Lsi05G006180 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006180
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Xanthine/uracil permease family protein
Location	chr05: 7616886 .. 7618384 (+)
RNA-Seq Expression	Lsi05G006180
Synteny	Lsi05G006180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCAGCCACCTCAAGAATCTGCATTTTCAACCAGGAGAATCAGTGCCAAACGACGTCGTTTCACGAGGATAGTAATTGGAGTTCTTCTTCCTCCATGGACGATCTTCTCATGTTCGACATTTACAGTAGTACAACTTATTCAAATCACCATAATAATGTTGTATTTTCTTCTTCTTCTTATGAGTATTTTGAAACTCGCATTTGTTGTTCATCCGCCGTTGACGGCGGAGCTCAGCCTTCTGCTTCCTCCTTCCAACGGAAGCGGAGGAAGATGGCGGCCGATGATGATCTTGAAGATACTGCAACTTCTCCTCCTCATCCTTCCATAGTTTCCAAGGTATTTTCTTTAGCCATGGAAAATATATATATATATATATATATATATATCGCGGGTTTAATGGAAGAAAATCCAATTTGTTATATGTTTATTTAAATAAACATATAACAAATTGGATTTTCTTCCATTAAACCCGCGATATATATATATATATATCTATATATATATTCAATGTGCTACTATTATATATGGCTGATTTATTTTGGCTCTGTTGGATCACTATTTGAATTTTTTTTTTATTTTTGAAAATTAAATTTTTATACAGAATTAGTTTCTTTGATTTGTTAATCTACTTTTTGACAAATAATTTTAGAAATTTAAGTCAAACTTTTTCAAAACTAATTAGTTATTTTTGAAATTTCACTAAAAATTTAAACGTTTCTTTGAAAAAGATACGAGAATAATTGTTGAGAAATGGTGAGTTAACAAGATTAATTTTAAAAAACAATATCTGCATGTTTGATTTTTGAAAATTGTAATTGTTTTCCCACATTTTTTTTAATCATGATTTTTATATATATTTTCTAGGTAAACATTTAAAATTCTCAACCAAAATTTAAAAATAAAAATAAGTTAATTTTTTGTTTTCATTTCAAATTTTGGCTTGAACTTTGAAACATACAACAAAATATAGAAATTAACAGATAGAAGTAGGTGTTTATTGGTTGAATTTTGAAAAACAAAAACCAAAAAATCAAATAGTTATCAGATAGGACTTTAATAACCATTGAACGTAAAAATTTAAAAATCCACATATTCTCTAATTAATAATTAAACCTACTAAATATAAATTTGAAGTAATTTTGCATCATAGATCGACCTCCTCTAATGATTTCTCATGGTTAATTTGGTATTTTAATCAGATGGGTCAGCTTAGTTCTAAGCAAAAGAAGAAGCAGAGGGCAATGATCAATCAAACAAAACAAAAGGTAATTTCTAATTCTTTATCTAAAAATTAATGTGGATTTTTGACATTAGAAATTAATTTATTTTTGTAGGGAAAAGGAAGTGATGAAGACAATGGGGAGGTTGAAGATAGAATAATTGAAGTGGGTTTTATGGGGAGGGATAATAAGAATTATTGTAGCACAGGGCTTAAGAATATTGGCCTTTGTTTAGTTCCTCTATCCATGGCTCTCAATTATTTTGCTTAG

mRNA sequence

ATGGAAAACTCAGCCACCTCAAGAATCTGCATTTTCAACCAGGAGAATCAGTGCCAAACGACGTCGTTTCACGAGGATAGTAATTGGAGTTCTTCTTCCTCCATGGACGATCTTCTCATGTTCGACATTTACAGTAGTACAACTTATTCAAATCACCATAATAATGTTGTATTTTCTTCTTCTTCTTATGAGTATTTTGAAACTCGCATTTGTTGTTCATCCGCCGTTGACGGCGGAGCTCAGCCTTCTGCTTCCTCCTTCCAACGGAAGCGGAGGAAGATGGCGGCCGATGATGATCTTGAAGATACTGCAACTTCTCCTCCTCATCCTTCCATAGTTTCCAAGGGAAAAGGAAGTGATGAAGACAATGGGGAGGTTGAAGATAGAATAATTGAAGTGGGTTTTATGGGGAGGGATAATAAGAATTATTGTAGCACAGGGCTTAAGAATATTGGCCTTTGTTTAGTTCCTCTATCCATGGCTCTCAATTATTTTGCTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCACCTCAAGAATCTGCATTTTCAACCAGGAGAATCAGTGCCAAACGACGTCGTTTCACGAGGATAGTAATTGGAGTTCTTCTTCCTCCATGGACGATCTTCTCATGTTCGACATTTACAGTAGTACAACTTATTCAAATCACCATAATAATGTTGTATTTTCTTCTTCTTCTTATGAGTATTTTGAAACTCGCATTTGTTGTTCATCCGCCGTTGACGGCGGAGCTCAGCCTTCTGCTTCCTCCTTCCAACGGAAGCGGAGGAAGATGGCGGCCGATGATGATCTTGAAGATACTGCAACTTCTCCTCCTCATCCTTCCATAGTTTCCAAGGGAAAAGGAAGTGATGAAGACAATGGGGAGGTTGAAGATAGAATAATTGAAGTGGGTTTTATGGGGAGGGATAATAAGAATTATTGTAGCACAGGGCTTAAGAATATTGGCCTTTGTTTAGTTCCTCTATCCATGGCTCTCAATTATTTTGCTTAG

Protein sequence

MENSATSRICIFNQENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSSSSYEYFETRICCSSAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVSKGKGSDEDNGEVEDRIIEVGFMGRDNKNYCSTGLKNIGLCLVPLSMALNYFA

Homology

[Close]

BLAST of Lsi05G006180 vs. ExPASy TrEMBL
Match: A0A5D3BKS2 (Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00160 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.8e-54
Identity = 125/189 (66.14%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 1   MENSATSRICIFNQENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSS 60
           MENSA SRIC   +E++C+ T FHED +WS+SSSMDDLLMFD+ S+             S
Sbjct: 1   MENSANSRICSHGEEDRCEAT-FHEDPSWSTSSSMDDLLMFDVRST-----------IHS 60

Query: 61  SSYEYFETRICCSSAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVS------ 120
           SSYE+F+TR+CCSSAVDGGAQ SASSF+ KRRKMAADDDLEDTATSPPHPSIVS      
Sbjct: 61  SSYEFFQTRLCCSSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPS 120

Query: 121 ----------------KGKGSDEDNGEVEDRIIEVGFMGRD-NKNYCSTGLKNIGLCLVP 167
                           KGKGS ED GEVEDRII+VG +GRD NKNYCSTGLKNIGLCLVP
Sbjct: 121 SKQQKKQRATINQTKHKGKGS-EDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVP 176

[Close]

BLAST of Lsi05G006180 vs. ExPASy TrEMBL
Match: A0A1S3CKU1 (uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.8e-54
Identity = 125/189 (66.14%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 1   MENSATSRICIFNQENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSS 60
           MENSA SRIC   +E++C+ T FHED +WS+SSSMDDLLMFD+ S+             S
Sbjct: 1   MENSANSRICSHGEEDRCEAT-FHEDPSWSTSSSMDDLLMFDVRST-----------IHS 60

Query: 61  SSYEYFETRICCSSAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVS------ 120
           SSYE+F+TR+CCSSAVDGGAQ SASSF+ KRRKMAADDDLEDTATSPPHPSIVS      
Sbjct: 61  SSYEFFQTRLCCSSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPS 120

Query: 121 ----------------KGKGSDEDNGEVEDRIIEVGFMGRD-NKNYCSTGLKNIGLCLVP 167
                           KGKGS ED GEVEDRII+VG +GRD NKNYCSTGLKNIGLCLVP
Sbjct: 121 SKQQKKQRATINQTKHKGKGS-EDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVP 176

[Close]

BLAST of Lsi05G006180 vs. ExPASy TrEMBL
Match: A0A0A0L2F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 124/189 (65.61%), Postives = 138/189 (73.02%), Query Frame = 0


Query: 1   MENSATSRICIFNQENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSS 60
           MENSATSRIC   +E+ C+   FHED +WS+SSSMDDLLMFD+ ++T            S
Sbjct: 1   MENSATSRICSHREEDTCE-PMFHEDRSWSTSSSMDDLLMFDVRTTT-----------HS 60

Query: 61  SSYEYFETRICCSSAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVS------ 120
           SSYE F+T +CCSSAVDGGAQPSASSF+ KRRKMAADDDLEDTATSPPHPSIVS      
Sbjct: 61  SSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERS 120

Query: 121 ----------------KGKGSDEDNGEVEDRIIEVGFMGRD-NKNYCSTGLKNIGLCLVP 167
                           KG GS ED GEVEDRI EVGF+GRD NKN+CSTGLKNIGLCLVP
Sbjct: 121 SKQQKKQRAMMNQTKHKGNGS-EDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVP 176

[Close]

BLAST of Lsi05G006180 vs. ExPASy TrEMBL
Match: A0A5A7TU96 (Xanthine/uracil permease family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00030 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 5   ATSRICIFNQENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSSSSYE 64
           A  +IC   +E++C+ T FHED +WS+SSSMDDLLMFD+ S+             SSSYE
Sbjct: 71  ACGQICC-RREDRCEAT-FHEDPSWSTSSSMDDLLMFDVRST-----------IHSSSYE 130

Query: 65  YFETRICCSSAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVSK 116
           +F+TR+CCSSAVDGGAQPSASSF+ K+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 131 FFQTRLCCSSAVDGGAQPSASSFRLKQRKMAADDDLEDTATSPPHPSIVSK 168

[Close]

BLAST of Lsi05G006180 vs. ExPASy TrEMBL
Match: A0A5A7V6T3 (Xan_ur_permease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00650 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.3e-28
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 14  QENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSSSSYEYFETRICCS 73
           +E++C+ T FHED +WS+SSSMDDLLMFD+ S+             SSSYE+F+TR+CCS
Sbjct: 115 EEDRCEAT-FHEDPSWSTSSSMDDLLMFDVRST-----------IHSSSYEFFQTRLCCS 174

Query: 74  SAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVSK 116
           SAVDGGAQPSASSF+ K+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 175 SAVDGGAQPSASSFRLKQRKMAADDDLEDTATSPPHPSIVSK 204

[Close]

BLAST of Lsi05G006180 vs. NCBI nr
Match: XP_008463437.1 (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo] >TYK00353.1 putative CTD small phosphatase-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53
Identity = 125/189 (66.14%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 1   MENSATSRICIFNQENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSS 60
           MENSA SRIC   +E++C+ T FHED +WS+SSSMDDLLMFD+ S+             S
Sbjct: 1   MENSANSRICSHGEEDRCEAT-FHEDPSWSTSSSMDDLLMFDVRST-----------IHS 60

Query: 61  SSYEYFETRICCSSAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVS------ 120
           SSYE+F+TR+CCSSAVDGGAQ SASSF+ KRRKMAADDDLEDTATSPPHPSIVS      
Sbjct: 61  SSYEFFQTRLCCSSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPS 120

Query: 121 ----------------KGKGSDEDNGEVEDRIIEVGFMGRD-NKNYCSTGLKNIGLCLVP 167
                           KGKGS ED GEVEDRII+VG +GRD NKNYCSTGLKNIGLCLVP
Sbjct: 121 SKQQKKQRATINQTKHKGKGS-EDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVP 176

[Close]

BLAST of Lsi05G006180 vs. NCBI nr
Match: XP_011652737.2 (uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical protein Csa_009500 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 2.3e-52
Identity = 124/189 (65.61%), Postives = 138/189 (73.02%), Query Frame = 0


Query: 1   MENSATSRICIFNQENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSS 60
           MENSATSRIC   +E+ C+   FHED +WS+SSSMDDLLMFD+ ++T            S
Sbjct: 1   MENSATSRICSHREEDTCE-PMFHEDRSWSTSSSMDDLLMFDVRTTT-----------HS 60

Query: 61  SSYEYFETRICCSSAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVS------ 120
           SSYE F+T +CCSSAVDGGAQPSASSF+ KRRKMAADDDLEDTATSPPHPSIVS      
Sbjct: 61  SSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERS 120

Query: 121 ----------------KGKGSDEDNGEVEDRIIEVGFMGRD-NKNYCSTGLKNIGLCLVP 167
                           KG GS ED GEVEDRI EVGF+GRD NKN+CSTGLKNIGLCLVP
Sbjct: 121 SKQQKKQRAMMNQTKHKGNGS-EDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVP 176

[Close]

BLAST of Lsi05G006180 vs. NCBI nr
Match: KAA0047143.1 (Xanthine/uracil permease family protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 4.0e-28
Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 5   ATSRICIFNQENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSSSSYE 64
           A  +IC   +E++C+ T FHED +WS+SSSMDDLLMFD+ S+             SSSYE
Sbjct: 71  ACGQICC-RREDRCEAT-FHEDPSWSTSSSMDDLLMFDVRST-----------IHSSSYE 130

Query: 65  YFETRICCSSAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVSK 116
           +F+TR+CCSSAVDGGAQPSASSF+ K+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 131 FFQTRLCCSSAVDGGAQPSASSFRLKQRKMAADDDLEDTATSPPHPSIVSK 168

[Close]

BLAST of Lsi05G006180 vs. NCBI nr
Match: TYK14734.1 (putative nucleobase-ascorbate transporter 10 [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-28
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 14  QENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSSSSYEYFETRICCS 73
           +E++C+ T FHED +WS+SSSMDDLLMFD+ S+             SSSYE+F+TR+CCS
Sbjct: 115 EEDRCEAT-FHEDPSWSTSSSMDDLLMFDVRST-----------IHSSSYEFFQTRLCCS 174

Query: 74  SAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVSK 116
           SAVDGGAQPSASSF+ K+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 175 SAVDGGAQPSASSFRLKQRKMAADDDLEDTATSPPHPSIVSK 204

[Close]

BLAST of Lsi05G006180 vs. NCBI nr
Match: KAA0061379.1 (Xan_ur_permease domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-28
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 14  QENQCQTTSFHEDSNWSSSSSMDDLLMFDIYSSTTYSNHHNNVVFSSSSYEYFETRICCS 73
           +E++C+ T FHED +WS+SSSMDDLLMFD+ S+             SSSYE+F+TR+CCS
Sbjct: 115 EEDRCEAT-FHEDPSWSTSSSMDDLLMFDVRST-----------IHSSSYEFFQTRLCCS 174

Query: 74  SAVDGGAQPSASSFQRKRRKMAADDDLEDTATSPPHPSIVSK 116
           SAVDGGAQPSASSF+ K+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 175 SAVDGGAQPSASSFRLKQRKMAADDDLEDTATSPPHPSIVSK 204

The following BLAST results are available for this feature:

BLAST of Lsi05G006180 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKS2	7.8e-54	66.14	Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CKU1	7.8e-54	66.14	uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=...	[more]
A0A0A0L2F7	1.1e-52	65.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1	[more]
A0A5A7TU96	1.9e-28	66.67	Xanthine/uracil permease family protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V6T3	4.3e-28	69.61	Xan_ur_permease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Lsi05G006180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463437.1	1.6e-53	66.14	PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo] >TYK00353.1 putat...	[more]
XP_011652737.2	2.3e-52	65.61	uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical ...	[more]
KAA0047143.1	4.0e-28	66.67	Xanthine/uracil permease family protein [Cucumis melo var. makuwa]	[more]
TYK14734.1	8.9e-28	69.61	putative nucleobase-ascorbate transporter 10 [Cucumis melo var. makuwa]	[more]
KAA0061379.1	8.9e-28	69.61	Xan_ur_permease domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Lsi05G006180 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..125
None	No IPR available	PANTHER	PTHR33974:SF2	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 1..123 coord: 120..165
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 1..123 coord: 120..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006180.1	Lsi05G006180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006865	amino acid transport
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006269	DNA replication, synthesis of RNA primer
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0010089	xylem development
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003896	DNA primase activity
molecular_function	GO:0015293	symporter activity