Lsi05G005730 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G005730
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSmall ubiquitin-related modifier
Locationchr05: 7127089 .. 7129908 (-)
RNA-Seq ExpressionLsi05G005730
SyntenyLsi05G005730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAATTCCATCAGTCGTGTAATAGTGTACGTTGGATCAATGAATCCAAGAACGCATCGTGACCGTCGATTTAGAACCTCAAAAATTCCACCCACTTTCCCTTGAAGACTCAGCGTCACATATAGTGCAAAACCAGGCGAAGAGCAATTGCGAGATTTTCCGAACCCTTTTTTTTCATTCTTCGCTTGGACATCGCGAAGATCAAACCCCAGAAATTTTTCCTTCTTCCAACTTCAAATAATGTCGGGCGTTACCAATCAAGAAGAGGACAAGAAGCCCACCGATCAGTCGGCTCATATCAACCTCAAAGTCAAGGGCCAGGTTTCTTCAACTTCCGAACTTTCAGCTTGTTTTCCCTTATGATTTCTTCTATTTCTTCGTGTTTTATCATTTTTCTAGTTGGTGTTGTTCCTTTTTTTAAGTTATGTGAAGTTAGTGTTGCAGGGGAATATGATTTTAAGTTATTTCAATCCATTTGTTACGTTCTATTCTGTAATGGGTTGTGAGAGGAATTTGCATGCTTTTTGCTTGGGATCGTTTTAGTGATTTTGGGGTTTGTTTGTTTTAGTGTGTTCCAGAACTTTTAGATGTATAGTGTAGACATGATTTTCTCTGTTGAGTGTTTATTAGAACTACATGTACTTGTATGATAGGGTATTTCTTTTTTATGAATTTGATGGACTACTAATAGGTTCGTGTTCTTCATTGGGTGAATAATCAGATGCAGTATGGATTGCCAAGGAATGTTCAGCTGTGAATGGTTTTTCTTCAGACTTGTGGCATCTGTTCCCACTTTACTCATCTATTGGGAAACTTTGCATGAAACCTAGAATTTGGACTATAATCCCACTCAATACTCCAAATCCTAACCAATGGGTTAGATCGCAGAACATTTGTTATGCATGTTGCTCTGTACACAATGCTTGGAAGCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATCTATGAGATGTTCGGGCCAGCTTACGCACATCTTGGCTAATTTCAAGGGACAATCCGCCTGACCCTACAATATTTGGGTGTCAAGGAAACACCTAGGACATTAAATCTTAGGTCAGTGGCCACCATAGATTGAACCAATTCTCTCCAAGCCCTTTATCAAACTCATGTTCTTTATTTACCACTAGACCAACTCATGATGGTTCATGCTGGGAAGCTATTAAAGTTGGGATTCTTTCAATCTACATTCTCTCTCTTCTGTCTTGGTTGAATAGACAGTTTTTTCCTTAAGGATGGTCTCTTCATGACTAATTTTGTATTGGGAAGGAGGGAAATGCAGCAATGCTTTGTCTTGCTTTGCCCCGGTCCCTTACGGTTCTTCCATGCTGGGTTTCTAGCTATGTTCTACTTTAATGGATTGGGCATACTTTCTTGTATAGCCCTCTCCAAGTGTTGAGATGTTCAATCAATGAAGTTTTCTCAACTAATGCTAGATTGCTTGATGTGTAGATAGGTTATGGGGTTCGAAGTTCAAACCATATACAACTGTTACAGTAAATTGTCTTTCTTTAAAGTTAAATTGTCTTAAAAATGTGATCTAGCTAGTGGCTTTGTGTGTATTTAGTTTTATCCTCTTATCTGCTGTCCATGTTTTTGTAGGATGGAAATGAAGTTTTCTTCCGGATCAAAAGGAGTACCCAACTGAAGAAGCTAATGAATGCTTACTGTGACAGGCAGTCGGTTGATTTGAACTCCATTGCATTCTTGTTTGACGGCCGCCGACTGCGTGCAGAGCAGACTCCAGAAGAGGTATCGTCATCTCCTTCATTGTGCTCAGACATTAACCCATAATAACTGTTATCTAGTTTCATTTTCATACGTTATTTATTTACCTCACAGCTGGAAATGGAGGATGGAGATGAGATTGATGCAATGCTTCATCAAACTGGAGGTGGAGGTGCTCTTATCTAAGTTAATTTCAAAAACAAAATAGTTCCTAAAACATCATTTGGGAATCTATAATTTTCTTACTACTGCTACTGCTAGTATATGCCTGAACTTCTGCTGCTGGATGTTGCTTTTGTCTATAAATTACGATAACGATTTCTGCCTCTTCCAGTTCTCTAGAAGAGAAAGAGAGACTATGTTGGACTCCTTTATATATGTAAATGCTGTTGATGTGGATTCCTCCTGTTTCATTTTTCTGAGTACATCCTGAAGTTACAATGTGATTATGTTTGGCTTGTGAGTCTTTGTTCCCGAGACATGAAACTTTCAAAAGGTAAAATAACAGTACTTGTGAAGGAACTTCAAAGATAAGATCTACAGGGTTTCACCAAGAAGGATTGATTCTGCTAAGTGCCAACTGTACTCGAAGCTTGGGAAGCTAATAAGTATATTGTTTCTCTATTCACAGATAGCCACTGCCCTGATGTTCTAAAAAGTCCCAAAATCATGAAGGAAACGAAGAAGCTTTTGGTATAGGTTAGTTGTTATCTGTCTCATAATCAGCCTAAAGATGGTACTACTTTGTTTTAATGAATAAACAACTGAAAAATATTGATCAACAAAGCTCTTTGCTTTGCTATTTGAGTTATGAAAAAGATTCCATATCTCTGCAAAAGGTAATATTCTTCCTTTAGAGGTTGTTTGTTTGCTGGAGAAGCACAATAATCTTCTTCGACATGTGAAACTTGTTAACAATGTTAACAATTTTAATCAGGATGGGATTGGAAAGTCTATGTTTGTATACTCGTATGTCTGACTTCGAGGTTGATAGTACAATTTCTTCCTCGTGTTTATGTGAGGGCAAAACAATTGTCTTCTGAGAGGGGAG

mRNA sequence

CTTAATTCCATCAGTCGTGTAATAGTGTACGTTGGATCAATGAATCCAAGAACGCATCGTGACCGTCGATTTAGAACCTCAAAAATTCCACCCACTTTCCCTTGAAGACTCAGCGTCACATATAGTGCAAAACCAGGCGAAGAGCAATTGCGAGATTTTCCGAACCCTTTTTTTTCATTCTTCGCTTGGACATCGCGAAGATCAAACCCCAGAAATTTTTCCTTCTTCCAACTTCAAATAATGTCGGGCGTTACCAATCAAGAAGAGGACAAGAAGCCCACCGATCAGTCGGCTCATATCAACCTCAAAGTCAAGGGCCAGGATGGAAATGAAGTTTTCTTCCGGATCAAAAGGAGTACCCAACTGAAGAAGCTAATGAATGCTTACTGTGACAGGCAGTCGGTTGATTTGAACTCCATTGCATTCTTGTTTGACGGCCGCCGACTGCGTGCAGAGCAGACTCCAGAAGAGCTGGAAATGGAGGATGGAGATGAGATTGATGCAATGCTTCATCAAACTGGAGGTGGAGGTGCTCTTATCTAAGTTAATTTCAAAAACAAAATAGTTCCTAAAACATCATTTGGGAATCTATAATTTTCTTACTACTGCTACTGCTAGTATATGCCTGAACTTCTGCTGCTGGATGTTGCTTTTGTCTATAAATTACGATAACGATTTCTGCCTCTTCCAGTTCTCTAGAAGAGAAAGAGAGACTATGTTGGACTCCTTTATATATGTAAATGCTGTTGATGTGGATTCCTCCTGTTTCATTTTTCTGAGTACATCCTGAAGTTACAATGTGATTATGTTTGGCTTGTGAGTCTTTGTTCCCGAGACATGAAACTTTCAAAAGGTAAAATAACAGTACTTGTGAAGGAACTTCAAAGATAAGATCTACAGGGTTTCACCAAGAAGGATTGATTCTGCTAAGTGCCAACTGTACTCGAAGCTTGGGAAGCTAATAAGTATATTGTTTCTCTATTCACAGATAGCCACTGCCCTGATGTTCTAAAAAGTCCCAAAATCATGAAGGAAACGAAGAAGCTTTTGGTATAGGTTAGTTGTTATCTGTCTCATAATCAGCCTAAAGATGGTACTACTTTGTTTTAATGAATAAACAACTGAAAAATATTGATCAACAAAGCTCTTTGCTTTGCTATTTGAGTTATGAAAAAGATTCCATATCTCTGCAAAAGGTAATATTCTTCCTTTAGAGGTTGTTTGTTTGCTGGAGAAGCACAATAATCTTCTTCGACATGTGAAACTTGTTAACAATGTTAACAATTTTAATCAGGATGGGATTGGAAAGTCTATGTTTGTATACTCGTATGTCTGACTTCGAGGTTGATAGTACAATTTCTTCCTCGTGTTTATGTGAGGGCAAAACAATTGTCTTCTGAGAGGGGAG

Coding sequence (CDS)

ATGTCGGGCGTTACCAATCAAGAAGAGGACAAGAAGCCCACCGATCAGTCGGCTCATATCAACCTCAAAGTCAAGGGCCAGGATGGAAATGAAGTTTTCTTCCGGATCAAAAGGAGTACCCAACTGAAGAAGCTAATGAATGCTTACTGTGACAGGCAGTCGGTTGATTTGAACTCCATTGCATTCTTGTTTGACGGCCGCCGACTGCGTGCAGAGCAGACTCCAGAAGAGCTGGAAATGGAGGATGGAGATGAGATTGATGCAATGCTTCATCAAACTGGAGGTGGAGGTGCTCTTATCTAA

Protein sequence

MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI
Homology
[Close]
BLAST of Lsi05G005730 vs. ExPASy Swiss-Prot
Match: P55852 (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 6.1e-43
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 6  NQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFD 65
          NQEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFLFD
Sbjct: 4  NQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFD 63

Query: 66 GRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG 98
          GRRLRAEQTP+EL+MEDGDEIDAMLHQTGG G
Sbjct: 64 GRRLRAEQTPDELDMEDGDEIDAMLHQTGGSG 95

[Close]
BLAST of Lsi05G005730 vs. ExPASy Swiss-Prot
Match: Q9FLP6 (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 8  EEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGR 67
          EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGR
Sbjct: 6  EEDKKP-DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGR 65

Query: 68 RLRAEQTPEELEMEDGDEIDAMLHQTGGG 97
          RLRAEQTP+ELEMEDGDEIDAMLHQTGGG
Sbjct: 66 RLRAEQTPDELEMEDGDEIDAMLHQTGGG 93

[Close]
BLAST of Lsi05G005730 vs. ExPASy Swiss-Prot
Match: P55857 (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-38
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 0 

Query: 8  EEDKKPT---DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLF 67
          EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+N+IAFLF
Sbjct: 6  EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLF 65

Query: 68 DGRRLRAEQTPEELEMEDGDEIDAMLHQTGG 96
          DGRRLR EQTP+ELEMEDGDEIDAMLHQTGG
Sbjct: 66 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96

[Close]
BLAST of Lsi05G005730 vs. ExPASy Swiss-Prot
Match: O13351 (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pmt3 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-23
Identity = 53/94 (56.38%), Postives = 70/94 (74.47%), Query Frame = 0 

Query: 2   SGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIA 61
           +G T+Q++ K  T+   HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ 
Sbjct: 21  TGDTSQQDVKPSTE---HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLR 80

Query: 62  FLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG 96
           FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct: 81  FLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111

[Close]
BLAST of Lsi05G005730 vs. ExPASy Swiss-Prot
Match: Q9FLP5 (Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-20
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 9  EDKKPTD--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 68
          +D KP D  Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 69 RRLRAEQTPEELEMEDGDEIDAMLHQTGG 96
           R+   +TP+EL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]
BLAST of Lsi05G005730 vs. ExPASy TrEMBL
Match: A0A0A0L2Y3 (Small ubiquitin-related modifier OS=Cucumis sativus OX=3659 GN=Csa_3G073930 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.9e-48
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
           MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI
Sbjct: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60

Query: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI 101
           AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA+I
Sbjct: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGAII 100

[Close]
BLAST of Lsi05G005730 vs. ExPASy TrEMBL
Match: A0A1S3BKS1 (Small ubiquitin-related modifier OS=Cucumis melo OX=3656 GN=LOC103491091 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.9e-48
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
           MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI
Sbjct: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60

Query: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI 101
           AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA+I
Sbjct: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGAII 100

[Close]
BLAST of Lsi05G005730 vs. ExPASy TrEMBL
Match: A0A6J1DX09 (Small ubiquitin-related modifier OS=Momordica charantia OX=3673 GN=LOC111025229 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.5e-47
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
           MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIK+STQLKKLMNAYCDRQSV+LNSI
Sbjct: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKKSTQLKKLMNAYCDRQSVELNSI 60

Query: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI 101
           AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG +I
Sbjct: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGTII 100

[Close]
BLAST of Lsi05G005730 vs. ExPASy TrEMBL
Match: A0A6A1VQH5 (Small ubiquitin-related modifier OS=Morella rubra OX=262757 GN=CJ030_MR4G001405 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
          MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LNSI
Sbjct: 1  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSI 60

Query: 61 AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA 99
          AFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG  A
Sbjct: 61 AFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAVA 98

[Close]
BLAST of Lsi05G005730 vs. ExPASy TrEMBL
Match: A0A2I4DY72 (Small ubiquitin-related modifier OS=Juglans regia OX=51240 GN=LOC108984556 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
          MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LNSI
Sbjct: 1  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSI 60

Query: 61 AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA 99
          AFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG  A
Sbjct: 61 AFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAVA 98

[Close]
BLAST of Lsi05G005730 vs. NCBI nr
Match: XP_004149348.1 (small ubiquitin-related modifier 1 [Cucumis sativus] >XP_008449142.2 PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo] >KGN56103.1 hypothetical protein Csa_011007 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 6.1e-48
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
           MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI
Sbjct: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60

Query: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI 101
           AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA+I
Sbjct: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGAII 100

[Close]
BLAST of Lsi05G005730 vs. NCBI nr
Match: XP_038905908.1 (small ubiquitin-related modifier 1 [Benincasa hispida])

HSP 1 Score: 200.3 bits (508), Expect = 7.9e-48
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
           MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI
Sbjct: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60

Query: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI 101
           AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA+I
Sbjct: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGAVI 100

[Close]
BLAST of Lsi05G005730 vs. NCBI nr
Match: XP_022158763.1 (small ubiquitin-related modifier 1-like [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
           MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIK+STQLKKLMNAYCDRQSV+LNSI
Sbjct: 1   MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKKSTQLKKLMNAYCDRQSVELNSI 60

Query: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI 101
           AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG +I
Sbjct: 61  AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGTII 100

[Close]
BLAST of Lsi05G005730 vs. NCBI nr
Match: XP_018812104.1 (small ubiquitin-related modifier 1 [Juglans regia] >XP_040988284.1 small ubiquitin-related modifier 1 [Juglans microcarpa x Juglans regia] >XP_042950623.1 small ubiquitin-related modifier 1 [Carya illinoinensis] >KAB1215151.1 Small ubiquitin-related modifier 1 [Morella rubra] >KAG2682371.1 hypothetical protein I3760_11G188300 [Carya illinoinensis] >KAG6637670.1 hypothetical protein CIPAW_11G193900 [Carya illinoinensis] >KAG6689772.1 hypothetical protein I3842_11G191100 [Carya illinoinensis] >KAG7957712.1 hypothetical protein I3843_11G189000 [Carya illinoinensis])

HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
          MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LNSI
Sbjct: 1  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSI 60

Query: 61 AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA 99
          AFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG  A
Sbjct: 61 AFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAVA 98

[Close]
BLAST of Lsi05G005730 vs. NCBI nr
Match: XP_023895256.1 (small ubiquitin-related modifier 1 [Quercus suber] >XP_030928996.1 small ubiquitin-related modifier 1 [Quercus lobata] >XP_030930287.1 small ubiquitin-related modifier 1 [Quercus lobata])

HSP 1 Score: 188.7 bits (478), Expect = 2.4e-44
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0 

Query: 1  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSI 60
          MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD++SI
Sbjct: 1  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDISSI 60

Query: 61 AFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA 99
          AFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG  A
Sbjct: 61 AFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGATA 98

[Close]
BLAST of Lsi05G005730 vs. TAIR 10
Match: AT4G26840.1 (small ubiquitin-like modifier 1 )

HSP 1 Score: 174.5 bits (441), Expect = 4.3e-44
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 6  NQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFD 65
          NQEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFLFD
Sbjct: 4  NQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFD 63

Query: 66 GRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG 98
          GRRLRAEQTP+EL+MEDGDEIDAMLHQTGG G
Sbjct: 64 GRRLRAEQTPDELDMEDGDEIDAMLHQTGGSG 95

[Close]
BLAST of Lsi05G005730 vs. TAIR 10
Match: AT5G55160.1 (small ubiquitin-like modifier 2 )

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-42
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 8  EEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGR 67
          EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGR
Sbjct: 6  EEDKKP-DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGR 65

Query: 68 RLRAEQTPEELEMEDGDEIDAMLHQTGGG 97
          RLRAEQTP+ELEMEDGDEIDAMLHQTGGG
Sbjct: 66 RLRAEQTPDELEMEDGDEIDAMLHQTGGG 93

[Close]
BLAST of Lsi05G005730 vs. TAIR 10
Match: AT5G55160.2 (small ubiquitin-like modifier 2 )

HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40
Identity = 85/102 (83.33%), Postives = 86/102 (84.31%), Query Frame = 0 

Query: 8   EEDKKPTDQSAHINLKVKGQ-------------DGNEVFFRIKRSTQLKKLMNAYCDRQS 67
           EEDKKP DQ AHINLKVKGQ             DGNEVFFRIKRSTQLKKLMNAYCDRQS
Sbjct: 6   EEDKKP-DQGAHINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLKKLMNAYCDRQS 65

Query: 68  VDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGG 97
           VD NSIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGGG
Sbjct: 66  VDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 106

[Close]
BLAST of Lsi05G005730 vs. TAIR 10
Match: AT5G55170.1 (small ubiquitin-like modifier 3 )

HSP 1 Score: 97.8 bits (242), Expect = 5.2e-21
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 9  EDKKPTD--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 68
          +D KP D  Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 69 RRLRAEQTPEELEMEDGDEIDAMLHQTGG 96
           R+   +TP+EL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]
BLAST of Lsi05G005730 vs. TAIR 10
Match: AT5G55856.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-20
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 10 DKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRL 69
          DKKP   S+HI +KVK QD   V+FRIKR  +L+K+M+AY D+  V+++++ FLFDG R+
Sbjct: 5  DKKPLIPSSHITVKVKNQDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRI 64

Query: 70 RAEQTPEELEMEDGDEIDAMLHQTGG 96
          +  QTP EL +ED DEI+A   Q GG
Sbjct: 65 KLNQTPNELGLEDEDEIEAFGEQLGG 90

The following BLAST results are available for this feature:
BLAST of Lsi05G005730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P558526.1e-4392.39Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1... [more]
Q9FLP61.5e-4195.51Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1... [more]
P558571.6e-3887.91Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=S... [more]
O133512.4e-2356.38Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
Q9FLP57.3e-2053.93Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1... [more]
BLAST of Lsi05G005730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2Y32.9e-4899.00Small ubiquitin-related modifier OS=Cucumis sativus OX=3659 GN=Csa_3G073930 PE=3... [more]
A0A1S3BKS12.9e-4899.00Small ubiquitin-related modifier OS=Cucumis melo OX=3656 GN=LOC103491091 PE=3 SV... [more]
A0A6J1DX095.5e-4796.00Small ubiquitin-related modifier OS=Momordica charantia OX=3673 GN=LOC111025229 ... [more]
A0A6A1VQH56.8e-4595.92Small ubiquitin-related modifier OS=Morella rubra OX=262757 GN=CJ030_MR4G001405 ... [more]
A0A2I4DY726.8e-4595.92Small ubiquitin-related modifier OS=Juglans regia OX=51240 GN=LOC108984556 PE=3 ... [more]
BLAST of Lsi05G005730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149348.16.1e-4899.00small ubiquitin-related modifier 1 [Cucumis sativus] >XP_008449142.2 PREDICTED: ... [more]
XP_038905908.17.9e-4899.00small ubiquitin-related modifier 1 [Benincasa hispida][more]
XP_022158763.11.1e-4696.00small ubiquitin-related modifier 1-like [Momordica charantia][more]
XP_018812104.11.4e-4495.92small ubiquitin-related modifier 1 [Juglans regia] >XP_040988284.1 small ubiquit... [more]
XP_023895256.12.4e-4494.90small ubiquitin-related modifier 1 [Quercus suber] >XP_030928996.1 small ubiquit... [more]
BLAST of Lsi05G005730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G26840.14.3e-4492.39small ubiquitin-like modifier 1 [more]
AT5G55160.11.1e-4295.51small ubiquitin-like modifier 2 [more]
AT5G55160.26.5e-4083.33small ubiquitin-like modifier 2 [more]
AT5G55170.15.2e-2153.93small ubiquitin-like modifier 3 [more]
AT5G55856.13.3e-2052.33Ubiquitin-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 20..91
e-value: 1.4E-14
score: 64.4
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 18..95
score: 15.993241
NoneNo IPR availableGENE3D3.10.20.90coord: 2..95
e-value: 1.4E-40
score: 140.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR10562:SF87SMALL UBIQUITIN-RELATED MODIFIERcoord: 1..96
NoneNo IPR availablePANTHERPTHR10562SMALL UBIQUITIN-RELATED MODIFIERcoord: 1..96
NoneNo IPR availableCDDcd16116Ubl_Smt3_likecoord: 18..91
e-value: 9.67864E-49
score: 147.375
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 20..90
e-value: 2.1E-25
score: 88.3
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 8..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G005730.1Lsi05G005730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030245 cellulose catabolic process
biological_process GO:0016925 protein sumoylation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0008810 cellulase activity
molecular_function GO:0031386 protein tag
molecular_function GO:0044389 ubiquitin-like protein ligase binding
molecular_function GO:0005515 protein binding