Lsi05G006510 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAATACCCAACGCTTTCTATAAATTGAGAAGCAAGTCCTCTCAACTGAGGGAACTCACCTCCACCACGAATTGTCGGAATTCTACGACGGACGACGGAGCGGAAAATGGATTCCTGCCTAATCGGTCAATGGTAGCGATTGTAAATTTTTGGTACTTTCAACCTCGCTTCTTCCCCGGAGTCAGATCAGAGCCGTCGTTCTCGTTCTGACCACTCTTCTTCCACGAGAGACTCGCCGGAGCGGTTAGTTTCCCGATGAAATTCCTTTTCGAGTTCGTTTCTTGCTGCGTGCCGGTGAACATGTCACGCATAGAGAATCCGGAGGAGACAGAGGCGCCAGGACCTAAGGAGATGAGATCTCTGGCTCCGATTACAACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTATTGCCTTCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGGTGATGGAGAGAGAGAAGAGCGATGATCAGACGGCGGAATCGGAACGATCGGTGAAAAGAAAGAGTGGATCTCGAGACGGAGAAAGCAGAGGAGTTCAGAGCCGTAATAACAGTAACGATTTCAGGTACGTTATTGTTTGTCAGTTCATGAATCTTCCGTATGATTTTCGAAACCGTAAAGATCCGTGAAACGAAAACGACATCTGAAAAGAATCTTTCTGTTATTTTCTCTCTCTCTCAGCCTCAGGCGAAGTCCTGCAGCGATTCCGGTCGTGATTCCGGCGTTTTCTCCGACTCCGTTCTTGTTCTGATTCAATTACTCTTCCACTTTCCGATCACTCATGGCTGTGTAGTATATATATATATATAGTTTTATCATTTAGGTTGGTTGCTGTAATTTGTATAATTATTAATTATGATTTGGAAACAGAAAGCTGAGATTATTGAGGAAGAAAACTTTGTCCATGGAAGTTATTGCAGCTTGTTTGAGTGCTTTCTTTAATGGGGACTCTCTGCAATTTAAATGTTCCCATTTTTCCTCATCATGCTTTGCTTATTTCTCTGATTTCCATGCCGTTTTGGATTATTCTTAGAGCAAGAATGTTCAATCTGTTTATGATTCTTTACACAATTGCGTTGAAGAAACTTAATTTTGGTTCTTCAAGTTTAAGTTCTAT CAATACCCAACGCTTTCTATAAATTGAGAAGCAAGTCCTCTCAACTGAGGGAACTCACCTCCACCACGAATTGTCGGAATTCTACGACGGACGACGGAGCGGAAAATGGATTCCTGCCTAATCGGTCAATGGTAGCGATTGTAAATTTTTGGTACTTTCAACCTCGCTTCTTCCCCGGAGTCAGATCAGAGCCGTCGTTCTCGTTCTGACCACTCTTCTTCCACGAGAGACTCGCCGGAGCGGTTAGTTTCCCGATGAAATTCCTTTTCGAGTTCGTTTCTTGCTGCGTGCCGGTGAACATGTCACGCATAGAGAATCCGGAGGAGACAGAGGCGCCAGGACCTAAGGAGATGAGATCTCTGGCTCCGATTACAACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTATTGCCTTCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGGTGATGGAGAGAGAGAAGAGCGATGATCAGACGGCGGAATCGGAACGATCGGTGAAAAGAAAGAGTGGATCTCGAGACGGAGAAAGCAGAGGAGTTCAGAGCCGTAATAACAGTAACGATTTCAGCCTCAGGCGAAGTCCTGCAGCGATTCCGGTCGTGATTCCGGCGTTTTCTCCGACTCCGTTCTTGTTCTGATTCAATTACTCTTCCACTTTCCGATCACTCATGGCTGTGTAGTATATATATATATATAGTTTTATCATTTAGGTTGGTTGCTGTAATTTGTATAATTATTAATTATGATTTGGAAACAGAAAGCTGAGATTATTGAGGAAGAAAACTTTGTCCATGGAAGTTATTGCAGCTTGTTTGAGTGCTTTCTTTAATGGGGACTCTCTGCAATTTAAATGTTCCCATTTTTCCTCATCATGCTTTGCTTATTTCTCTGATTTCCATGCCGTTTTGGATTATTCTTAGAGCAAGAATGTTCAATCTGTTTATGATTCTTTACACAATTGCGTTGAAGAAACTTAATTTTGGTTCTTCAAGTTTAAGTTCTAT ATGAAATTCCTTTTCGAGTTCGTTTCTTGCTGCGTGCCGGTGAACATGTCACGCATAGAGAATCCGGAGGAGACAGAGGCGCCAGGACCTAAGGAGATGAGATCTCTGGCTCCGATTACAACCAGAAAACACCGGCGGAGAAAACGAAGCGCGTTATTGCCTTCGGCGGCGAAACTAGCCGCCGATTGGAAGCCGTCGCTGGGAGCGATCTCGGAGGATAAGGTAGTTCTGGTGGTGATGGAGAGAGAGAAGAGCGATGATCAGACGGCGGAATCGGAACGATCGGTGAAAAGAAAGAGTGGATCTCGAGACGGAGAAAGCAGAGGAGTTCAGAGCCGTAATAACAGTAACGATTTCAGCCTCAGGCGAAGTCCTGCAGCGATTCCGGTCGTGATTCCGGCGTTTTCTCCGACTCCGTTCTTGTTCTGA MKFLFEFVSCCVPVNMSRIENPEETEAPGPKEMRSLAPITTRKHRRRKRSALLPSAAKLAADWKPSLGAISEDKVVLVVMEREKSDDQTAESERSVKRKSGSRDGESRGVQSRNNSNDFSLRRSPAAIPVVIPAFSPTPFLF Homology
BLAST of Lsi05G006510 vs. ExPASy TrEMBL
Match: A0A0A0L6G1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G094500 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.4e-59 Identity = 129/143 (90.21%), Postives = 133/143 (93.01%), Query Frame = 0
BLAST of Lsi05G006510 vs. ExPASy TrEMBL
Match: A0A6J1EVT0 (uncharacterized protein LOC111438455 OS=Cucurbita moschata OX=3662 GN=LOC111438455 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 6.9e-59 Identity = 126/142 (88.73%), Postives = 133/142 (93.66%), Query Frame = 0
BLAST of Lsi05G006510 vs. ExPASy TrEMBL
Match: A0A1S3BTM8 (uncharacterized protein LOC103493394 OS=Cucumis melo OX=3656 GN=LOC103493394 PE=4 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57 Identity = 128/143 (89.51%), Postives = 132/143 (92.31%), Query Frame = 0
BLAST of Lsi05G006510 vs. ExPASy TrEMBL
Match: A0A6J1JD62 (uncharacterized protein LOC111483313 OS=Cucurbita maxima OX=3661 GN=LOC111483313 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57 Identity = 124/142 (87.32%), Postives = 131/142 (92.25%), Query Frame = 0
BLAST of Lsi05G006510 vs. ExPASy TrEMBL
Match: A0A6J1FP47 (uncharacterized protein LOC111447225 OS=Cucurbita moschata OX=3662 GN=LOC111447225 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51 Identity = 114/142 (80.28%), Postives = 128/142 (90.14%), Query Frame = 0
BLAST of Lsi05G006510 vs. NCBI nr
Match: XP_038905048.1 (uncharacterized protein LOC120091204 [Benincasa hispida]) HSP 1 Score: 254.6 bits (649), Expect = 5.0e-64 Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 0
BLAST of Lsi05G006510 vs. NCBI nr
Match: XP_004149939.2 (uncharacterized protein LOC101213465 [Cucumis sativus] >KGN56182.1 hypothetical protein Csa_011709 [Cucumis sativus]) HSP 1 Score: 238.8 bits (608), Expect = 2.9e-59 Identity = 129/143 (90.21%), Postives = 133/143 (93.01%), Query Frame = 0
BLAST of Lsi05G006510 vs. NCBI nr
Match: XP_022932132.1 (uncharacterized protein LOC111438455 [Cucurbita moschata] >XP_023520436.1 uncharacterized protein LOC111783825 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 236.5 bits (602), Expect = 1.4e-58 Identity = 126/142 (88.73%), Postives = 133/142 (93.66%), Query Frame = 0
BLAST of Lsi05G006510 vs. NCBI nr
Match: KAG6577452.1 (hypothetical protein SDJN03_25026, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 233.8 bits (595), Expect = 9.2e-58 Identity = 125/142 (88.03%), Postives = 132/142 (92.96%), Query Frame = 0
BLAST of Lsi05G006510 vs. NCBI nr
Match: KAG7015524.1 (hypothetical protein SDJN02_23160 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57 Identity = 125/142 (88.03%), Postives = 132/142 (92.96%), Query Frame = 0
BLAST of Lsi05G006510 vs. TAIR 10
Match: AT5G54585.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06 Identity = 46/142 (32.39%), Postives = 65/142 (45.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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