Lsi05G006060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G006060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein of unknown function (DUF3511)
Location	chr05: 7520848 .. 7521177 (-)
RNA-Seq Expression	Lsi05G006060
Synteny	Lsi05G006060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGCTCCACCACCATCCAAACAAGGGTGGTCGGAGCCTGGAAGTCATAGACGTGAGAAAATTGAGTGAAAACAAGATGTACTTAAATCAGTCGCAAAAACGAGCTATTGTTGACCCATCATTTGTGAAACGACATGTGACCAAGACACCAGAATCGTCAAAAAATTCGACAAAGAAGTCGTGGTGGAAGAAACCAGAATTGAAGAGACGACGACGTGTTGCAAAGTACAAATTGTATGCAGTTGAAGGGAAGGTTAAGAATTCCATAAAGAAAGGGATCAGGTGGTTCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

mRNA sequence

ATGGAAGGGCTCCACCACCATCCAAACAAGGGTGGTCGGAGCCTGGAAGTCATAGACGTGAGAAAATTGAGTGAAAACAAGATGTACTTAAATCAGTCGCAAAAACGAGCTATTGTTGACCCATCATTTGTGAAACGACATGTGACCAAGACACCAGAATCGTCAAAAAATTCGACAAAGAAGTCGTGGTGGAAGAAACCAGAATTGAAGAGACGACGACGTGTTGCAAAGTACAAATTGTATGCAGTTGAAGGGAAGGTTAAGAATTCCATAAAGAAAGGGATCAGGTGGTTCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

Coding sequence (CDS)

ATGGAAGGGCTCCACCACCATCCAAACAAGGGTGGTCGGAGCCTGGAAGTCATAGACGTGAGAAAATTGAGTGAAAACAAGATGTACTTAAATCAGTCGCAAAAACGAGCTATTGTTGACCCATCATTTGTGAAACGACATGTGACCAAGACACCAGAATCGTCAAAAAATTCGACAAAGAAGTCGTGGTGGAAGAAACCAGAATTGAAGAGACGACGACGTGTTGCAAAGTACAAATTGTATGCAGTTGAAGGGAAGGTTAAGAATTCCATAAAGAAAGGGATCAGGTGGTTCAAAACCAAGTGTAGCAGAATTATATCTGGGTTTTGA

Protein sequence

MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTKKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF

Homology

[Close]

BLAST of Lsi05G006060 vs. ExPASy TrEMBL
Match: A0A0A0L7N5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077700 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 90/109 (82.57%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTK 60
           MEGLHHHPNKGGRSLEVIDVRKLS NK+YLNQSQ+R +VDPSFVK++VTKT E SK+  K
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 61  KSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           K WWKKPE++RR+RVAKYKLY VEGKVK SIKKGIRW KTKCSRIISGF
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of Lsi05G006060 vs. ExPASy TrEMBL
Match: A0A5D3BTT8 (DUF3511 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00370 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTK 60
           MEGLHHH NKGGRSLEV+DVRKLSENKMYLNQSQ+R +VDPSFVKR+VTKT E SK   K
Sbjct: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSK--MK 60

Query: 61  KSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           KSWWKKPE+KRR+RVAKYKLYAVEGKVK+SIKKG RW KTKCSRIISGF
Sbjct: 61  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

[Close]

BLAST of Lsi05G006060 vs. ExPASy TrEMBL
Match: A0A6J1DCB3 (uncharacterized protein LOC111019023 OS=Momordica charantia OX=3673 GN=LOC111019023 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-35
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPS-FVKRHVTKTPESSKNST 60
           MEG+H  P KGGRSLE+IDVR LSENK+ L+QS+ RA VDPS   KR   K P  S  S+
Sbjct: 1   MEGIHRRPKKGGRSLEIIDVRNLSENKLSLSQSRSRAAVDPSPSTKRQAIKKPSESSKSS 60

Query: 61  KKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
            KSWWK PE+KRRRRVAKYKLY VEGKVKNSIKKGI+WFKT+CSRI+SGF
Sbjct: 61  VKSWWKNPEMKRRRRVAKYKLYTVEGKVKNSIKKGIKWFKTRCSRIMSGF 110

[Close]

BLAST of Lsi05G006060 vs. ExPASy TrEMBL
Match: A0A5D3BBI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1159G00320 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.3e-32
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVK-RHVTKTPESSKNST 60
           ME +H  PNKG R+L++IDVRKLSENKM+LNQS++ + +DPS +K R +  T ESSK ST
Sbjct: 3   MERVHRRPNKGDRNLKIIDVRKLSENKMHLNQSRRHSTIDPSSMKPRAIKTTSESSKAST 62

Query: 61  KKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
            K WWK  E+KRRRRVAKYKLY VEG+VK SI+KGI WFK +C+RIISGF
Sbjct: 63  VKLWWKNSEMKRRRRVAKYKLYTVEGRVKESIRKGINWFKCRCTRIISGF 112

[Close]

BLAST of Lsi05G006060 vs. ExPASy TrEMBL
Match: A0A0A0LL30 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123580 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.4e-29
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKT-PESSKNST 60
           MEG+H  PNKG R+L +IDVRKLSENK++LNQS +++ ++PS VK    KT  ESSK S 
Sbjct: 39  MEGVHRRPNKGDRNLRIIDVRKLSENKIHLNQSGRQSTMNPSSVKPRGMKTASESSKTSG 98

Query: 61  KKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
            KSW KK E+KRRRRVAKYKLY VEGKVK+SI+KGI WFK K +RI+SGF
Sbjct: 99  GKSWGKKLEVKRRRRVAKYKLYTVEGKVKDSIRKGINWFKCKYTRIMSGF 148

[Close]

BLAST of Lsi05G006060 vs. NCBI nr
Match: KGN56136.1 (hypothetical protein Csa_009524 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 2.2e-43
Identity = 90/109 (82.57%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTK 60
           MEGLHHHPNKGGRSLEVIDVRKLS NK+YLNQSQ+R +VDPSFVK++VTKT E SK+  K
Sbjct: 1   MEGLHHHPNKGGRSLEVIDVRKLSVNKVYLNQSQRRTVVDPSFVKQYVTKTSEPSKSCMK 60

Query: 61  KSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           K WWKKPE++RR+RVAKYKLY VEGKVK SIKKGIRW KTKCSRIISGF
Sbjct: 61  KPWWKKPEMRRRQRVAKYKLYGVEGKVKRSIKKGIRWIKTKCSRIISGF 109

[Close]

BLAST of Lsi05G006060 vs. NCBI nr
Match: KAA0033960.1 (DUF3511 domain protein [Cucumis melo var. makuwa] >TYK02584.1 DUF3511 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 4.9e-43
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTK 60
           MEGLHHH NKGGRSLEV+DVRKLSENKMYLNQSQ+R +VDPSFVKR+VTKT E SK   K
Sbjct: 1   MEGLHHHQNKGGRSLEVMDVRKLSENKMYLNQSQRRTVVDPSFVKRYVTKTWEPSK--MK 60

Query: 61  KSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           KSWWKKPE+KRR+RVAKYKLYAVEGKVK+SIKKG RW KTKCSRIISGF
Sbjct: 61  KSWWKKPEMKRRQRVAKYKLYAVEGKVKSSIKKGFRWIKTKCSRIISGF 107

[Close]

BLAST of Lsi05G006060 vs. NCBI nr
Match: XP_022151002.1 (uncharacterized protein LOC111019023 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-35
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPS-FVKRHVTKTPESSKNST 60
           MEG+H  P KGGRSLE+IDVR LSENK+ L+QS+ RA VDPS   KR   K P  S  S+
Sbjct: 1   MEGIHRRPKKGGRSLEIIDVRNLSENKLSLSQSRSRAAVDPSPSTKRQAIKKPSESSKSS 60

Query: 61  KKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
            KSWWK PE+KRRRRVAKYKLY VEGKVKNSIKKGI+WFKT+CSRI+SGF
Sbjct: 61  VKSWWKNPEMKRRRRVAKYKLYTVEGKVKNSIKKGIKWFKTRCSRIMSGF 110

[Close]

BLAST of Lsi05G006060 vs. NCBI nr
Match: KAG6600771.1 (hypothetical protein SDJN03_06004, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 76/109 (69.72%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 2   EGLHHHP-NKGGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNSTK 61
           EG+HHHP N    SLE +D  KLS+N MYLNQ QKR I+  SFVKRH+ KT ESSK ST 
Sbjct: 5   EGIHHHPHNSTDWSLEPMDENKLSDNNMYLNQPQKRVIISSSFVKRHIIKTSESSKRST- 64

Query: 62  KSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           +SWWK P++KRRRRVAKY+ Y VEGKVK+SIKKGI+W KTKCSRII GF
Sbjct: 65  RSWWKNPKIKRRRRVAKYRFYTVEGKVKSSIKKGIKWLKTKCSRIIFGF 112

[Close]

BLAST of Lsi05G006060 vs. NCBI nr
Match: KAG7017168.1 (hypothetical protein SDJN02_22280, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-32
Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MEGLHHHPNK-GGRSLEVIDVRKLSENKMYLNQSQKRAIVDPSFVKRHVTKTPESSKNST 60
           MEG+H  P+K GGRSLEVIDVRKLSEN+++L+QS++ A +DPS VK  V KT E S+  +
Sbjct: 1   MEGVHRRPSKGGGRSLEVIDVRKLSENQVHLSQSRRPAAMDPSAVKPRVVKTGEGSRGGS 60

Query: 61  KKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
             SWWK PE+KR+RRVAKYKLY VEG+VK+SIKKG+RWFK++CSRI+ GF
Sbjct: 61  GNSWWKNPEMKRQRRVAKYKLYTVEGRVKDSIKKGMRWFKSRCSRIVYGF 110

[Close]

BLAST of Lsi05G006060 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 68.2 bits (165), Expect = 4.8e-12
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 54  SSKNSTKKSWWKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISG 109
           SS ++  K WW  PE+KR+RRVAKYKLY+ EGK+K +++K  +W K +CS+II G
Sbjct: 69  SSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of Lsi05G006060 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 68  ELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISGF 110
           E+KR++R+A+YK Y VEGKVK+++K G RW K KC +I+  F
Sbjct: 69  EMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of Lsi05G006060 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 22/59 (37.29%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 50  KTPESSKNSTKKSW-WKKPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIIS 108
           + P+  ++S+  SW +  P+L+R++RV  Y+ Y VEGK+K S +K  +W K KC+++++
Sbjct: 58  QNPKKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]

BLAST of Lsi05G006060 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 51.6 bits (122), Expect = 4.6e-07
Identity = 39/114 (34.21%), Postives = 53/114 (46.49%), Query Frame = 0


Query: 1   MEGLHHHPNKGGRSLEVIDVRKLSENKMY----LNQSQKRAIVDPSFVKRHVTKTPESSK 60
           M+G   HP    R+L V     +   K Y      Q        P F          +SK
Sbjct: 1   MDGFGSHP----RTLAVDQWMDIVNGKGYGVGGTTQVYSTRPDSPKFQPSIPPPPGSTSK 60

Query: 61  NSTKKSWWK--KPELKRRRRVAKYKLYAVEGKVKNSIKKGIRWFKTKCSRIISG 109
             T  + W+    E KR++R+A YK YA+EGKVK+++KKG  W K + S II G
Sbjct: 61  TRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of Lsi05G006060 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 33  SQKRAIVDPSFVKRHVTKTPESSKNSTKKSWWK---KPELKRRRRVAKYKLYAVEGKVKN 92
           S   A  +P+ V R  +       N  KK  +K   + E++R++RVA Y +Y VEG+VK 
Sbjct: 48  STYNAYQNPTIV-RDDSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKG 107

Query: 93  SIKKGIRWFKTKCSRIISG 109
           S+KK  +WFK  CS  + G
Sbjct: 108 SMKKSFKWFKETCSNAVYG 125

The following BLAST results are available for this feature:

BLAST of Lsi05G006060 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G006060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7N5	1.1e-43	82.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077700 PE=4 SV=1	[more]
A0A5D3BTT8	2.4e-43	85.32	DUF3511 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9...	[more]
A0A6J1DCB3	2.4e-35	71.82	uncharacterized protein LOC111019023 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D3BBI7	9.3e-32	66.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LL30	7.4e-29	66.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123580 PE=4 SV=1	[more]

BLAST of Lsi05G006060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56136.1	2.2e-43	82.57	hypothetical protein Csa_009524 [Cucumis sativus]	[more]
KAA0033960.1	4.9e-43	85.32	DUF3511 domain protein [Cucumis melo var. makuwa] >TYK02584.1 DUF3511 domain pro...	[more]
XP_022151002.1	4.9e-35	71.82	uncharacterized protein LOC111019023 [Momordica charantia]	[more]
KAG6600771.1	1.3e-32	69.72	hypothetical protein SDJN03_06004, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017168.1	5.1e-32	66.36	hypothetical protein SDJN02_22280, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi05G006060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05725.1	4.8e-12	54.55	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	1.1e-08	54.76	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	2.1e-07	37.29	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	4.6e-07	34.21	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	6.0e-07	37.97	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 64..108 e-value: 7.2E-23 score: 80.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..66
None	No IPR available	PANTHER	PTHR33193:SF13	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 9..109
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 9..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G006060.1	Lsi05G006060.1	mRNA