Lsi05G006140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein LHCP TRANSLOCATION DEFECT
Location	chr05: 7581041 .. 7583401 (+)
RNA-Seq Expression	Lsi05G006140
Synteny	Lsi05G006140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTTGTATCACTACCCTCCTAGAGAGATGGCTTCCAGCTTTCATCTCTGTCAAGATTTATCCAACGTCCAATATCTCTTCTGCAATCCCATACACATTGGCCCACCGGATATCGAGTGGATGGATAGAACCTGCAAGAGTGCGATAGCAGAAGCTCATTTTCCTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAATTGCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCTCCATTGGACCTTCCAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCTGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGGTTCTTTTACTAATTACTCTCTTCTTTCTTCGTATTTTGTGGGTTTCTTGTTATTGTCTTTGGGGACTGTGATTGTTGAAAAGCAGGTGTTTTGTGTTTCATTGCTGGTTTGGGGTTGATTCTTATGGTTTTGGAAGTTTAAATTGTTCTTACCCTCTTGTTGTTCTGTTTTCTTTTAGAAGTATTGTGAATTTGTAATGACTCCCTAGGGAAGCTAGATGAAGGGATTTAAATGGAGAGATTTTTGTATGGATGATCCTCCTCTAGCGGTGTTAATGCAGAATGACCTACCCCTAAAAAACTAATGAAAACTAACCTTTTGCTTAGCACTTAATTGCTTGGAACTCAGTATCACATTAGGGATGTCTCACCCATCGAGAAATGGTTGTAGCCCTAACTTGATGTTATGTCAATCGCAATATTGAGTTTCAGTGCGCAAGGATGAACGATACTGAGTTTCAGGCGGTTAAATATTTTATGACATAAGCAAAAAGTAGTTTTCATTGGTTTTTTAGGAGTGAGTCATTCTGCATATTAACATTGTTTTGAGAGAGTCATTCGTATAAAAATCTCTTTAAATTCATCACTCAAAATAAGAATGGCCTTTGTCATATGAGATTGTGAGGAAGGGGACCTTAAACATTATAACCCACCTCATAACTTGTGCATTTGTGTATTAAACTCTGCTTTCACATAATGAAACTAAAACAAGGTCCATTGCCATTATGAAAATGCATAAAACTTCCTACTTCCGTTCCTACTTCCCTCAAACAAAACTTAGCAAACATTACTGATTTGCTGTAGCCTTTAGGTAAGGGAAGAATCAAAAGTTCCCTTCATCCTTGTGCTCCTTTTACTTTGAAACCCTGCTGAATCACCTTGTCCATAGTTTAAAAACTCGACCGAATCACATTTTCCTTACTACCTCTCAACACCTTTTTTAAGCATTCATAAAGTCAATCTAAACAGGCTCCTAGTATATAACTCGAAGAGAGAAATACAGCGGATGAACAATGAAGACCCACAAATATAGTGGCTTGATTTGACTCGAACTGCATTGGTCATGACTTTAGAGTTAAGATGACTCCCATTGTGTCAAGCTTTTCAAATAGATGTATCATGACGAACAATAATGTTAACCATCATGGGTTGGCCTAATAGAAAATAAAGGGCTAGGAGGGGATGAGTTCAATCCATGTTGAACACCTACTTAGGATTTAATATCCTACGAGTTTCCTTGACACCTAAATGTTGTAGGGTCAGGCGAGTTGTTCCATGAGATTAGTTAGTAGCGTAAGCTGGTCCGGACTCTCAGATATCTAAAAAAAATGATGAACAAATAATATTCCAACATGTTGCCATCCCAAATTAGATACAGAAAAAGTCTACTTTTGGTGTTCTTAATCCAATCATTCATTATAGGTAAACTCAACTAGTTTATGATAGCATGTCTTGTATAATTAGTTAATGAGTATCATGGTATTAAAGTTACAACTTGTCACATATTCTATACGATAAAATCTTAATCTAAGTATTCATCTTAAAAGCGAGATTATGTCGATACTTTTCGAGTCAATTGTGAATACCAAAAACTCTGAACCATGACCTTGACATCAAGGAAAAAGGAGGATTGACAAATGAACAATTTTGGTTGTGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA

mRNA sequence

ATGAAAAACCTGCAAGAGTGCGATAGCAGAAGCTCATTTTCCTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAATTGCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCTCCATTGGACCTTCCAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCTGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA

Coding sequence (CDS)

ATGAAAAACCTGCAAGAGTGCGATAGCAGAAGCTCATTTTCCTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAATTGCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCTCCATTGGACCTTCCAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCTGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA

Protein sequence

MKNLQECDSRSSFSSYKTCTNSAMASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

Homology

[Close]

BLAST of Lsi05G006140 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.0e-55
Identity = 111/173 (64.16%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 22  SAMASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNL 81
           S+  S SC  S+  +  S  S  P  L S+ LG ++    + P  +GPSNGSR TCWF  
Sbjct: 3   SSSISFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKF 62

Query: 82  RQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 141
            +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILL
Sbjct: 63  GKNGVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILL 122

Query: 142 MLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           MLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDRA +EEI+D IL +S +KA
Sbjct: 123 MLAATEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]

BLAST of Lsi05G006140 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 104/172 (60.47%), Postives = 123/172 (71.51%), Query Frame = 0


Query: 24  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFN 83
           MAS+ CT  ++    S ++    +   +    LG     R  + V    S     TC+F 
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPRAAARLGWLRPSRLSAVVPASESGRVGPTCFFK 60

Query: 84  L-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 143
              ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDILLM
Sbjct: 61  FGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDILLM 120

Query: 144 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           LAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+   A
Sbjct: 121 LAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of Lsi05G006140 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 104/172 (60.47%), Postives = 123/172 (71.51%), Query Frame = 0


Query: 24  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFN 83
           MAS+ CT  ++    S ++    +   +    LG     R  + V    S     TC+F 
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPRAAARLGWLRPSRLSAVVPASESGRVGPTCFFK 60

Query: 84  L-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLM 143
              ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDILLM
Sbjct: 61  FGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDILLM 120

Query: 144 LAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           LAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+   A
Sbjct: 121 LAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]

BLAST of Lsi05G006140 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.3e-84
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 24  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQ 83
           MASLSCT+SINLTPRSFNSRPP KLGS  LGLQS+LRW+SPVSIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 84  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 143
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 144 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFILNFS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of Lsi05G006140 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.6e-82
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 24  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQ 83
           MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 84  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 143
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 144 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of Lsi05G006140 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.6e-82
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 24  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQ 83
           MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 84  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 143
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 144 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of Lsi05G006140 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81
Identity = 156/168 (92.86%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 24  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLR 83
           MAS+SCT TSINL+P SFNSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 84  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 143
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 144 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK 191
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Lsi05G006140 vs. ExPASy TrEMBL
Match: A0A6J1EVN2 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.6e-81
Identity = 155/168 (92.26%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 24  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLR 83
           MAS+SCT TSINL+P S NSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 84  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 143
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 144 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK 191
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Lsi05G006140 vs. NCBI nr
Match: XP_038903413.1 (protein LHCP TRANSLOCATION DEFECT [Benincasa hispida])

HSP 1 Score: 320.9 bits (821), Expect = 7.7e-84
Identity = 159/168 (94.64%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 24  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQ 83
           MASLSCT S+NLTPRSFNSRPP KL SQ LGLQS+LRWVSPV+IGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTNSMNLTPRSFNSRPPFKLSSQFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQ 60

Query: 84  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 143
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 144 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILN SVK A
Sbjct: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNLSVKNA 168

[Close]

BLAST of Lsi05G006140 vs. NCBI nr
Match: XP_004152919.1 (protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical protein Csa_010871 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 24  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQ 83
           MASLSCT+SINLTPRSFNSRPP KLGS  LGLQS+LRW+SPVSIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 84  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 143
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 144 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFILNFS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]

BLAST of Lsi05G006140 vs. NCBI nr
Match: XP_008463435.1 (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa] >TYK02597.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 3.2e-82
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 24  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQ 83
           MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 84  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 143
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 144 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]

BLAST of Lsi05G006140 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 312.0 bits (798), Expect = 3.6e-81
Identity = 156/168 (92.86%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 24  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLR 83
           MAS+SCT TSINL+P SFNSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 84  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 143
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 144 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK 191
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Lsi05G006140 vs. NCBI nr
Match: XP_022932181.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata])

HSP 1 Score: 309.7 bits (792), Expect = 1.8e-80
Identity = 155/168 (92.26%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 24  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLR 83
           MAS+SCT TSINL+P S NSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 84  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 143
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 144 SEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK 191
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]

BLAST of Lsi05G006140 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 215.3 bits (547), Expect = 4.2e-56
Identity = 111/173 (64.16%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 22  SAMASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNL 81
           S+  S SC  S+  +  S  S  P  L S+ LG ++    + P  +GPSNGSR TCWF  
Sbjct: 3   SSSISFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKF 62

Query: 82  RQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILL 141
            +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILL
Sbjct: 63  GKNGVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILL 122

Query: 142 MLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA 192
           MLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDRA +EEI+D IL +S +KA
Sbjct: 123 MLAATEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

The following BLAST results are available for this feature:

BLAST of Lsi05G006140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY88	6.0e-55	64.16	Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV...	[more]
A2YLX7	3.0e-46	60.47	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ...	[more]
A3BKF2	3.0e-46	60.47	Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT...	[more]

BLAST of Lsi05G006140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L309	8.3e-84	94.05	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078...	[more]
A0A5D3BT07	1.6e-82	93.45	Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3CJ75	1.6e-82	93.45	protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S...	[more]
A0A6J1JAV9	1.7e-81	92.86	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE...	[more]
A0A6J1EVN2	8.6e-81	92.26	protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 ...	[more]

BLAST of Lsi05G006140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903413.1	7.7e-84	94.64	protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]	[more]
XP_004152919.1	1.7e-83	94.05	protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical pro...	[more]
XP_008463435.1	3.2e-82	93.45	PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protei...	[more]
XP_022985270.1	3.6e-81	92.86	protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]	[more]
XP_022932181.1	1.8e-80	92.26	protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]	[more]

BLAST of Lsi05G006140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50900.1	4.2e-56	64.16	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 113..190 e-value: 1.7E-6 score: 29.7
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 113..184
IPR044242	Protein LHCP TRANSLOCATION DEFECT-like	PANTHER	PTHR47317	PROTEIN LHCP TRANSLOCATION DEFECT	coord: 24..191
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006140.1	Lsi05G006140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma