Lsi05G006820 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Wound-responsive family protein
Location	chr05: 9050860 .. 9051132 (+)
RNA-Seq Expression	Lsi05G006820
Synteny	Lsi05G006820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAGCGCAGCTTGCAGAGCTTGGTTCGTGGCGGCGAGCATCGGCGCCGTCGAGGCACTGAAGGACCAAGGCGTTTGCCGGTGGAATAATGCCATTAAATCTCTTCAACAACACGGCAAGACCAAGGTCAGATCTTATTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCTAACCAGATCAACAAGTCTCGAGATGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTCGGACCCAGTACTATTAGATTCTAG

mRNA sequence

ATGTCGAAGAGCGCAGCTTGCAGAGCTTGGTTCGTGGCGGCGAGCATCGGCGCCGTCGAGGCACTGAAGGACCAAGGCGTTTGCCGGTGGAATAATGCCATTAAATCTCTTCAACAACACGGCAAGACCAAGGTCAGATCTTATTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCTAACCAGATCAACAAGTCTCGAGATGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTCGGACCCAGTACTATTAGATTCTAG

Coding sequence (CDS)

ATGTCGAAGAGCGCAGCTTGCAGAGCTTGGTTCGTGGCGGCGAGCATCGGCGCCGTCGAGGCACTGAAGGACCAAGGCGTTTGCCGGTGGAATAATGCCATTAAATCTCTTCAACAACACGGCAAGACCAAGGTCAGATCTTATTATCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCTAACCAGATCAACAAGTCTCGAGATGAGAAGATGAGGAAAGTCATGGATTTGAGCTGTTTCGGACCCAGTACTATTAGATTCTAG

Protein sequence

MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAIANQINKSRDEKMRKVMDLSCFGPSTIRF

Homology

[Close]

BLAST of Lsi05G006820 vs. ExPASy TrEMBL
Match: A0A0A0L594 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099650 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.4e-38
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTKVRSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AIANQI KSR++KMRKVMDLSC GPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. ExPASy TrEMBL
Match: A0A5A7TZR6 (Putative wound-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00840 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.6e-37
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTKVRSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AIA QINKSR++KMRKVMDLSC GPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. ExPASy TrEMBL
Match: A0A6J1JZW3 (uncharacterized protein LOC111489778 OS=Cucurbita maxima OX=3661 GN=LOC111489778 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MSKSAACRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTK+RSYY AKK+SASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AI NQ+ +SR+EKMRKVMDLSC GPSTIRF
Sbjct: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. ExPASy TrEMBL
Match: A0A6J1EMN4 (uncharacterized protein LOC111435977 OS=Cucurbita moschata OX=3662 GN=LOC111435977 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS+SAACRAWFVAASIGAVEA+KDQGVCRWNN IKSL QHG +K+RSYYQAKKLSASSSS
Sbjct: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AIANQINKSR+EKMRKVMDL C GPSTIRF
Sbjct: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. ExPASy TrEMBL
Match: A0A6J1JD67 (uncharacterized protein LOC111483317 OS=Cucurbita maxima OX=3661 GN=LOC111483317 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS+SAACRAWFVAASIGAVEA+KDQGVCRWNN IKSL QHG +K+RSYYQAKKLSASSSS
Sbjct: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGSSKLRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AI+NQINKSR+EKMRKVMDL C GPSTIRF
Sbjct: 61 AISNQINKSREEKMRKVMDLGCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: XP_038877273.1 (uncharacterized protein LOC120069557 [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1   MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
           MSKSAACRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTK RSYYQAKKLSASSSS
Sbjct: 74  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKLSASSSS 133

Query: 61  AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
           AIANQINKSR+EKMRKVMDLSC GPSTIRF
Sbjct: 134 AIANQINKSREEKMRKVMDLSCLGPSTIRF 163

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: KAA0046885.1 (putative wound-induced protein [Cucumis melo var. makuwa] >TYK03263.1 putative wound-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 3.3e-37
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MS+SA CRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTKVRSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AIA QINKSR++KMRKVMDLSC GPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: XP_023538267.1 (uncharacterized protein LOC111799095 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MSKSAACRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTK RSYYQAKK+SASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AI NQ+ +SR+EK+RKVMDLSC GPSTIRF
Sbjct: 61 AIGNQMKRSREEKVRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: XP_022993930.1 (uncharacterized protein LOC111489778 [Cucurbita maxima])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MSKSAACRAWFVAASIGAVEALKDQGVCRWNN IKSLQQHGKTK+RSYY AKK+SASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AI NQ+ +SR+EKMRKVMDLSC GPSTIRF
Sbjct: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. NCBI nr
Match: KAG7031383.1 (hypothetical protein SDJN02_05423, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSS 60
          MSKSAACRAWFVAASIGAVEA KDQGVCRWNN IKSLQQHGKTK+RSYYQAKK+SASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60

Query: 61 AIANQINKSRDEKMRKVMDLSCFGPSTIRF 91
          AI NQ+ +SR+EKMRKVMDLSC GPSTIRF
Sbjct: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of Lsi05G006820 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAI 63
          S+A + W VAASIGAVEALKDQ GVCRWN  I+S  Q+ +  +RS  QAKKL  SSSS  
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKL--SSSSID 61

Query: 64 ANQINKSRDEKMRKVMDLSCFGPS 87
               K  +E +R VM LSC+GPS
Sbjct: 62 YTNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Lsi05G006820 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-15
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 4  SAACRAWFVAASIGAVEALKDQ-GVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAI 63
          S+  +AW VA SIGAVEALKDQ G+CRWN  ++S+ QH +  VRS  Q K+ S+SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 ANQINKSR-----DEKMRKVMDLSCFGPS 87
               +S      +E +R VM LSC+GP+
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Lsi05G006820 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 9  AWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKKLSASSSSAIANQINK 68
          +W VA +I AVE LKDQGV RWN   + L +    +VR+     + S  +SS+ A  I  
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 69 SR------DEKMRKVMDLSCFGPSTIRF 91
                  +    K M LSCFGP+T+RF
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGPTTVRF 95

[Close]

BLAST of Lsi05G006820 vs. TAIR 10
Match: AT2G14070.1 (wound-responsive protein-related )

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 1   MSKSAACR--AWFVAASIGAVEALKDQGVCRWNNAIKSLQQHGKTKVRSYYQAKK--LSA 60
           MS +A+ R  +W VA +I AVE        RWN  ++   +  + ++R+     +   SA
Sbjct: 104 MSAAASTRHTSWMVATAIAAVET-------RWNYPLRFFNKDVRARLRAIAVTSRPPSSA 163

Query: 61  SSSSAIANQINKSR------DEKMRKVMDLSCFGPSTIRF 91
           SSSS+ +  + K        +  M +VM LSCFGP+T+RF
Sbjct: 164 SSSSSSSADLVKENHPMPKSEASMERVMCLSCFGPTTVRF 196

The following BLAST results are available for this feature:

BLAST of Lsi05G006820 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L594	9.4e-38	92.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099650 PE=4 SV=1	[more]
A0A5A7TZR6	1.6e-37	92.22	Putative wound-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1JZW3	1.8e-36	88.89	uncharacterized protein LOC111489778 OS=Cucurbita maxima OX=3661 GN=LOC111489778...	[more]
A0A6J1EMN4	1.8e-36	88.89	uncharacterized protein LOC111435977 OS=Cucurbita moschata OX=3662 GN=LOC1114359...	[more]
A0A6J1JD67	4.0e-36	87.78	uncharacterized protein LOC111483317 OS=Cucurbita maxima OX=3661 GN=LOC111483317...	[more]

BLAST of Lsi05G006820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877273.1	1.0e-38	95.56	uncharacterized protein LOC120069557 [Benincasa hispida]	[more]
KAA0046885.1	3.3e-37	92.22	putative wound-induced protein [Cucumis melo var. makuwa] >TYK03263.1 putative w...	[more]
XP_023538267.1	3.7e-36	88.89	uncharacterized protein LOC111799095 [Cucurbita pepo subsp. pepo]	[more]
XP_022993930.1	3.7e-36	88.89	uncharacterized protein LOC111489778 [Cucurbita maxima]	[more]
KAG7031383.1	3.7e-36	88.89	hypothetical protein SDJN02_05423, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi05G006820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	7.7e-16	57.14	Wound-responsive family protein	[more]
AT4G10270.1	8.5e-15	49.44	Wound-responsive family protein	[more]
AT4G33560.1	1.7e-10	39.77	Wound-responsive family protein	[more]
AT2G14070.1	4.7e-05	34.00	wound-responsive protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..85 e-value: 4.8E-27 score: 94.8
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 4..90
None	No IPR available	PANTHER	PTHR33090:SF69	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 4..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006820.1	Lsi05G006820.1	mRNA