Lsi05G005970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Location	chr05: 7400728 .. 7403990 (+)
RNA-Seq Expression	Lsi05G005970
Synteny	Lsi05G005970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCACACAACTTTCACTCATTGGTTTTCTAGTGAAAGAGAAGAGATGGGTGGTATTTAAGGGTGAGGATGATCCAACGTCAATTCCAGGTAAGCATTTATGGACCTTTGTTTAAGACTTAAGAGTTAAGAGAAGGGCTTTGTTATTCGAATCATTTGGTTATTTCATTTTTAATTCAGGGTTTAAGATGTATACCAGTTTTGGGAACTTGAATGATTATTAACATGAGTTGGGTATGTAGTTTAGGAGGGATCAAACATGCTGTTGATAGGTTTTTCTGATGATGATTGCTTATATTTCATTGCTGCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACCCCAGAGGTAACTCAATAATAACTTCCATGACCAACTGATCCATACATCCCACTTGATTGATCAGAAGACTGGTGATTGGTGTGCTACACATGATTTGATATTTAGATAGTTCTTTTGCCATTGTCTTCAGGAAATGATTGAGCTAGAAGCTAGGCGTGAACGTGTACGACAAAATGTTGCTCGTATGTTGACTCTTCAATAAAATTTTGCATCTTATTACTTGGTTGTTCATGACAGAACATTTTTTCTACATTATGTATTTGTCATTGTCGACTTCTCTATATCAAAATTGTGACTTGTATACAGGAAGAAAGGTATGAATTGCATTGTACCTGAAATTGCCAAATAGAAAATCACCCAATATATATTTGAAAAATGATTTCCGTAGGAACTGATGATTGACTTTATAATCTTACTTGAGACATTCTTACCAAAGTCTTCTTTCCTGCCTCAGTAGATCTTCTTATTAGATGGTTTATGCTCCCAGTGGGCATTCATATATCTTCACCTTTTTTCTGTAACCATCCTATTTTGATTTTTTATGAGGTATAGAAGCGATTATCATTTGATTAGCAGTTCAGAATTGAATTTTATTTGATACTTTTAGAAGAACCAATATCATTCTCATTCTTTGACTTAACATGGTCTTATTGGAAGTTATCTGTGATCAATTTAGTTCTCAAGAAAGAAGAGATGGAAAGAAACTCAAAAGAAGGCAATTTACGGAAAGTCATCAACACTGGTCAGTTGCTTATTGATTGAAACTCAAGTGCTTGTTACACTTGTAGAATATAGCTAATATTCATTTGCTGCATAGGTCAAGTTGCAGGTCCCAACTTGAAAAGCTTTATTCGACAGTTCCCAACAGGTTCAGAAGGTATCATTTGATTTAATTATGTATTTTCTTATCCCCTTAATTCCCTCCCCACGTCCTCCCAAGGGAAAAGAAATGTCTTTACATCAAACCTTGAATAGGATTTTGTTAAGGGCCATTGAGATCAATGTTTTAAAAGGCTATTGAGATCAATGTTTTAAGAAGCTATTGAGATTTATGCCCCCTTGAGGCTCACCCTGATGCAAGGCTTTAACTTTTAACCTCAAGGCTTATGCCTCTGAAAATGCACCAAAGCTTAATGATTCGAATACTAATATTAATTTGCCACATTCTTCAAACACATAAAAGGTCTGATTTGTGATAATTTGAGCTATTATTTTACTACAAGAAACAACTTCTCATTGGAAAAGGAATTAATGCTAAGGTTACAAATTCTGAGTCTTGAAGGAAGTGAAAATAAAAGACAGAAAACACAAAATCAGAAACTTTGAAACAATTACAATCCTCTTCCTAATGCACATTAATTTGAGCTGTTACTAATTTCATACTGTGCGTCCGTGCCTTTAAAAGCATTAAAAACATCAATTTATAGTATAAGTCGATCTTATAATAATAGTAGTGATATTGATGTTAAAGATATCCTATTACAATTTTTGTTGAAGTGGCAATCGACAATGGTGATTATGTGTGTGTGTATATACATACACTTTTATATGACTATGATATTTAGTAATACCCAGTCATACCAATTTAGGATTTGAGATTGAAAGTCAGGCTTCCTATTTTTATCACTTCGGAAAAAAGCATTTGATTTCAAATAATCATTTAGAATGATCTAAGTTTTTTCTCTTGTTGGTTGATTACTTTCATGTACTTCTTCTGGTCACGAGTACCTCTCTCTCTCTCCCAAATTGTTAGTTGTTCATTCCATTTGGATCTGAGTATATTTTATTGATTGGATGCTTATACTCAGTTCATTCATTTTGGTATTTCTTGTACAAAAGGTGCCCAAGATGTGGAAGGATTGACTACAAGGGATAGCCTGAGGTGGGTCATTCATTTTGAATTTTATACTGCTATTTTCTTTATTGTTGAGGTGACATAAATATTAGTTAACTGCCAACTTTTTTCTCAATGTTATAGCAGAAATATTAAAATGTACTTTTCTATGTAGTTCACCGATGCCATTTCTCTATTTATTTTCTGCTCAATACTGCTCACATTGGTCCAATGTGCTAGGAGTTTGAGTTAAGGGGCTGTTTGGGAGACTGGAATGTAATCAGGATTACTGGGAATATGAGGGGTGATGGAATGAGTGAGGAATTGAGGGCGGAATGGAAATAGGATTGTGAAGTGTGAAAACGGTAGGAAAGAGGGTTGAATTGAAAACTTTGGGAACAAAATGAGTTTAGTATTACAAATCGGGCCCAAAACGCTCAATCCAAACATGGACTTTGGATTACATTACATTACAAGCTCATTCCATTACAGACCTCCAAATAGCCCCTAATAGTTTAAATGGTTCAAAGGACCAAGACTTGAGAGCAAATCTATATTGCCGAATGACTTATTGATTGTTAATTTGTTATTCTTTTTGAGTTTGCTAGTTAATGAATATTAGGGTCGTTTTACCATTGATTTGCTGGTAAAAACATCTAAAAGTTTCCGGCGCAATGTGCTTATGTTTAAAGAACTGTTCCTCTTGTAATGTGGATTTACCTTTGCTTCAACCACCAGGAACTCAAACAAAAAGGAGGCAGTTAAAGAGAAACCAATTCCAGAGTAAGTTGATTTTTCTTTCTGCCAGCTTCCGTGCTTGTCAAGGGCTCTCACTCAATTTAAAAGTCATAAATGTCAATATTAGATTGCATAAGATTCTTGTTGATATTAGATACAAGAGATTATGAAAGTTGGCTTATCTTTTACATTTACAGAAAAAAAAAAAAAAAAAAAAAAAGAAAAGGTGCATCCTGAATGTATCAAAAAGTTACCATTCTTTCATATTCAGGTCCTCCGAGCCCGTTGGGTCTGGCCAAACATTTAGACCAGGAACATGGCAGCCACCAACATGA

mRNA sequence

CTCACACAACTTTCACTCATTGGTTTTCTAGTGAAAGAGAAGAGATGGGTGGTATTTAAGGGTGAGGATGATCCAACGTCAATTCCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACCCCAGAGGAAATGATTGAGCTAGAAGCTAGGCGTGAACGTGTACGACAAAATGTTGCTCAAGAACCAATATCATTCTCATTCTTTGACTTAACATGGTCTTATTGGAAGTTATCTGTGATCAATTTAGTTCTCAAGAAAGAAGAGATGGAAAGAAACTCAAAAGAAGGCAATTTACGGAAAGTCATCAACACTGGTCAAGTTGCAGGTCCCAACTTGAAAAGCTTTATTCGACAGTTCCCAACAGGTTCAGAAGGTGCCCAAGATGTGGAAGGATTGACTACAAGGGATAGCCTGAGGTCCTCCGAGCCCGTTGGGTCTGGCCAAACATTTAGACCAGGAACATGGCAGCCACCAACATGA

Coding sequence (CDS)

CTCACACAACTTTCACTCATTGGTTTTCTAGTGAAAGAGAAGAGATGGGTGGTATTTAAGGGTGAGGATGATCCAACGTCAATTCCAGTGGAATGGATATGTTGGTTAAATGGGCAGCGTAAAAAGGCTCCAACCCCAGAGGAAATGATTGAGCTAGAAGCTAGGCGTGAACGTGTACGACAAAATGTTGCTCAAGAACCAATATCATTCTCATTCTTTGACTTAACATGGTCTTATTGGAAGTTATCTGTGATCAATTTAGTTCTCAAGAAAGAAGAGATGGAAAGAAACTCAAAAGAAGGCAATTTACGGAAAGTCATCAACACTGGTCAAGTTGCAGGTCCCAACTTGAAAAGCTTTATTCGACAGTTCCCAACAGGTTCAGAAGGTGCCCAAGATGTGGAAGGATTGACTACAAGGGATAGCCTGAGGTCCTCCGAGCCCGTTGGGTCTGGCCAAACATTTAGACCAGGAACATGGCAGCCACCAACATGA

Protein sequence

LTQLSLIGFLVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPISFSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSEGAQDVEGLTTRDSLRSSEPVGSGQTFRPGTWQPPT

Homology

[Close]

BLAST of Lsi05G005970 vs. ExPASy TrEMBL
Match: A0A5A7SS01 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00330 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.7e-56
Identity = 119/170 (70.00%), Postives = 127/170 (74.71%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           ++KEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEM+ELEARRERVRQNVA     
Sbjct: 37  IMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVA----- 96

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKKEEMERNSKEG LRK+I+TGQV GP+LKSFIRQ PTGSE
Sbjct: 97  ------------------LLKKEEMERNSKEGKLRKIISTGQVMGPDLKSFIRQVPTGSE 156

Query: 130 GAQDVEGLTTRDSLR---------------SSEPVGSGQTFRPGTWQPPT 165
           GAQDVEGL TRD+LR               SSEPVGSG TFRPGTWQPPT
Sbjct: 157 GAQDVEGLPTRDTLRNSNEKEPVQEKPIPESSEPVGSGHTFRPGTWQPPT 183

[Close]

BLAST of Lsi05G005970 vs. ExPASy TrEMBL
Match: A0A0A0L526 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis sativus OX=3659 GN=Csa_3G077630 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.8e-56
Identity = 119/170 (70.00%), Postives = 127/170 (74.71%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           ++KEKRWV+FKGEDDPTSIPVEWICWLNGQRKKAPTPEEM ELEARRERVRQNVA     
Sbjct: 37  IMKEKRWVLFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMRELEARRERVRQNVA----- 96

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKKEEMERNSKEGNLRK+I+TGQV GP+LKSFIRQ PTGSE
Sbjct: 97  ------------------LLKKEEMERNSKEGNLRKIISTGQVMGPDLKSFIRQVPTGSE 156

Query: 130 GAQDVEGLTTRDSLR---------------SSEPVGSGQTFRPGTWQPPT 165
           GAQDVEGL TRDSLR               SSEPVGSG TF+PGTWQPPT
Sbjct: 157 GAQDVEGLPTRDSLRNSNEKEADQEKPIPESSEPVGSGHTFKPGTWQPPT 183

[Close]

BLAST of Lsi05G005970 vs. ExPASy TrEMBL
Match: A0A6J1DNE9 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Momordica charantia OX=3673 GN=LOC111022834 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 115/170 (67.65%), Postives = 123/170 (72.35%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           L+KEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEM+ELEARRERVRQNV      
Sbjct: 37  LMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVT----- 96

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKK+EMERNS+EGNLRKVI+  QVAGP+L SFIRQFPTGSE
Sbjct: 97  ------------------LLKKQEMERNSREGNLRKVISADQVAGPDLNSFIRQFPTGSE 156

Query: 130 GAQDVEGLTTRDSLR---------------SSEPVGSGQTFRPGTWQPPT 165
           GAQD EG   R+S R               SSEPVGSGQTFRPGTWQPPT
Sbjct: 157 GAQDEEGSAARNSPRNSKEKEAVKEKPIPESSEPVGSGQTFRPGTWQPPT 183

[Close]

BLAST of Lsi05G005970 vs. ExPASy TrEMBL
Match: A0A6J1JVV8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxima OX=3661 GN=LOC111487996 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.0e-53
Identity = 116/170 (68.24%), Postives = 124/170 (72.94%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           ++KEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEM+ELEARRERVRQNVA     
Sbjct: 37  IMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVA----- 96

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKKEEMER SKE NLRKV++T  VAGPNLKSFIRQFPTGSE
Sbjct: 97  ------------------LLKKEEMERKSKESNLRKVVST--VAGPNLKSFIRQFPTGSE 156

Query: 130 GAQDVEGLTTRDSLR---------------SSEPVGSGQTFRPGTWQPPT 165
           GAQD EG   +DSLR               SSEP+GSGQTFRPGTWQPPT
Sbjct: 157 GAQDNEGSAAKDSLRNSEENEAAKEKPIPESSEPMGSGQTFRPGTWQPPT 181

[Close]

BLAST of Lsi05G005970 vs. ExPASy TrEMBL
Match: A0A6J1FNU8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita moschata OX=3662 GN=LOC111447475 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 5.0e-53
Identity = 116/170 (68.24%), Postives = 124/170 (72.94%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           ++KEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEM+ELEARRERVRQNVA     
Sbjct: 48  IMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVA----- 107

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKKEEMER SKE NLRKV++T  VAGPNLKSFIRQFPTGSE
Sbjct: 108 ------------------LLKKEEMERKSKESNLRKVVST--VAGPNLKSFIRQFPTGSE 167

Query: 130 GAQDVEGLTTRDSLR---------------SSEPVGSGQTFRPGTWQPPT 165
           GAQD EG   +DSLR               SSEP+GSGQTFRPGTWQPPT
Sbjct: 168 GAQDNEGSAAKDSLRNSKENEAAKEQPIPESSEPMGSGQTFRPGTWQPPT 192

[Close]

BLAST of Lsi05G005970 vs. NCBI nr
Match: XP_038903174.1 (uncharacterized protein LOC120089839 isoform X2 [Benincasa hispida])

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-59
Identity = 125/170 (73.53%), Postives = 132/170 (77.65%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           ++KEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEM+ELEARRERVRQNVA     
Sbjct: 37  IMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVA----- 96

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKKEEMERNSKEGNLRK+I+TGQVAGP+LKSFIRQFPTGSE
Sbjct: 97  ------------------LLKKEEMERNSKEGNLRKIISTGQVAGPDLKSFIRQFPTGSE 156

Query: 130 GAQDVEGLTTRDSLR---------------SSEPVGSGQTFRPGTWQPPT 165
           GAQDVEGLTTRDSLR               SSEPVGSGQTFRPGTWQPPT
Sbjct: 157 GAQDVEGLTTRDSLRNSNEKEAVKEKPIPESSEPVGSGQTFRPGTWQPPT 183

[Close]

BLAST of Lsi05G005970 vs. NCBI nr
Match: XP_038903173.1 (uncharacterized protein LOC120089839 isoform X1 [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 9.6e-59
Identity = 125/177 (70.62%), Postives = 132/177 (74.58%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           ++KEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEM+ELEARRERVRQNVA     
Sbjct: 37  IMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVA----- 96

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKKEEMERNSKEGNLRK+I+TGQVAGP+LKSFIRQFPTGSE
Sbjct: 97  ------------------LLKKEEMERNSKEGNLRKIISTGQVAGPDLKSFIRQFPTGSE 156

Query: 130 GAQDVEGLTTRDSL----------------------RSSEPVGSGQTFRPGTWQPPT 165
           GAQDVEGLTTRDSL                      RSSEPVGSGQTFRPGTWQPPT
Sbjct: 157 GAQDVEGLTTRDSLRNSNEKEAVKEKPIPDSHSFTFRSSEPVGSGQTFRPGTWQPPT 190

[Close]

BLAST of Lsi05G005970 vs. NCBI nr
Match: XP_038903176.1 (uncharacterized protein LOC120089839 isoform X4 [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-58
Identity = 125/176 (71.02%), Postives = 131/176 (74.43%), Query Frame = 0


Query: 11  VKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPISF 70
           +KEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEM+ELEARRERVRQNVA      
Sbjct: 1   MKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVA------ 60

Query: 71  SFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSEG 130
                            +LKKEEMERNSKEGNLRK+I+TGQVAGP+LKSFIRQFPTGSEG
Sbjct: 61  -----------------LLKKEEMERNSKEGNLRKIISTGQVAGPDLKSFIRQFPTGSEG 120

Query: 131 AQDVEGLTTRDSL----------------------RSSEPVGSGQTFRPGTWQPPT 165
           AQDVEGLTTRDSL                      RSSEPVGSGQTFRPGTWQPPT
Sbjct: 121 AQDVEGLTTRDSLRNSNEKEAVKEKPIPDSHSFTFRSSEPVGSGQTFRPGTWQPPT 153

[Close]

BLAST of Lsi05G005970 vs. NCBI nr
Match: KAA0033972.1 (NDUFA12 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 7.6e-56
Identity = 119/170 (70.00%), Postives = 127/170 (74.71%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           ++KEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEM+ELEARRERVRQNVA     
Sbjct: 37  IMKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMMELEARRERVRQNVA----- 96

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKKEEMERNSKEG LRK+I+TGQV GP+LKSFIRQ PTGSE
Sbjct: 97  ------------------LLKKEEMERNSKEGKLRKIISTGQVMGPDLKSFIRQVPTGSE 156

Query: 130 GAQDVEGLTTRDSLR---------------SSEPVGSGQTFRPGTWQPPT 165
           GAQDVEGL TRD+LR               SSEPVGSG TFRPGTWQPPT
Sbjct: 157 GAQDVEGLPTRDTLRNSNEKEPVQEKPIPESSEPVGSGHTFRPGTWQPPT 183

[Close]

BLAST of Lsi05G005970 vs. NCBI nr
Match: XP_004152928.1 (uncharacterized protein LOC101214441 isoform X2 [Cucumis sativus] >KGN56129.1 hypothetical protein Csa_010369 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 9.9e-56
Identity = 119/170 (70.00%), Postives = 127/170 (74.71%), Query Frame = 0


Query: 10  LVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPIS 69
           ++KEKRWV+FKGEDDPTSIPVEWICWLNGQRKKAPTPEEM ELEARRERVRQNVA     
Sbjct: 37  IMKEKRWVLFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMRELEARRERVRQNVA----- 96

Query: 70  FSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSE 129
                             +LKKEEMERNSKEGNLRK+I+TGQV GP+LKSFIRQ PTGSE
Sbjct: 97  ------------------LLKKEEMERNSKEGNLRKIISTGQVMGPDLKSFIRQVPTGSE 156

Query: 130 GAQDVEGLTTRDSLR---------------SSEPVGSGQTFRPGTWQPPT 165
           GAQDVEGL TRDSLR               SSEPVGSG TF+PGTWQPPT
Sbjct: 157 GAQDVEGLPTRDSLRNSNEKEADQEKPIPESSEPVGSGHTFKPGTWQPPT 183

[Close]

BLAST of Lsi05G005970 vs. TAIR 10
Match: AT4G26965.1 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit )

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-39
Identity = 88/180 (48.89%), Postives = 108/180 (60.00%), Query Frame = 0


Query: 2   TQLSLIGFLVKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQ 61
           +++  I   VKEKRWV F+ E+DPTSIPVEWICWLNGQRK+APTPEEMIELEARRERV+ 
Sbjct: 29  SRMEEIDGFVKEKRWVKFRREEDPTSIPVEWICWLNGQRKRAPTPEEMIELEARRERVKL 88

Query: 62  NVAQEPISFSFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFI 121
           NVA                       +LKKEE E+ ++ G  RK I  G+V GP+L SF+
Sbjct: 89  NVA-----------------------LLKKEEEEKKARVGTGRK-ITIGKVDGPDLTSFV 148

Query: 122 RQFPTGSEGAQDVEGLTTRDSLR-----------------SSEPVGSGQTFRPGTWQPPT 165
           RQFP  S+G +  E     D  R                 ++EP GSG +FRPGTWQPP+
Sbjct: 149 RQFPPDSKGGEPEEASEEADKSRAKEHEPEIVSAEPPEPKTTEPSGSGSSFRPGTWQPPS 184

[Close]

BLAST of Lsi05G005970 vs. TAIR 10
Match: AT4G26965.2 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit )

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-38
Identity = 86/171 (50.29%), Postives = 104/171 (60.82%), Query Frame = 0


Query: 11  VKEKRWVVFKGEDDPTSIPVEWICWLNGQRKKAPTPEEMIELEARRERVRQNVAQEPISF 70
           +KEKRWV F+ E+DPTSIPVEWICWLNGQRK+APTPEEMIELEARRERV+ NVA      
Sbjct: 1   MKEKRWVKFRREEDPTSIPVEWICWLNGQRKRAPTPEEMIELEARRERVKLNVA------ 60

Query: 71  SFFDLTWSYWKLSVINLVLKKEEMERNSKEGNLRKVINTGQVAGPNLKSFIRQFPTGSEG 130
                            +LKKEE E+ ++ G  RK I  G+V GP+L SF+RQFP  S+G
Sbjct: 61  -----------------LLKKEEEEKKARVGTGRK-ITIGKVDGPDLTSFVRQFPPDSKG 120

Query: 131 AQDVEGLTTRDSLR-----------------SSEPVGSGQTFRPGTWQPPT 165
            +  E     D  R                 ++EP GSG +FRPGTWQPP+
Sbjct: 121 GEPEEASEEADKSRAKEHEPEIVSAEPPEPKTTEPSGSGSSFRPGTWQPPS 147

The following BLAST results are available for this feature:

BLAST of Lsi05G005970 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G005970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SS01	3.7e-56	70.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo va...	[more]
A0A0A0L526	4.8e-56	70.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis sativus...	[more]
A0A6J1DNE9	3.8e-53	67.65	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Momordica chara...	[more]
A0A6J1JVV8	5.0e-53	68.24	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxim...	[more]
A0A6J1FNU8	5.0e-53	68.24	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita mosch...	[more]

BLAST of Lsi05G005970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903174.1	1.5e-59	73.53	uncharacterized protein LOC120089839 isoform X2 [Benincasa hispida]	[more]
XP_038903173.1	9.6e-59	70.62	uncharacterized protein LOC120089839 isoform X1 [Benincasa hispida]	[more]
XP_038903176.1	1.3e-58	71.02	uncharacterized protein LOC120089839 isoform X4 [Benincasa hispida]	[more]
KAA0033972.1	7.6e-56	70.00	NDUFA12 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_004152928.1	9.9e-56	70.00	uncharacterized protein LOC101214441 isoform X2 [Cucumis sativus] >KGN56129.1 hy...	[more]

BLAST of Lsi05G005970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26965.1	6.9e-39	48.89	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]
AT4G26965.2	3.4e-38	50.29	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PFAM	PF05071	NDUFA12	coord: 12..65 e-value: 1.3E-5 score: 26.0
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PANTHER	PTHR12910	NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2	coord: 12..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..164
None	No IPR available	PANTHER	PTHR12910:SF1	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 12	coord: 12..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005970.1	Lsi05G005970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion