Lsi05G005900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	reactive Intermediate Deaminase A, chloroplastic-like
Location	chr05: 7347790 .. 7351807 (-)
RNA-Seq Expression	Lsi05G005900
Synteny	Lsi05G005900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAATAGAAGGAGAAAAATGATTGATTTTGAAAATTGAGGCTAATTTTGATTTGAGGGATAGAGTGCGGGTATGCAATTTTTTCCAAAGGCATAGCTAACAAAACAAAAATTAAGCCGTAGGGTATATATATGTATATCTTTTCAAATTTAGCCAAATGCTATTACTAAACAATAGTTAGCGAGCGGCTGAGTGCGAAGAGTAAGGACAGCAAGACCGAGACGATCAGAGAGAAGAGAAATGGCCTGGTGTGCGGCTCGGACCTTTCACATGCCGGCGTTTGACGTCACTGCACTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGCGCTTCGGTGGCCGGAACCACCTTGTGGCGATCTTCCTCAACTTCCAAGCGCCAAATACCCTTCGCATCCCTCAGCATTTCCACCGATACTAGTACGCTCTCACTTTTCTGCTTTCTCCTTCGCTCTCTGTTTGGTCGTCGATCAAAATTTTGTTACGAATTGTTGATTGCTTTTTTCTGTTTTCATTTACTTTCGTTTTGCCGAAATATCGATGGATTTTGTAGGGTTTTGTTTGTGTTTCAGCTGAGTAGTTATTAAAACTTTGAAATAGGGCATTTCTATGCGATTAGGTTTAACCTTGGTCAGGGAATGTAGTAGATTGACGTTCTTCCCATTTCTAAGTGAGAGAATTTGTAATATCGGGAAATTACTGTAGTTTGTTCGAAATGTACAGCTAACTTTGAGTTCTTTTAATCTTAAATTTAAAAACCTACTTATCAAGTATTGAACATGTTGTTATAGAATGGTTTATTTCTCATAAAAGCTCTTGGGCGTTTGATGAGCGGGAACAAACTTGAGCACTGACATCCTAAATCTACAAAAGTAATTAAAATGAAGATTATTATGGGACATTTAAAATTTTAATTTTATTAAACAGCGTAAACAACTTATGAAAAAATTGGAGAGCTTTTTTCTTTCATAGTCTAGTTGTAGTGGAGTAAATTGTTCTTTGAAGGCTCTTTCTGGATACTTGTAGATGAAAATTCTTCCTTGGGGTTCCAATCCATCACTTTCCCATCTTCCCTCCCACCTGCCTCTTGAAAATCCTCATACAGTTATCAATACTAAAAACAGCATTACTTTTGATCCATCTTCATCTATCAAACGTACTATCTTTTGCCCCGGCATAATACATTCCACGGACTATGTGGCGCAGCCTTCGGATGCCGACACAGATGCTTTCCTTTCTAGCCCCATGCCAACGTCACCTTGTGATTGCAATGGAGAAGATTGGTATGACTATTTTCCTCACCATAGTTATTCTTCTTTCAACCCAGCTTCACATTTGATGGCCTTGGCTCCTTGGTTTAGAGAACTTGGCCTTTGTATAAAGGTGATCCCTGCTTGAAAATAACCGAACCGGTTATCAACAAAGAAAAAAAAGATTGAGAGAGTTGCGTAACCTTGAAAGCTCTATTTCATACGACAAAAAAGCAAAACCTCTGTTTAGAGAGGATTTTACATCAGCATGAATTTGCTCCATAACCCATCTTTTGGTTTGATCGAATCATCACATTGGTTTCTATCGGTCATGGAGTCATTGCAAAGTCAGATCTTCTCCTTTTTTGGTTGTTCATCATCAACTTGTTCCACTTTTGCTATTCAGGGCTTTCTCATTGGTTCTTATTGGCTTTATGTTTTTGGCTTATCTTGTTCTTCATCTGTTATCTCTGGGTTGGCCATCATCCTTTATTTTTTGGGCTTCATTGTATCTATCATATGGTTAATGAAATGCATCTTATCCAAAAAAAAAAAAAAAAAAAAACTTCCTTGGGGGAACAATTGACTGGTTATTCTTTCCTAATTGTTTCTGTTGAATGTTTATAACTGATGTTTATAACCCTGTCCACCCCTTAATATCAACTTCTTGCATGGCAGGTATCAAGGAAGCTGTTCAGACTGACATGGCTCCGGCAGCATTAGGGCCATATTCTCAGGCTATCAAAGCCAACAACCTTCTCTTTGTGTCTGGTTGCCTAGGTCTAAATCCTGAGGTAGCTTCATTTTTTTCTTATTGTTATTTTTTATTTGATTGTGCTTATGAGTGGATCAAGTGGGTTTCTGGATGCCTACTTGAGCATAGCTTGAAAGGTTGAATATTTTTCTATACTTGTAGTGAAATATTAAAAAAAGAAACATAAGGTTGAAGTGGGTTTCTGTGTGTGCGCACGTGCGCATTATTAAGCTGCCTAATGGAATGTGTATTTTCATGTTCTAATGTAGACAGGGAAATTCGTCTCAGATGATGTTGAAGGCCAAACGGAGCAGGTATGTCCATTGATTATGGTGCCTGCTCGTATCATGTCCATGCAGATTAAATGTTTGAGCTGAATATCAAAACTTCTAAGTCAATGAAATTTACAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCAGCTATTCTTCCGTGGTTAAGACAACTATTATGTATGAAATTTTGGCCTCTTTTCTTGATGTCCATACTATCTTTTCTCTGTTAATATCTAAAGTACTAGGGAGCTGTTTGGTAGTTGTTTAAAAAGATGGTTTTATTTACACTTTTGTCTACTGAACCATCACTGCTTACTAGTTATTCTGATCTGAAGGTCCAGATTCTATTTTATGTTTATTCTGTTTATCAAACTTTTTGTCTTACCCTTCCAACATTGTAAGAAAGATCATCTGTCTTTCTTATTAATTTTGTATAATTTATTCAACAGAAACTTGACAAAGTCTATCTTTTGCCAATTTACTTGATGAGTAGATGTCCACGTGAACAAGTATTTGAAGCTAAATCAAGATGTAGTAAGTCATATGTTGGGTGTTCAAAATGGATAAAGACTTTCGTTAAATATAATTGAAAACTAATGTGGGGACTAGAACATTTGAAGTTCGGAGACTTAAAAAAATGGGTATGGAAATTTAAGGACAAAAATAGAATTTAAACCTATTGCAAAAATTGTCATATGTTATCAGAGAAGTACTTATAGAGAGGTTTCCTAGACATTGTTTCCAATCAAATAATTATTCTAAAAGTATTGAGAGCGACTCTCAGAACACTCCCATGTTTTTGTTGTGATTCAGTTTTTTCTTCACAATTTGTCATGCAGGTTGGCTGATCTGAAGGACTTCAAGAAAGTTAATGAGATATATGGTAAATGTAAGTTTCATTAAACTGAATCTCTACTCTCTCTGTTATCAATTGCCGAGCATTGAGCTTTGATGTCTGTATGATCTCTCTGTCTCCATTACAGCTCAACATTAGTTTCTAGGGTACAGTTTATTTGAGTGAATTTGGAAATTACAACTTCAATGAATTTTGTATGTGATTCTACTTGGAGAAAAAGATGAACTTTTCTTTGTAAAAATTTACTTAGTTGTGTGAAATCTACCCACTTGCTGGTTACTTCGATACACTGGTTTGTAGTTTTCTTCTGGGTCTGATAATAATAGGTGGATGTTTCATTTACTGAAGGATAATTGAAGTCATGGTGAATTTATGACTTATCTATGTTGATTTGATATATTCTCTTGAGATAAGAATGTATTCTTCAACGATAAAGTCTGTGATGTCCTCAAATTGACACTGGCTTCATTTTTATAGATTTCAATCTCAAGTTGAGATGGTTTTCACTTTGTTGGCTAATTCTTATTGTAGATTTTCCGGCCCCTGCTCCGGCTCGGTCAACGTATCAGGTTGCAGCATTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATTGCTACGCTGTGAACTCTCTTACCTAATTTCAGGTACCCTAGTTTTCAAGACAGCATAAATTAATAAGATGGAGATATCAATCACAGGAACACCCTAAATCCATTTTGGCTTTTGTATTCCTTGAGGCTTTCTTATTATAGTATTGTAAGCACTTGACATGAAAATCAAAGTTATACGTGCTTTTTGCCACTGAAAATCAAAGTTAGATGAACCATATTGATTGTTGCAGATTA

mRNA sequence

ATAAATAGAAGGAGAAAAATGATTGATTTTGAAAATTGAGGCTAATTTTGATTTGAGGGATAGAGTGCGGGTATGCAATTTTTTCCAAAGGCATAGCTAACAAAACAAAAATTAAGCCGTAGGGTATATATATGTATATCTTTTCAAATTTAGCCAAATGCTATTACTAAACAATAGTTAGCGAGCGGCTGAGTGCGAAGAGTAAGGACAGCAAGACCGAGACGATCAGAGAGAAGAGAAATGGCCTGGTGTGCGGCTCGGACCTTTCACATGCCGGCGTTTGACGTCACTGCACTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGCGCTTCGGTGGCCGGAACCACCTTGTGGCGATCTTCCTCAACTTCCAAGCGCCAAATACCCTTCGCATCCCTCAGCATTTCCACCGATACTAGTATCAAGGAAGCTGTTCAGACTGACATGGCTCCGGCAGCATTAGGGCCATATTCTCAGGCTATCAAAGCCAACAACCTTCTCTTTGTGTCTGGTTGCCTAGGTCTAAATCCTGAGACAGGGAAATTCGTCTCAGATGATGTTGAAGGCCAAACGGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCAGCTATTCTTCCGTGGTTAAGACAACTATTATGTTGGCTGATCTGAAGGACTTCAAGAAAGTTAATGAGATATATGGTAAATATTTTCCGGCCCCTGCTCCGGCTCGGTCAACGTATCAGGTTGCAGCATTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATTGCTACGCTGTGAACTCTCTTACCTAATTTCAGGTACCCTAGTTTTCAAGACAGCATAAATTAATAAGATGGAGATATCAATCACAGGAACACCCTAAATCCATTTTGGCTTTTGTATTCCTTGAGGCTTTCTTATTATAGTATTGTAAGCACTTGACATGAAAATCAAAGTTATACGTGCTTTTTGCCACTGAAAATCAAAGTTAGATGAACCATATTGATTGTTGCAGATTA

Coding sequence (CDS)

ATGGCCTGGTGTGCGGCTCGGACCTTTCACATGCCGGCGTTTGACGTCACTGCACTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGCGCTTCGGTGGCCGGAACCACCTTGTGGCGATCTTCCTCAACTTCCAAGCGCCAAATACCCTTCGCATCCCTCAGCATTTCCACCGATACTAGTATCAAGGAAGCTGTTCAGACTGACATGGCTCCGGCAGCATTAGGGCCATATTCTCAGGCTATCAAAGCCAACAACCTTCTCTTTGTGTCTGGTTGCCTAGGTCTAAATCCTGAGACAGGGAAATTCGTCTCAGATGATGTTGAAGGCCAAACGGAGCAGGTCCTAAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCCAGCTATTCTTCCGTGGTTAAGACAACTATTATGTTGGCTGATCTGAAGGACTTCAAGAAAGTTAATGAGATATATGGTAAATATTTTCCGGCCCCTGCTCCGGCTCGGTCAACGTATCAGGTTGCAGCATTGCCTTTGGATGCTAAGGTTGAAATTGAGTGCATTGCTACGCTGTGA

Protein sequence

MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTDTSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVEIECIATL

Homology

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BLAST of Lsi05G005900 vs. ExPASy Swiss-Prot
Match: Q94JQ4 (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RIDA PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-65
Identity = 138/190 (72.63%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDV-TALRS-KTPL-AVGVGCASVAGTTLWRSSSTSKRQIPFASLSI 60
           M W   R+ + P  D+ TALRS +TPL A GVGCA+ AG +L+R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 61  STDTSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVL 120
           S  +  KE V T+ APAALGPYSQAIKANNL+F+SG LGL PETGKFVS+ VE QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDA 180
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFPAP+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 188
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

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BLAST of Lsi05G005900 vs. ExPASy Swiss-Prot
Match: Q10121 (RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-31
Identity = 66/122 (54.10%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 64  KEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNMGEI 123
           ++ + +  AP A+GPYSQA++A N +++SG LGL+P+TG      VE QT Q LKN+GE+
Sbjct: 41  RQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEV 100

Query: 124 LKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVEIEC 183
           LKA GA Y +VVKTT++L ++ DF  VNE+YG+YF +P PAR+ YQVAALP    VEIE 
Sbjct: 101 LKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEA 160

Query: 184 IA 186
           +A
Sbjct: 161 VA 161

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BLAST of Lsi05G005900 vs. ExPASy Swiss-Prot
Match: P52758 (2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-31
Identity = 62/123 (50.41%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 63  IKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNMGE 122
           I+  + T  AP A+GPYSQA+  +  +++SG +G++P +G+ VS  V  + +Q LKNMGE
Sbjct: 5   IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 64

Query: 123 ILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY +YF +  PAR+ YQVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 124

Query: 183 CIA 186
            +A
Sbjct: 125 AVA 127

[Close]

BLAST of Lsi05G005900 vs. ExPASy Swiss-Prot
Match: P52760 (2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE=1 SV=3)

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-31
Identity = 64/123 (52.03%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 63  IKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNMGE 122
           I++ + T  APAA+GPYSQA++ +  +++SG +GL+P +G+ V   V  + +Q LKN+GE
Sbjct: 5   IRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGE 64

Query: 123 ILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVEIE 182
           ILKA G  +++VVKTT++LAD+ DF  VNEIY  YF    PAR+ YQVAALP  ++VEIE
Sbjct: 65  ILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIE 124

Query: 183 CIA 186
            IA
Sbjct: 125 AIA 127

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BLAST of Lsi05G005900 vs. ExPASy Swiss-Prot
Match: Q9ZKQ6 (RutC family protein jhp_0879 OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=jhp_0879 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-30
Identity = 68/123 (55.28%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 63  IKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNMGE 122
           +KE + + +AP A+GPYSQAI  N+L+FVSG LG++  TG+F   D+  QT Q ++N+  
Sbjct: 1   MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKA 60

Query: 123 ILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVEIE 182
           ILK  G    SVVKTTI+L  L DF  VN IYG YF  P PAR+T+QVA LP DA VEIE
Sbjct: 61  ILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIE 120

Query: 183 CIA 186
            IA
Sbjct: 121 AIA 123

[Close]

BLAST of Lsi05G005900 vs. ExPASy TrEMBL
Match: A0A1S3CJ54 (reactive Intermediate Deaminase A, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103501583 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.0e-91
Identity = 176/187 (94.12%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCA R+FHMPAFDVTALRSKTPLAVGVGC SVAGTTLWRSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
           +SIKEAVQTD APAALGPYSQAIKANNLLFVSG LGLNPETGKFVSD+VE QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFP+PAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. ExPASy TrEMBL
Match: A0A6J1IN69 (reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476753 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.0e-90
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTT  RSSSTSKRQIPFASL ISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
           TSIKEAV+TD APAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDD+EGQTEQVLKNM
Sbjct: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFP+PAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. ExPASy TrEMBL
Match: A0A6J1FUT7 (reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447476 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.6e-90
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTTL RSSSTSKRQIPFASLSISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
            SIKEAV+TD APAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDD+EGQTEQVLKNM
Sbjct: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFP+PAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. ExPASy TrEMBL
Match: A0A0A0L2Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077580 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCAARTFHMPAFDVTALRSK+PLAVGVGC SVAGTTLWRSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
           +SIKEAVQTD APAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDDVE QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGG+SYSSVVKTTIMLADLKDFKKVNEIY KYFP+PAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. ExPASy TrEMBL
Match: A0A6P4APP4 (reactive Intermediate Deaminase A, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107431842 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.2e-79
Identity = 156/187 (83.42%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCAARTF++PA DV ALR++ PLAVGVG ASVAG+ +WRSSS+ KR  PFA L ISTD
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSMKRSAPFACLGISTD 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
           T IKEAV+TD APAALGPYSQAIKANN L+VSG LGL PETGKFVSD+VE QTEQVLKNM
Sbjct: 61  TRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIY KYFP+PAPARSTYQVAALPLDAK+E
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDAKIE 180

Query: 181 IECIATL 188
           IECIA+L
Sbjct: 181 IECIASL 187

[Close]

BLAST of Lsi05G005900 vs. NCBI nr
Match: XP_038903207.1 (reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 355.9 bits (912), Expect = 2.1e-94
Identity = 181/187 (96.79%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQ+PFASL ISTD
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQMPFASLGISTD 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
           TSIKEAVQTD APAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVE QTEQVLKNM
Sbjct: 61  TSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFP+P+PARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPSPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. NCBI nr
Match: XP_008463412.1 (PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 8.3e-91
Identity = 176/187 (94.12%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCA R+FHMPAFDVTALRSKTPLAVGVGC SVAGTTLWRSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
           +SIKEAVQTD APAALGPYSQAIKANNLLFVSG LGLNPETGKFVSD+VE QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFP+PAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. NCBI nr
Match: XP_022976324.1 (reactive Intermediate Deaminase A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 341.7 bits (875), Expect = 4.1e-90
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTT  RSSSTSKRQIPFASL ISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTSKRQIPFASLGISTD 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
           TSIKEAV+TD APAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDD+EGQTEQVLKNM
Sbjct: 61  TSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFP+PAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. NCBI nr
Match: XP_022942433.1 (reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata] >XP_023545861.1 reactive Intermediate Deaminase A, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6600781.1 Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.3 bits (874), Expect = 5.4e-90
Identity = 175/187 (93.58%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTTL RSSSTSKRQIPFASLSISTD
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTSKRQIPFASLSISTD 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
            SIKEAV+TD APAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDD+EGQTEQVLKNM
Sbjct: 61  ASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGGA YSSVVKTTIMLADLKDFKKVNEIYGKYFP+PAPARSTYQVAALPLDAKVE
Sbjct: 121 GEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. NCBI nr
Match: XP_004152932.1 (reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus] >KGN56123.1 hypothetical protein Csa_009669 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 7.0e-90
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSKRQIPFASLSISTD 60
           MAWCAARTFHMPAFDVTALRSK+PLAVGVGC SVAGTTLWRSSSTSKRQIPFASL IST 
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTSKRQIPFASLGISTS 60

Query: 61  TSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNM 120
           +SIKEAVQTD APAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDDVE QTEQVLKNM
Sbjct: 61  SSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVLKNM 120

Query: 121 GEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDAKVE 180
           GEILKAGG+SYSSVVKTTIMLADLKDFKKVNEIY KYFP+PAPARSTY+VA LPLDAKVE
Sbjct: 121 GEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDAKVE 180

Query: 181 IECIATL 188
           IECIATL
Sbjct: 181 IECIATL 187

[Close]

BLAST of Lsi05G005900 vs. TAIR 10
Match: AT3G20390.1 (endoribonuclease L-PSP family protein )

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-66
Identity = 138/190 (72.63%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 1   MAWCAARTFHMPAFDV-TALRS-KTPL-AVGVGCASVAGTTLWRSSSTSKRQIPFASLSI 60
           M W   R+ + P  D+ TALRS +TPL A GVGCA+ AG +L+R SS   R  PFASLS+
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSS---RSPPFASLSV 60

Query: 61  STDTSIKEAVQTDMAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVL 120
           S  +  KE V T+ APAALGPYSQAIKANNL+F+SG LGL PETGKFVS+ VE QTEQVL
Sbjct: 61  SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 120

Query: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPAPAPARSTYQVAALPLDA 180
           KNMGEILKA GA YSSVVKTTIMLADL DFK VNEIY KYFPAP+PARSTYQVAALPL+A
Sbjct: 121 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 180

Query: 181 KVEIECIATL 188
           K+EIECIATL
Sbjct: 181 KIEIECIATL 187

[Close]

BLAST of Lsi05G005900 vs. TAIR 10
Match: AT3G04480.1 (endoribonucleases )

HSP 1 Score: 43.1 bits (100), Expect = 2.8e-04
Identity = 27/100 (27.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 72  APAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEGQTEQVLKNMGEILKAGGASY 131
           AP+ +GPYSQA    ++L ++G LGL+P T    ++    +  Q L N   I ++   S 
Sbjct: 424 APSCIGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSI 483

Query: 132 SSVVKTTIMLADLKDFK-KVNEIYGKYFPAPAPARSTYQV 171
           SS     ++    +  + + N+++ K+      A+S+ +V
Sbjct: 484 SSSAILFVVFCSARTKQSERNQLHEKFVTFLGLAKSSRRV 523

The following BLAST results are available for this feature:

BLAST of Lsi05G005900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JQ4	2.1e-65	72.63	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q10121	1.2e-31	54.10	RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 ...	[more]
P52758	3.4e-31	50.41	2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=...	[more]
P52760	3.4e-31	52.03	2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE...	[more]
Q9ZKQ6	2.2e-30	55.28	RutC family protein jhp_0879 OS=Helicobacter pylori (strain J99 / ATCC 700824) O...	[more]

BLAST of Lsi05G005900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJ54	4.0e-91	94.12	reactive Intermediate Deaminase A, chloroplastic-like OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1IN69	2.0e-90	93.58	reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FUT7	2.6e-90	93.58	reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0L2Z6	3.4e-90	93.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077580 PE=3 SV=1	[more]
A0A6P4APP4	1.2e-79	83.42	reactive Intermediate Deaminase A, chloroplastic OS=Ziziphus jujuba OX=326968 GN...	[more]

BLAST of Lsi05G005900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903207.1	2.1e-94	96.79	reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida]	[more]
XP_008463412.1	8.3e-91	94.12	PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo]	[more]
XP_022976324.1	4.1e-90	93.58	reactive Intermediate Deaminase A, chloroplastic [Cucurbita maxima]	[more]
XP_022942433.1	5.4e-90	93.58	reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata] >XP_023545...	[more]
XP_004152932.1	7.0e-90	93.05	reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus] >KGN56123.1 h...	[more]

BLAST of Lsi05G005900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20390.1	1.5e-66	72.63	endoribonuclease L-PSP family protein	[more]
AT3G04480.1	2.8e-04	27.00	endoribonucleases	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 71..186 e-value: 2.6E-42 score: 143.6
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA	coord: 1..187
IPR006056	RidA family	TIGRFAM	TIGR00004	TIGR00004	coord: 64..186 e-value: 1.3E-50 score: 168.8
IPR035959	RutC-like superfamily	GENE3D	3.30.1330.40		coord: 59..186 e-value: 3.1E-49 score: 168.3
IPR035959	RutC-like superfamily	SUPERFAMILY	55298	YjgF-like	coord: 64..187
None	No IPR available	PANTHER	PTHR11803:SF45	PERCHLORIC ACID SOLUBLE TRANSLATION INHIBITOR-LIKE PROTEIN	coord: 1..187
None	No IPR available	CDD	cd00448	YjgF_YER057c_UK114_family	coord: 79..185 e-value: 8.92592E-46 score: 144.623
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 163..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005900.1	Lsi05G005900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901565	organonitrogen compound catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0019239	deaminase activity