Lsi05G006490 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006490
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr05: 8258848 .. 8260018 (+)
RNA-Seq Expression	Lsi05G006490
Synteny	Lsi05G006490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATAATGATTCGTGTGAAACTACCGGTGAAAAGGGAAGAAAGAAGAAGAAGTGATTGACTTCTAGGGTCGACTAGTAGGCCAATATACAAACAAAAAAGGGAAAAGACTAATGTCATTACCCTTTCTTCTTATGTAAGATCTAATGCATATTATATTAATTATAAACAAGTGTACATTATATTATTTTACTCATATATTGATCGTAATCATTTCTATTGTATATGATGAGGACACAAATCAATCAACTAAACGTGTGAAAGTAGTGGAGGCTCCTGGAGTGCCTACATCATTAGATTTTGAGGAAAGGTTATTAGGGGACATGGCAATAGACTTCATTCCATTAAGAGTACTACAACCGGGGAGGAATTTGTAGACGAAAAAAAAGAGAATGTGTTTGGAACACAATTAGTTCCATATGGTCACAACTTTGAGGTATATTATATATTCAACCGTATATAATAAATAAACGTAAAGTATATATTTACTTAATGATTTAAATAACATGCAGAAGGAGAATACAAGTAATAATGAGAATGTTAACATCGAGGAGTAAGAGGATATTGTTAAAGAAACCGTTGATGAGGTCAGAAATTATGTATATACTACTGCTTTAATAACATATAAATTATAATTAAGATTTATAATCATGTATTTATACTAAATTTATAAATACTTATTTCTACTGCTTATTAGGAGATTATATGCGAACATCCTAATGATGTCATGGAGCAAGATAATGTCACAACTGAGATTGAAATTAATTGTGACCAATCAGAGGTATACTATAATTAATACATCTTTAATCTATTGCATTATATATATATAAGTTTATATAAGTTTATATAATCTACTGTGTATCAAGATGATGACATCGTGCCGTTTGAACCTAAGAGGAGAGAACTATCTAAAGACAAAGGGAAAAAAGACAATAAAAGATTTGTTCCAAGGACTCGCTCAAGCAAGGTAAAAACATATGTGAGATTTATTGGAGAAGAAAATTAAAATTGAAGTTTAATCTATTTTTTGTAAATTAAAACGAATTAAGGGTGCTGCGAAAACACCACAACGACAATCTGAACAGAAAGAAACACAACAAACAGTGGGGCCAAAACGTCCAAGGGTAGTTGAGGAAAAAAACATTGTGAAGAGAAAGGATAAAGTTACGAAG

mRNA sequence

AGAATAATGATTCGTGTGAAACTACCGGTGAAAAGGGAAGAAAGAAGAAGAAGGTCGACTAGTAGGCCAATATACAAACAAAAAAGGGAAAAGACTAATGTCATTACCCTTTCTTCTTATGACACAAATCAATCAACTAAACGTGTGAAAGTAGTGGAGGCTCCTGGAGTGCCTACATCATTAGATTTTGAGGAAAGGGGACATGGCAATAGACTTCATTCCATTAAGAGTACTACAACCGGGGAGGAATTTGTAGACGAAAAAAAAGAGAATGTGTTTGGAACACAATTAGTTCCATATGGTCACAACTTTGAGGAGATTATATGCGAACATCCTAATGATGTCATGGAGCAAGATAATGTCACAACTGAGATTGAAATTAATTGTGACCAATCAGAGGGTGCTGCGAAAACACCACAACGACAATCTGAACAGAAAGAAACACAACAAACAGTGGGGCCAAAACGTCCAAGGGTAGTTGAGGAAAAAAACATTGTGAAGAGAAAGGATAAAGTTACGAAG

Coding sequence (CDS)

AGAATAATGATTCGTGTGAAACTACCGGTGAAAAGGGAAGAAAGAAGAAGAAGGTCGACTAGTAGGCCAATATACAAACAAAAAAGGGAAAAGACTAATGTCATTACCCTTTCTTCTTATGACACAAATCAATCAACTAAACGTGTGAAAGTAGTGGAGGCTCCTGGAGTGCCTACATCATTAGATTTTGAGGAAAGGGGACATGGCAATAGACTTCATTCCATTAAGAGTACTACAACCGGGGAGGAATTTGTAGACGAAAAAAAAGAGAATGTGTTTGGAACACAATTAGTTCCATATGGTCACAACTTTGAGGAGATTATATGCGAACATCCTAATGATGTCATGGAGCAAGATAATGTCACAACTGAGATTGAAATTAATTGTGACCAATCAGAGGGTGCTGCGAAAACACCACAACGACAATCTGAACAGAAAGAAACACAACAAACAGTGGGGCCAAAACGTCCAAGGGTAGTTGAGGAAAAAAACATTGTGAAGAGAAAGGATAAAGTTACGAAG

Protein sequence

RIMIRVKLPVKREERRRRSTSRPIYKQKREKTNVITLSSYDTNQSTKRVKVVEAPGVPTSLDFEERGHGNRLHSIKSTTTGEEFVDEKKENVFGTQLVPYGHNFEEIICEHPNDVMEQDNVTTEIEINCDQSEGAAKTPQRQSEQKETQQTVGPKRPRVVEEKNIVKRKDKVTK

Homology

The following BLAST results are available for this feature:

BLAST of Lsi05G006490 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006490 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006490 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006490 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006490.1	Lsi05G006490.1	mRNA