Lsi05G007020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G007020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NAC domain-containing protein
Location	chr05: 9357737 .. 9358423 (-)
RNA-Seq Expression	Lsi05G007020
Synteny	Lsi05G007020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAACCCCCCTTTCCTTCCCACCCTTTTCTTCCTCTTCTTCTCCAGAAAACTTACCGTGATCCATCGTAAATTCAACGATGGAGAGCACCGATTCATCGGCGGGTCCGCAACAGCCGAATTTACCACCCGGGTTCCGATTCCACCCGACCGATGAAGAGCTCGTGGTTCACTATCTCAAAAAGAAAGCCAATTCTTCCCCTTTGCCTGTGGCCATCATCGCTGAGGTCGATCTCTACAAATTCGACCCCTGGGAGCTTCCGGGTACAACTTTTAATTTGAAATGACTTTTTAAATGCTTTTAAAATATCGTATTTAATTAATTAATTAATTACTTTTCTAATGATAATTTTGTTACAGCGAAGGCTACTTTTGGAGAACAAGAATGGTACTTCTTTAGCCCAAGGGAAAGGAAGTACCCGAATGGTGCACGGCCGAATCGGGCAGCTACGTCCGGGTATTGGAAGGCGACAGGGACAGATAAGCCGGTGTTGGCCTCCGGTGGAAGTAATCAAAAAGTTGGAGTGAAGAAGGCGCTAGTATTCTACGGTGGAAAGCCGCCTAAAGGAATCAAAACCAATTGGATTATGCATGAATATAGGTTGGCTGATAATAAGCCAAGTATCAATAAGCCTCCTGGCTATGATTTGGCCAACAAGAAAAACTCTTTGAAGGTAATTCAATAA

mRNA sequence

CAAAAAACCCCCCTTTCCTTCCCACCCTTTTCTTCCTCTTCTTCTCCAGAAAACTTACCGTGATCCATCGTAAATTCAACGATGGAGAGCACCGATTCATCGGCGGGTCCGCAACAGCCGAATTTACCACCCGGGTTCCGATTCCACCCGACCGATGAAGAGCTCGTGGTTCACTATCTCAAAAAGAAAGCCAATTCTTCCCCTTTGCCTGTGGCCATCATCGCTGAGGTCGATCTCTACAAATTCGACCCCTGGGAGCTTCCGGCGAAGGCTACTTTTGGAGAACAAGAATGGTACTTCTTTAGCCCAAGGGAAAGGAAGTACCCGAATGGTGCACGGCCGAATCGGGCAGCTACGTCCGGGTATTGGAAGGCGACAGGGACAGATAAGCCGGTGTTGGCCTCCGGTGGAAGTAATCAAAAAGTTGGAGTGAAGAAGGCGCTAGTATTCTACGGTGGAAAGCCGCCTAAAGGAATCAAAACCAATTGGATTATGCATGAATATAGGTTGGCTGATAATAAGCCAAGTATCAATAAGCCTCCTGGCTATGATTTGGCCAACAAGAAAAACTCTTTGAAGGTAATTCAATAA

Coding sequence (CDS)

ATGGAGAGCACCGATTCATCGGCGGGTCCGCAACAGCCGAATTTACCACCCGGGTTCCGATTCCACCCGACCGATGAAGAGCTCGTGGTTCACTATCTCAAAAAGAAAGCCAATTCTTCCCCTTTGCCTGTGGCCATCATCGCTGAGGTCGATCTCTACAAATTCGACCCCTGGGAGCTTCCGGCGAAGGCTACTTTTGGAGAACAAGAATGGTACTTCTTTAGCCCAAGGGAAAGGAAGTACCCGAATGGTGCACGGCCGAATCGGGCAGCTACGTCCGGGTATTGGAAGGCGACAGGGACAGATAAGCCGGTGTTGGCCTCCGGTGGAAGTAATCAAAAAGTTGGAGTGAAGAAGGCGCTAGTATTCTACGGTGGAAAGCCGCCTAAAGGAATCAAAACCAATTGGATTATGCATGAATATAGGTTGGCTGATAATAAGCCAAGTATCAATAAGCCTCCTGGCTATGATTTGGCCAACAAGAAAAACTCTTTGAAGGTAATTCAATAA

Protein sequence

MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKVIQ

Homology

[Close]

BLAST of Lsi05G007020 vs. ExPASy Swiss-Prot
Match: Q9LD44 (NAC transcription factor 56 OS=Arabidopsis thaliana OX=3702 GN=NAC056 PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.1e-80
Identity = 144/169 (85.21%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 1   MESTDSSAG--PQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPW 60
           MESTDSS G  P QPNLPPGFRFHPTDEELVVHYLK+KA S+PLPVAIIAEVDLYKFDPW
Sbjct: 1   MESTDSSGGPPPPQPNLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPW 60

Query: 61  ELPAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVK 120
           ELPAKA+FGEQEWYFFSPR+RKYPNGARPNRAATSGYWKATGTDKPVLAS G NQKVGVK
Sbjct: 61  ELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDG-NQKVGVK 120

Query: 121 KALVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           KALVFY GKPPKG+K++WIMHEYRL +NKP+ N+PPG D  NKKNSL++
Sbjct: 121 KALVFYSGKPPKGVKSDWIMHEYRLIENKPN-NRPPGCDFGNKKNSLRL 167

[Close]

BLAST of Lsi05G007020 vs. ExPASy Swiss-Prot
Match: Q9ZNU2 (NAC domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=NAC018 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-75
Identity = 135/170 (79.41%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MESTDSSAG--PQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPW 60
           MESTDSS G  P QPNLPPGFRFHPTDEELV+HYLK+KA+S PLPVAIIA+VDLYKFDPW
Sbjct: 1   MESTDSSGGPPPPQPNLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPW 60

Query: 61  ELPAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAS-GGSNQKVGV 120
           ELPAKA+FGEQEWYFFSPR+RKYPNGARPNRAATSGYWKATGTDKPV+++ GG ++KVGV
Sbjct: 61  ELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGV 120

Query: 121 KKALVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           KKALVFY GKPPKG+K++WIMHEYRL DNKP+       D  NKKNSL++
Sbjct: 121 KKALVFYSGKPPKGVKSDWIMHEYRLTDNKPT----HICDFGNKKNSLRL 166

[Close]

BLAST of Lsi05G007020 vs. ExPASy Swiss-Prot
Match: Q8GY42 (NAC transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=NAC025 PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.8e-69
Identity = 123/163 (75.46%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 5   DSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWELPAKA 64
           DSS GP  P+LPPGFRFHPTDEELVVHYLKKKA+S PLPV+IIAE+DLYKFDPWELP+KA
Sbjct: 6   DSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKA 65

Query: 65  TFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKALVFY 124
           +FGE EWYFFSPR+RKYPNG RPNRAATSGYWKATGTDKP+     ++ KVGVKKALVFY
Sbjct: 66  SFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTC--NSHKVGVKKALVFY 125

Query: 125 GGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           GGKPPKGIKT+WIMHEYRL D   S    P      +KNSL++
Sbjct: 126 GGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRL 166

[Close]

BLAST of Lsi05G007020 vs. ExPASy Swiss-Prot
Match: A0SPJ6 (NAC transcription factor NAM-B2 OS=Triticum turgidum subsp. durum OX=4567 GN=NAM-B2 PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.9e-69
Identity = 130/182 (71.43%), Postives = 144/182 (79.12%), Query Frame = 0


Query: 1   MESTDSSAG----------PQQ---PNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAII 60
           M S+DSS+G          PQQ   P LPPGFRFHPTDEELVVHYLKKKA   PLPV II
Sbjct: 1   MGSSDSSSGSAPPRHQPPPPQQGSAPELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTII 60

Query: 61  AEVDLYKFDPWELPAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLA 120
            EVDLYKFDPWELP KATFGEQEWYFFSPR+RKYPNGARPNRAATSGYWKATGTDKP+LA
Sbjct: 61  TEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILA 120

Query: 121 SGGSNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLAD--NKPSINKPPGYDLANKKNSL 168
           SG   +KVGVKKALVFY GKPPKG+KTNWIMHEYRL D  +  + ++PP     ++  SL
Sbjct: 121 SGCGREKVGVKKALVFYRGKPPKGLKTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASL 180

[Close]

BLAST of Lsi05G007020 vs. ExPASy Swiss-Prot
Match: A2YMR0 (NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica OX=39946 GN=ONAC010 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 8.4e-69
Identity = 125/163 (76.69%), Postives = 132/163 (80.98%), Query Frame = 0


Query: 1   MESTDSSAGP--------------QQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAI 60
           MES DSS+G                 P LPPGFRFHPTDEELVVHYLKKKA S PLPV I
Sbjct: 1   MESPDSSSGSAPPRVLRRQQQQPGSAPELPPGFRFHPTDEELVVHYLKKKAASVPLPVTI 60

Query: 61  IAEVDLYKFDPWELPAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVL 120
           IAEVDLYKFDPWELP KA FGEQEWYFFSPR+RKYPNGARPNRAATSGYWKATGTDKP++
Sbjct: 61  IAEVDLYKFDPWELPEKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIM 120

Query: 121 ASGGSNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLADNKPS 150
           ASG + +KVGVKKALVFY GKPPKG+KTNWIMHEYRL D   S
Sbjct: 121 ASGSTREKVGVKKALVFYRGKPPKGVKTNWIMHEYRLTDTSSS 163

[Close]

BLAST of Lsi05G007020 vs. ExPASy TrEMBL
Match: A0A5D3BWT6 (NAC transcription factor 56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001260 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.6e-92
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL
Sbjct: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAS GSNQKVGVKKA
Sbjct: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASDGSNQKVGVKKA 120

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKP INKPPGYDLANKKNSLK+
Sbjct: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPCINKPPGYDLANKKNSLKL 167

[Close]

BLAST of Lsi05G007020 vs. ExPASy TrEMBL
Match: A0A0A0L2L3 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G100800 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.6e-92
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL
Sbjct: 2   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 61

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAS GSNQKVGVKKA
Sbjct: 62  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASDGSNQKVGVKKA 121

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKP INKPPGYDLANKKNSLK+
Sbjct: 122 LVFYGGKPPKGIKTNWIMHEYRLADNKPCINKPPGYDLANKKNSLKL 168

[Close]

BLAST of Lsi05G007020 vs. ExPASy TrEMBL
Match: A0A6J1J6Q8 (NAC transcription factor 56 OS=Cucurbita maxima OX=3661 GN=LOC111483064 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.2e-91
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANS PLPVAIIAEVDLYKFDPWEL
Sbjct: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSVPLPVAIIAEVDLYKFDPWEL 60

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYP GARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA
Sbjct: 61  PAKATFGEQEWYFFSPRERKYPKGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKPSIN+PPGYDLANKKNSLK+
Sbjct: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINRPPGYDLANKKNSLKL 167

[Close]

BLAST of Lsi05G007020 vs. ExPASy TrEMBL
Match: A0A6J1ENC9 (NAC transcription factor 56 OS=Cucurbita moschata OX=3662 GN=LOC111435927 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.2e-91
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANS PLPVAIIAEVDLYKFDPWEL
Sbjct: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSVPLPVAIIAEVDLYKFDPWEL 60

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYP GARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA
Sbjct: 61  PAKATFGEQEWYFFSPRERKYPKGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKPSIN+PPGYDLANKKNSLK+
Sbjct: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINRPPGYDLANKKNSLKL 167

[Close]

BLAST of Lsi05G007020 vs. ExPASy TrEMBL
Match: A0A1S3BTI4 (NAC transcription factor 56 OS=Cucumis melo OX=3656 GN=LOC103493347 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.2e-91
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL
Sbjct: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLA+ GSNQKVGVKKA
Sbjct: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAADGSNQKVGVKKA 120

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKP INKPPGYDLANKKNSLK+
Sbjct: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPCINKPPGYDLANKKNSLKL 167

[Close]

BLAST of Lsi05G007020 vs. NCBI nr
Match: XP_038905638.1 (NAC transcription factor 25-like [Benincasa hispida])

HSP 1 Score: 349.0 bits (894), Expect = 2.3e-92
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSA PQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL
Sbjct: 2   MESTDSSASPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 61

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA
Sbjct: 62  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 121

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLK+
Sbjct: 122 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKL 168

[Close]

BLAST of Lsi05G007020 vs. NCBI nr
Match: KAA0046853.1 (NAC transcription factor 56 [Cucumis melo var. makuwa] >TYK03292.1 NAC transcription factor 56 [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL
Sbjct: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAS GSNQKVGVKKA
Sbjct: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASDGSNQKVGVKKA 120

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKP INKPPGYDLANKKNSLK+
Sbjct: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPCINKPPGYDLANKKNSLKL 167

[Close]

BLAST of Lsi05G007020 vs. NCBI nr
Match: XP_004149287.1 (NAC transcription factor 25 [Cucumis sativus] >KGN56220.1 hypothetical protein Csa_010062 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL
Sbjct: 2   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 61

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAS GSNQKVGVKKA
Sbjct: 62  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASDGSNQKVGVKKA 121

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKP INKPPGYDLANKKNSLK+
Sbjct: 122 LVFYGGKPPKGIKTNWIMHEYRLADNKPCINKPPGYDLANKKNSLKL 168

[Close]

BLAST of Lsi05G007020 vs. NCBI nr
Match: XP_023553163.1 (NAC transcription factor 56 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANS PLPVAIIAEVDLYKFDPWEL
Sbjct: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSVPLPVAIIAEVDLYKFDPWEL 60

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYP GARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA
Sbjct: 61  PAKATFGEQEWYFFSPRERKYPKGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLK+
Sbjct: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKL 167

[Close]

BLAST of Lsi05G007020 vs. NCBI nr
Match: XP_008452274.1 (PREDICTED: NAC transcription factor 56 [Cucumis melo])

HSP 1 Score: 345.5 bits (885), Expect = 2.6e-91
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60
           MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL
Sbjct: 1   MESTDSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWEL 60

Query: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKA 120
           PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLA+ GSNQKVGVKKA
Sbjct: 61  PAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAADGSNQKVGVKKA 120

Query: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           LVFYGGKPPKGIKTNWIMHEYRLADNKP INKPPGYDLANKKNSLK+
Sbjct: 121 LVFYGGKPPKGIKTNWIMHEYRLADNKPCINKPPGYDLANKKNSLKL 167

[Close]

BLAST of Lsi05G007020 vs. TAIR 10
Match: AT3G15510.1 (NAC domain containing protein 2 )

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-81
Identity = 144/169 (85.21%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 1   MESTDSSAG--PQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPW 60
           MESTDSS G  P QPNLPPGFRFHPTDEELVVHYLK+KA S+PLPVAIIAEVDLYKFDPW
Sbjct: 1   MESTDSSGGPPPPQPNLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPW 60

Query: 61  ELPAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVK 120
           ELPAKA+FGEQEWYFFSPR+RKYPNGARPNRAATSGYWKATGTDKPVLAS G NQKVGVK
Sbjct: 61  ELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDG-NQKVGVK 120

Query: 121 KALVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           KALVFY GKPPKG+K++WIMHEYRL +NKP+ N+PPG D  NKKNSL++
Sbjct: 121 KALVFYSGKPPKGVKSDWIMHEYRLIENKPN-NRPPGCDFGNKKNSLRL 167

[Close]

BLAST of Lsi05G007020 vs. TAIR 10
Match: AT1G52880.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 282.3 bits (721), Expect = 2.5e-76
Identity = 135/170 (79.41%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MESTDSSAG--PQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPW 60
           MESTDSS G  P QPNLPPGFRFHPTDEELV+HYLK+KA+S PLPVAIIA+VDLYKFDPW
Sbjct: 1   MESTDSSGGPPPPQPNLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPW 60

Query: 61  ELPAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAS-GGSNQKVGV 120
           ELPAKA+FGEQEWYFFSPR+RKYPNGARPNRAATSGYWKATGTDKPV+++ GG ++KVGV
Sbjct: 61  ELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGV 120

Query: 121 KKALVFYGGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           KKALVFY GKPPKG+K++WIMHEYRL DNKP+       D  NKKNSL++
Sbjct: 121 KKALVFYSGKPPKGVKSDWIMHEYRLTDNKPT----HICDFGNKKNSLRL 166

[Close]

BLAST of Lsi05G007020 vs. TAIR 10
Match: AT1G61110.1 (NAC domain containing protein 25 )

HSP 1 Score: 262.3 bits (669), Expect = 2.7e-70
Identity = 123/163 (75.46%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 5   DSSAGPQQPNLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWELPAKA 64
           DSS GP  P+LPPGFRFHPTDEELVVHYLKKKA+S PLPV+IIAE+DLYKFDPWELP+KA
Sbjct: 6   DSSIGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKA 65

Query: 65  TFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGSNQKVGVKKALVFY 124
           +FGE EWYFFSPR+RKYPNG RPNRAATSGYWKATGTDKP+     ++ KVGVKKALVFY
Sbjct: 66  SFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTC--NSHKVGVKKALVFY 125

Query: 125 GGKPPKGIKTNWIMHEYRLADNKPSINKPPGYDLANKKNSLKV 168
           GGKPPKGIKT+WIMHEYRL D   S    P      +KNSL++
Sbjct: 126 GGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRL 166

[Close]

BLAST of Lsi05G007020 vs. TAIR 10
Match: AT3G04070.1 (NAC domain containing protein 47 )

HSP 1 Score: 231.1 bits (588), Expect = 6.6e-61
Identity = 101/135 (74.81%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 14  NLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYF 73
           +LPPGFRFHPTDEEL++HYL+KK +SSP+P++IIA+VD+YK DPW+LPAKA FGE+EWYF
Sbjct: 9   SLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYF 68

Query: 74  FSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGS--NQKVGVKKALVFYGGKPPKG 133
           FSPR+RKYPNGARPNRAA SGYWKATGTDK +    G   ++ +G+KKALVFY GKPPKG
Sbjct: 69  FSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPPKG 128

Query: 134 IKTNWIMHEYRLADN 147
           +KTNWIMHEYRLAD+
Sbjct: 129 VKTNWIMHEYRLADS 143

[Close]

BLAST of Lsi05G007020 vs. TAIR 10
Match: AT3G04070.2 (NAC domain containing protein 47 )

HSP 1 Score: 231.1 bits (588), Expect = 6.6e-61
Identity = 101/135 (74.81%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 14  NLPPGFRFHPTDEELVVHYLKKKANSSPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYF 73
           +LPPGFRFHPTDEEL++HYL+KK +SSP+P++IIA+VD+YK DPW+LPAKA FGE+EWYF
Sbjct: 9   SLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYF 68

Query: 74  FSPRERKYPNGARPNRAATSGYWKATGTDKPVLASGGS--NQKVGVKKALVFYGGKPPKG 133
           FSPR+RKYPNGARPNRAA SGYWKATGTDK +    G   ++ +G+KKALVFY GKPPKG
Sbjct: 69  FSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPPKG 128

Query: 134 IKTNWIMHEYRLADN 147
           +KTNWIMHEYRLAD+
Sbjct: 129 VKTNWIMHEYRLADS 143

The following BLAST results are available for this feature:

BLAST of Lsi05G007020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD44	2.1e-80	85.21	NAC transcription factor 56 OS=Arabidopsis thaliana OX=3702 GN=NAC056 PE=2 SV=1	[more]
Q9ZNU2	3.5e-75	79.41	NAC domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=NAC018 PE=2 ...	[more]
Q8GY42	3.8e-69	75.46	NAC transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=NAC025 PE=2 SV=1	[more]
A0SPJ6	4.9e-69	71.43	NAC transcription factor NAM-B2 OS=Triticum turgidum subsp. durum OX=4567 GN=NAM...	[more]
A2YMR0	8.4e-69	76.69	NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica OX=39946 GN=ONAC0...	[more]

BLAST of Lsi05G007020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWT6	5.6e-92	98.20	NAC transcription factor 56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0L2L3	5.6e-92	98.20	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G100800 PE=4 SV...	[more]
A0A6J1J6Q8	1.2e-91	97.60	NAC transcription factor 56 OS=Cucurbita maxima OX=3661 GN=LOC111483064 PE=4 SV=...	[more]
A0A6J1ENC9	1.2e-91	97.60	NAC transcription factor 56 OS=Cucurbita moschata OX=3662 GN=LOC111435927 PE=4 S...	[more]
A0A1S3BTI4	1.2e-91	97.60	NAC transcription factor 56 OS=Cucumis melo OX=3656 GN=LOC103493347 PE=4 SV=1	[more]

BLAST of Lsi05G007020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905638.1	2.3e-92	98.80	NAC transcription factor 25-like [Benincasa hispida]	[more]
KAA0046853.1	1.2e-91	98.20	NAC transcription factor 56 [Cucumis melo var. makuwa] >TYK03292.1 NAC transcrip...	[more]
XP_004149287.1	1.2e-91	98.20	NAC transcription factor 25 [Cucumis sativus] >KGN56220.1 hypothetical protein C...	[more]
XP_023553163.1	1.2e-91	98.20	NAC transcription factor 56 [Cucurbita pepo subsp. pepo]	[more]
XP_008452274.1	2.6e-91	97.60	PREDICTED: NAC transcription factor 56 [Cucumis melo]	[more]

BLAST of Lsi05G007020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15510.1	1.5e-81	85.21	NAC domain containing protein 2	[more]
AT1G52880.1	2.5e-76	79.41	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]
AT1G61110.1	2.7e-70	75.46	NAC domain containing protein 25	[more]
AT3G04070.1	6.6e-61	74.81	NAC domain containing protein 47	[more]
AT3G04070.2	6.6e-61	74.81	NAC domain containing protein 47	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 16..143 e-value: 6.0E-41 score: 140.4
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 15..169 score: 56.45187
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 24..167 e-value: 2.3E-55 score: 188.6
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 7..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR31719	NAC TRANSCRIPTION FACTOR 56	coord: 1..167
None	No IPR available	PANTHER	PTHR31719:SF156	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 1..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G007020.1	Lsi05G007020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048731	system development
molecular_function	GO:0003677	DNA binding