Lsi05G006660 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Glial fibrillary acidic protein-like
Location	chr05: 8788476 .. 8788724 (+)
RNA-Seq Expression	Lsi05G006660
Synteny	Lsi05G006660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACAGATTTTGCGATATGGAGAGACGAATATGACATAATGAGACACAAATATGATGACACTAGAAATCAGATTGAACAAGGAGCTGAGAAATTAAGACAGATGGCGAAAATGACAGATCAATTCTTAGCGCAAGCAATGACCCTCCAACAAGGCATCATACCTATACAGTGCAACAGCAAAAAGTTGTCTCGTTTCCTAGGGGTTATAGGGCAATACCTCGGGCGTTTTGGGTGCTACCATTAG

mRNA sequence

ATGTCAACAGATTTTGCGATATGGAGAGACGAATATGACATAATGAGACACAAATATGATGACACTAGAAATCAGATTGAACAAGGAGCTGAGAAATTAAGACAGATGGCGAAAATGACAGATCAATTCTTAGCGCAAGCAATGACCCTCCAACAAGGCATCATACCTATACAGTGCAACAGCAAAAAGTTGTCTCGTTTCCTAGGGGTTATAGGGCAATACCTCGGGCGTTTTGGGTGCTACCATTAG

Coding sequence (CDS)

ATGTCAACAGATTTTGCGATATGGAGAGACGAATATGACATAATGAGACACAAATATGATGACACTAGAAATCAGATTGAACAAGGAGCTGAGAAATTAAGACAGATGGCGAAAATGACAGATCAATTCTTAGCGCAAGCAATGACCCTCCAACAAGGCATCATACCTATACAGTGCAACAGCAAAAAGTTGTCTCGTTTCCTAGGGGTTATAGGGCAATACCTCGGGCGTTTTGGGTGCTACCATTAG

Protein sequence

MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCNSKKLSRFLGVIGQYLGRFGCYH

Homology

[Close]

BLAST of Lsi05G006660 vs. ExPASy TrEMBL
Match: A0A5D3BQ93 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00080 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-23
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 4   DFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCNSKK 63
           DFAIWRDEY+IMRHKY+D + QIEQG +KLR MA+  DQF  + + LQQ I+PIQ  S++
Sbjct: 169 DFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIALQQDIVPIQRGSRE 228

Query: 64  LSRFLGVIGQYLGRFGCYH 83
           LSRFLG+IG YLG FGCYH
Sbjct: 229 LSRFLGIIGHYLGCFGCYH 247

[Close]

BLAST of Lsi05G006660 vs. ExPASy TrEMBL
Match: A0A5D3DUN1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17837G00010 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.8e-23
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1   MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCN 60
           MS DF +W+DEY+ +R KYDD   ++E+GAEKLRQMA++ DQFL QA TL+QG+IP +  
Sbjct: 62  MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDT 121

Query: 61  SKKLSRFLGVIGQYLGRFGCYH 83
            K+LS FLG+IGQ LGRFGCYH
Sbjct: 122 DKELSHFLGIIGQCLGRFGCYH 143

[Close]

BLAST of Lsi05G006660 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.9e-22
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1   MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCN 60
           MS DF +W+DEY+ +R KYDD   ++E+GAEKLRQMA++ DQF  QA TL+QG+IP +  
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 232

Query: 61  SKKLSRFLGVIGQYLGRFGCYH 83
            K+LS FLG+IGQ LGRFGCYH
Sbjct: 233 DKELSHFLGIIGQCLGRFGCYH 254

[Close]

BLAST of Lsi05G006660 vs. ExPASy TrEMBL
Match: A0A5A7TXA1 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001520 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.3e-21
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1   MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCN 60
           MS DF +W+DEY+ +R KYDD   ++E+GAEKLRQMA++ DQF  QA TL+QG+IP +  
Sbjct: 384 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 443

Query: 61  SKKLSRFLGVIGQYLGRFGCYH 83
            K+LS FLG+IGQ LGRF CYH
Sbjct: 444 DKELSHFLGIIGQCLGRFRCYH 465

[Close]

BLAST of Lsi05G006660 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.3e-21
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1   MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCN 60
           MS DF +W+DEY+ +R KYDD   ++E+GAEKLRQMA + DQF  QA TL+QG+IP +  
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDI 232

Query: 61  SKKLSRFLGVIGQYLGRFGCYH 83
            ++LS FLG+IGQ LGRFGCYH
Sbjct: 233 DEELSHFLGIIGQCLGRFGCYH 254

[Close]

BLAST of Lsi05G006660 vs. NCBI nr
Match: KAA0033848.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 5.5e-23
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 4   DFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCNSKK 63
           DFAIWRDEY+IMRHKY+D + QIEQG +KLR MA+  DQF  + + LQQ I+PIQ  S++
Sbjct: 169 DFAIWRDEYNIMRHKYEDVKGQIEQGPKKLRHMARKADQFSTRTIALQQDIVPIQRGSRE 228

Query: 64  LSRFLGVIGQYLGRFGCYH 83
           LSRFLG+IG YLG FGCYH
Sbjct: 229 LSRFLGIIGHYLGCFGCYH 247

[Close]

BLAST of Lsi05G006660 vs. NCBI nr
Match: TYK27025.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-22
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1   MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCN 60
           MS DF +W+DEY+ +R KYDD   ++E+GAEKLRQMA++ DQFL QA TL+QG+IP +  
Sbjct: 62  MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFLVQARTLRQGVIPTRDT 121

Query: 61  SKKLSRFLGVIGQYLGRFGCYH 83
            K+LS FLG+IGQ LGRFGCYH
Sbjct: 122 DKELSHFLGIIGQCLGRFGCYH 143

[Close]

BLAST of Lsi05G006660 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 8.0e-22
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1   MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCN 60
           MS DF +W+DEY+ +R KYDD   ++E+GAEKLRQMA++ DQF  QA TL+QG+IP +  
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 232

Query: 61  SKKLSRFLGVIGQYLGRFGCYH 83
            K+LS FLG+IGQ LGRFGCYH
Sbjct: 233 DKELSHFLGIIGQCLGRFGCYH 254

[Close]

BLAST of Lsi05G006660 vs. NCBI nr
Match: KAA0046606.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 6.8e-21
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1   MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCN 60
           MS DF +W+DEY+ +R KYDD   ++E+GAEKLRQMA++ DQF  QA TL+QG+IP +  
Sbjct: 384 MSIDFMMWKDEYETLRRKYDDAIGRMERGAEKLRQMARVADQFSVQARTLRQGVIPTRDT 443

Query: 61  SKKLSRFLGVIGQYLGRFGCYH 83
            K+LS FLG+IGQ LGRF CYH
Sbjct: 444 DKELSHFLGIIGQCLGRFRCYH 465

[Close]

BLAST of Lsi05G006660 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.8e-21
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1   MSTDFAIWRDEYDIMRHKYDDTRNQIEQGAEKLRQMAKMTDQFLAQAMTLQQGIIPIQCN 60
           MS DF +W+DEY+ +R KYDD   ++E+GAEKLRQMA + DQF  QA TL+QG+IP +  
Sbjct: 173 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQARTLRQGVIPTRDI 232

Query: 61  SKKLSRFLGVIGQYLGRFGCYH 83
            ++LS FLG+IGQ LGRFGCYH
Sbjct: 233 DEELSHFLGIIGQCLGRFGCYH 254

The following BLAST results are available for this feature:

BLAST of Lsi05G006660 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQ93	2.7e-23	67.09	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DUN1	7.8e-23	63.41	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VDD9	3.9e-22	62.20	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TXA1	3.3e-21	60.98	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SM49	4.3e-21	60.98	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Lsi05G006660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033848.1	5.5e-23	67.09	glial fibrillary acidic protein-like [Cucumis melo var. makuwa] >TYK01230.1 glia...	[more]
TYK27025.1	1.6e-22	63.41	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0065294.1	8.0e-22	62.20	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0046606.1	6.8e-21	60.98	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0025321.1	8.8e-21	60.98	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]

BLAST of Lsi05G006660 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006660.1	Lsi05G006660.1	mRNA