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DEB31.4e-0637.04Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1DV705.6e-4854.59uncharacterized protein LOC111024360 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DV704.3e-2447.71uncharacterized protein LOC111024360 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match NameE-valueIdentityDescription
KAA0065293.13.6e-5732.21uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa][more]
TYK21788.11.2e-4930.22uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa][more]
KAA0061241.11.8e-4830.78uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa][more]
XP_022157707.11.2e-4754.59uncharacterized protein LOC111024360 [Momordica charantia][more]
XP_022157707.18.9e-2447.71uncharacterized protein LOC111024360 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000467G-patch domainPFAMPF01585G-patchcoord: 368..399
e-value: 2.9E-4
score: 20.6
IPR000467G-patch domainPROSITEPS50174G_PATCHcoord: 355..401
score: 9.073572
NoneNo IPR availablePANTHERPTHR33240OS08G0508500 PROTEINcoord: 152..322
NoneNo IPR availablePANTHERPTHR33240:SF7GAG-PRO-LIKE PROTEINcoord: 152..322

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G007400.1Lsi05G007400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding