Lsi05G006330 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	YL1_C domain-containing protein
Location	chr05: 7781553 .. 7781759 (-)
RNA-Seq Expression	Lsi05G006330
Synteny	Lsi05G006330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTATAACTGAAAAATCTAGGGCTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAACGACTTCGACACTGGTGTTTGA

mRNA sequence

ATGGATGGTATAACTGAAAAATCTAGGGCTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAACGACTTCGACACTGGTGTTTGA

Coding sequence (CDS)

ATGGATGGTATAACTGAAAAATCTAGGGCTGTGACGAAGAATCTATCGCCATGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGCGATCGTATCAAGTGCGAGTCTCAAATACAAGCCTTCAAGTCTTCTTGCTCCCTAAAGAAACCAAATCCATCTTTGCAATCTGGAAGGAACGACTTCGACACTGGTGTTTGA

Protein sequence

MDGITEKSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQSGRNDFDTGV

Homology

[Close]

BLAST of Lsi05G006330 vs. ExPASy TrEMBL
Match: A0A0A0L2G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MDGITEKSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQSG 60
          MDGITEKSRAVTKN SPCDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK NPSLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RNDFDTGV 69
          RNDFDTGV
Sbjct: 61 RNDFDTGV 68

[Close]

BLAST of Lsi05G006330 vs. ExPASy TrEMBL
Match: A0A067EDM2 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035370mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 5  TEKSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQSGRNDF 64
          T +S    K +SPCDVEAL+KCL+EN GD +KC+SQI+AFKSSCSLKKP+ SL+S +  F
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES-KQQF 63

Query: 65 DTGV 69
          ++GV
Sbjct: 64 NSGV 66

[Close]

BLAST of Lsi05G006330 vs. ExPASy TrEMBL
Match: A0A2H5NN95 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_057110 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 5  TEKSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQSGRNDF 64
          T +S    K +SPCDVEAL+KCL+EN GD +KC+SQI+AFKSSCSLKKP+ SL+S +  F
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES-KQQF 63

Query: 65 DTGV 69
          ++GV
Sbjct: 64 NSGV 66

[Close]

BLAST of Lsi05G006330 vs. ExPASy TrEMBL
Match: A0A5N6RFC3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 7  KSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQS 60
          +S +  K +SPCDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPN S +S
Sbjct: 6  ESNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQES 58

[Close]

BLAST of Lsi05G006330 vs. ExPASy TrEMBL
Match: A0A5N6RHF1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 7  KSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQS 60
          +S +  K +SPCDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPN S +S
Sbjct: 6  ESNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQES 58

[Close]

BLAST of Lsi05G006330 vs. NCBI nr
Match: KAE8650146.1 (hypothetical protein Csa_010997, partial [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MDGITEKSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQSG 60
          MDGITEKSRAVTKN SPCDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK NPSLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RNDFDT 67
          RNDFDT
Sbjct: 61 RNDFDT 66

[Close]

BLAST of Lsi05G006330 vs. NCBI nr
Match: KDO52000.1 (hypothetical protein CISIN_1g035370mg [Citrus sinensis] >GAY41135.1 hypothetical protein CUMW_057110 [Citrus unshiu])

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-13
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 5  TEKSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQSGRNDF 64
          T +S    K +SPCDVEAL+KCL+EN GD +KC+SQI+AFKSSCSLKKP+ SL+S +  F
Sbjct: 4  TAESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLES-KQQF 63

Query: 65 DTGV 69
          ++GV
Sbjct: 64 NSGV 66

[Close]

BLAST of Lsi05G006330 vs. NCBI nr
Match: KAF3954648.1 (hypothetical protein CMV_020027 [Castanea mollissima] >KAF3976702.1 hypothetical protein CMV_000104 [Castanea mollissima])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 7  KSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQS 60
          +S  V K +SPCDVEAL+KCL+EN GD +KC+SQI+AFKSSCS+KKPNPS +S
Sbjct: 6  ESNTVKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSIKKPNPSQES 58

[Close]

BLAST of Lsi05G006330 vs. NCBI nr
Match: KAE8077725.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 7  KSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQS 60
          +S +  K +SPCDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPN S +S
Sbjct: 6  ESNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQES 58

[Close]

BLAST of Lsi05G006330 vs. NCBI nr
Match: KAE8077726.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 7  KSRAVTKNLSPCDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNPSLQS 60
          +S +  K +SPCDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPN S +S
Sbjct: 6  ESNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQES 58

The following BLAST results are available for this feature:

BLAST of Lsi05G006330 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2G8	5.6e-27	91.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1	[more]
A0A067EDM2	1.2e-13	62.50	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035370mg PE=4 SV=1	[more]
A0A2H5NN95	1.2e-13	62.50	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_057110 PE=4 SV=1	[more]
A0A5N6RFC3	6.1e-13	69.81	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1	[more]
A0A5N6RHF1	6.1e-13	69.81	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1	[more]

BLAST of Lsi05G006330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650146.1	2.2e-25	90.91	hypothetical protein Csa_010997, partial [Cucumis sativus]	[more]
KDO52000.1	2.5e-13	62.50	hypothetical protein CISIN_1g035370mg [Citrus sinensis] >GAY41135.1 hypothetical...	[more]
KAF3954648.1	5.6e-13	69.81	hypothetical protein CMV_020027 [Castanea mollissima] >KAF3976702.1 hypothetical...	[more]
KAE8077725.1	1.3e-12	69.81	hypothetical protein FH972_016259 [Carpinus fangiana]	[more]
KAE8077726.1	1.3e-12	69.81	hypothetical protein FH972_016259 [Carpinus fangiana]	[more]

BLAST of Lsi05G006330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36856	OS07G0175200 PROTEIN	coord: 1..67
None	No IPR available	PANTHER	PTHR36856:SF1	OS07G0175200 PROTEIN	coord: 1..67
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 14..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006330.1	Lsi05G006330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0019787	ubiquitin-like protein transferase activity