Lsi05G006290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor ILR3-like
Location	chr05: 7768870 .. 7771113 (+)
RNA-Seq Expression	Lsi05G006290
Synteny	Lsi05G006290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCTTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTTCCGGCTTCTCCTGGTCTATGAATCCGCTCAACGGCTCCTCCAATGTCAGGTTTCATTTCGTTTCAATTTTGTTCGATTTTCCTGTTCTATCCGTTCATAATCATATATTTCTGCTGACCCTGTAATCGGACTATGTGTATATGGACTTTTAATTGGGATCTAGGATTGCTACACCTATAGCTTAAAAGCAGTTTCTGTAGTTCTCTGGTCTCATCTCATCAAGAGAATATTACTTTTTCTTGCATCATCTGATTTAGAAGTTGGAAGCTTAAGACTTCGATCTTGTTACTTCGAGTTTGATAATCAGAAGATTTGTATCTGCATCTTCAATTTTCCTTTTCTCCTTAAGTTTTAGAACTAATTTATGAACTTGAAGTGTTTGCGTTTGAGAAAAGTTGAGATGCCTCGCTAGTTCTTCATGTTCTTCGATTTCTGGTCGAAGATTGTAGGTTTGAAATTTGCAGTATAAATTTATTAAATTTTATTTTATCTAACTGAGTAACTGATTCATTTTCATCCTATAGCTTATTCAAAGTCATTTTCTCTTGTTGACTAAATAAATAATAAGAAATTTCCCCTTTCAAGTATTGTTTCAAACCATTTTCCCCCTTTAACTAGGTACGTAATTGGGAAGTTCTTTTTACTCATGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATACTATGTTATAAATAACCTTAAAATGTAATTATTTTAAATAGGGAAACTTTGTATGATCTTTATTTTGAATTTTTTGAAATGTAACTTTCTCTTATGGTCTGTACTATTTTCATGTTAGATATGAAATTTTTTATTACTTTCTTTCACTCTGCTGTCTCTTATGTATATATGTATACTTCGAGGAAAGATAATTTGATCAACGTAGAGGGTCTGGCTTATTTAACCAACCTCAGGAGGAACTTGTCGTTTACCTGTCTTTCATGACTTCATTTCCTCAACTTTATTTCCCTAATTGCTTAGCTAGCATCTATGAATTGTCAATCTTTTTAATATTATTTCAACAACGAATACTACTAGTATGTTAACAGAGAGATTGCCAATGCACTTATATATACAGTTCTTCCTGTGATTGTGCCTCTTGCCTATGATATGGAACATTGACCAAAACTTTTGTTCACTGTCTTAGTGTCTTTGAACGGTATTCATTTTTTAAATATGTTATTGCATTGAGTATTAAAAAAAAAAAAAAAAATCCCTCTCTCTTCCCCCATCGGCATTTTTTTTTCTGTTATGGTGGTTGGTAGGGGGGGCTATCATTTTGCATTTACTCATTAAACTTTTTCCTCCATCTTTTACTAGCACGGAAATTGAAGGATCATTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGTAA

mRNA sequence

ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCTTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTTCCGGCTTCTCCTGGTCTATGAATCCGCTCAACGGCTCCTCCAATGATTGCTACACCTATAGCTTAAAAGCAGTTTCTGTAGTTCTCTGGTCTCATCTCATCAAGAGAATATTACTTTTTCTTGCATCATCTGATTTAGAAGTTGGAAGCTTAAGACTTCGATCTTGTTACTTCGAGTTTGATAATCAGAAGATTTTTCTTCATGTTCTTCGATTTCTGGTCGAAGATTGTAGCTTATTCAAAGTACGGAAACTTTATATGAAATTTTTTATTACTTTCTTTCACTCTGCTGTCTCTTATGTATATATGTATACTTCGAGGAAAGATAATTTGATCAACGTAGAGGAGAGATTGCCAATGCACTTATATATACAGTTCTTCCTCACGGAAATTGAAGGATCATTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGTAA

Coding sequence (CDS)

ATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCTTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTTCCGGCTTCTCCTGGTCTATGAATCCGCTCAACGGCTCCTCCAATGATTGCTACACCTATAGCTTAAAAGCAGTTTCTGTAGTTCTCTGGTCTCATCTCATCAAGAGAATATTACTTTTTCTTGCATCATCTGATTTAGAAGTTGGAAGCTTAAGACTTCGATCTTGTTACTTCGAGTTTGATAATCAGAAGATTTTTCTTCATGTTCTTCGATTTCTGGTCGAAGATTGTAGCTTATTCAAAGTACGGAAACTTTATATGAAATTTTTTATTACTTTCTTTCACTCTGCTGTCTCTTATGTATATATGTATACTTCGAGGAAAGATAATTTGATCAACGTAGAGGAGAGATTGCCAATGCACTTATATATACAGTTCTTCCTCACGGAAATTGAAGGATCATTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGTAA

Protein sequence

MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSNDCYTYSLKAVSVVLWSHLIKRILLFLASSDLEVGSLRLRSCYFEFDNQKIFLHVLRFLVEDCSLFKVRKLYMKFFITFFHSAVSYVYMYTSRKDNLINVEERLPMHLYIQFFLTEIEGSLLESDGLKEPGSKKR

Homology

[Close]

BLAST of Lsi05G006290 vs. ExPASy TrEMBL
Match: A0A6J1JAV0 (transcription factor ILR3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483303 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYALMDDIPV+DANFS PT+GFSWSM PLN SSN
Sbjct: 1  MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPPLNASSN 45

[Close]

BLAST of Lsi05G006290 vs. ExPASy TrEMBL
Match: A0A6J1J7N3 (transcription factor ILR3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483303 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYALMDDIPV+DANFS PT+GFSWSM PLN SSN
Sbjct: 1  MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPPLNASSN 45

[Close]

BLAST of Lsi05G006290 vs. ExPASy TrEMBL
Match: A0A6J1F1H1 (transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111438485 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-13
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYALMDDIPV+DANFS PT+GFSWSM  LN SSN
Sbjct: 1  MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPTLNASSN 45

[Close]

BLAST of Lsi05G006290 vs. ExPASy TrEMBL
Match: A0A6J1DL34 (transcription factor ILR3 OS=Momordica charantia OX=3673 GN=LOC111022098 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.6e-12
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYALMDDIPV+D NFS  ++GFSWSM  LNGSSN
Sbjct: 1  MVSPETTNWLFDYALMDDIPVTDGNFSGASTGFSWSMPALNGSSN 45

[Close]

BLAST of Lsi05G006290 vs. ExPASy TrEMBL
Match: A0A6J1IQF0 (transcription factor ILR3-like OS=Cucurbita maxima OX=3661 GN=LOC111478488 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPV-SDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYAL+DDIPV  DANFS PT+GFSWSM P N SS+
Sbjct: 1  MVSPETTNWLFDYALIDDIPVPDDANFSAPTAGFSWSMQPFNASSD 46

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: XP_038905787.1 (transcription factor ILR3 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-14
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPET+NWLFDYALMDDIPVSDANFS PT+GFSWS+ PLNGSSN
Sbjct: 1  MVSPETSNWLFDYALMDDIPVSDANFSAPTTGFSWSITPLNGSSN 45

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: XP_022985260.1 (transcription factor ILR3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYALMDDIPV+DANFS PT+GFSWSM PLN SSN
Sbjct: 1  MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPPLNASSN 45

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: XP_022985261.1 (transcription factor ILR3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYALMDDIPV+DANFS PT+GFSWSM PLN SSN
Sbjct: 1  MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPPLNASSN 45

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: XP_022932170.1 (transcription factor ILR3-like [Cucurbita moschata] >KAG6577439.1 Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-13
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYALMDDIPV+DANFS PT+GFSWSM  LN SSN
Sbjct: 1  MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPTLNASSN 45

[Close]

BLAST of Lsi05G006290 vs. NCBI nr
Match: KAG7015510.1 (Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-13
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MVSPETTNWLFDYALMDDIPVSDANFSPPTSGFSWSMNPLNGSSN 46
          MVSPETTNWLFDYALMDDIPV+DANFS PT+GFSWSM  LN SSN
Sbjct: 1  MVSPETTNWLFDYALMDDIPVADANFSAPTAGFSWSMPTLNASSN 45

The following BLAST results are available for this feature:

BLAST of Lsi05G006290 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAV0	2.9e-14	88.89	transcription factor ILR3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1J7N3	2.9e-14	88.89	transcription factor ILR3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1F1H1	2.5e-13	86.67	transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111438485 PE=...	[more]
A0A6J1DL34	4.6e-12	82.22	transcription factor ILR3 OS=Momordica charantia OX=3673 GN=LOC111022098 PE=4 SV...	[more]
A0A6J1IQF0	1.8e-11	80.43	transcription factor ILR3-like OS=Cucurbita maxima OX=3661 GN=LOC111478488 PE=4 ...	[more]

BLAST of Lsi05G006290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905787.1	2.7e-14	88.89	transcription factor ILR3 [Benincasa hispida]	[more]
XP_022985260.1	6.0e-14	88.89	transcription factor ILR3-like isoform X1 [Cucurbita maxima]	[more]
XP_022985261.1	6.0e-14	88.89	transcription factor ILR3-like isoform X2 [Cucurbita maxima]	[more]
XP_022932170.1	5.1e-13	86.67	transcription factor ILR3-like [Cucurbita moschata] >KAG6577439.1 Transcription ...	[more]
KAG7015510.1	5.1e-13	86.67	Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi05G006290 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006290.1	Lsi05G006290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity