Lsi05G005650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein
Location	chr05: 7015717 .. 7021214 (-)
RNA-Seq Expression	Lsi05G005650
Synteny	Lsi05G005650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAAACCGGCGGAAGGAGAATAACGCCAAACAGACCATTTTTTTCTAAAACCCTATTTCACGTTCAGCCACACCCCCTACCCTTAACAGTCACTGCACCCCGCCCCGCCGGAGACGCCGCTCCTGCCCGACGCAGTCTCTGCGGCAGCCGCCGTATGCTACACTCTTATCTGCCGCATTCTCAGCCTTCGGACGAACTCGCCGCCTCTCCCTCCCTCTCACACTCTCTCGCCTCTCCGAGCAACTCAGAAATAGAGACAGTGGTTCAGCCCCCGCCATTGGTGAGATCGTACCTCCCCTCACGCCTACTGCCGCTCATTTTTCAGAGCTCAAGGTTTTTATTTGTTGCTTTTTTTATATATTTTTTAAATGTTTGTTTGTTGAATTATGTTGAGTTATCCTGAGAAGAAAAAAAAAGGGTTGGAATCGAAAATCTAAATTGAAGAGATTGAAATTATTGTTATCTGTTTCAAAGTAAATAGCAAAATACAATTAACAAAGGAAATATGAAACTTTGGAGTTTGCTTGAATGGGCTTGAGTTCGCTTGAACATAGAAAATACTATCTATGCATATTGCATATGAACTGGCATAGGGACAGCTTAAACTCCTGTAGGGTAAAATTAGAAACGTATTTTTCTTTAGTTTCAAATCTTGGCAAATCCGACACGAAACTTTTTAAAATAAAATAAAAGAAGAAGAAGAAGATTTTAAATCACAACTGATTTCAAATTCGTTGTTTATTTATTTATTTTTCCATCCAAACACTTGGAATGATTTCAAATCCTTTCAAATCCAGGAGTTCCAAACAAAGGTAAGTAAAGGAAACGGCCCAGGCTGCCATTTCTTTCAGCAGTTCAGAATTGGAATTTTAGTGCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGTATGTTTTTGATGAAACCCCATGTAAAGAAGGAGGCCTTGTTGGATTTGGTTACTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGTGATCTTTGAAATCTGTTATTTTTCTGTTGAAGCTTTTATCATCTTCCGTTTGTTGTTTTGTAGCTTGGTTATATCTGCAAATCTCATTCATATTGCGTCAAGCATAAATGCCTTTAAGTTACACATACGTTTATACTTGTATTGTTTCAAAGGTGATAAAAGTGGCTTTAGTTGATTTAATGGATTTTATTAAGATGTAAGGAATAACAGTTTTTTTTGGTTTTGGTTCCGTCATAAAGCTTTATACATATTAACTACAAATAATTAAATTGTGGATGCATTTTTCCATACTACTTATACTTGTCCATTGTTAATAATTTAGCTTTTGATATTGAATTATTATTATTATTATTTTTTTTTTTTGTGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGGGGGGGGGGGGGGGTTGGTGGTGCAAAAACAATCTTTCATTGAAAATAAATGAAAGAATAAAAGGGCAATTCAAAGGGAACACCTGAGGGGAGCCAAATTAATCCAAAAAAGGCTAAGGCCTAAAGGAAAATTACAAAAGCCTTTACGAACAGAAACCCAAAGAGACCTTTACAAACAGAAACCCAAAGAGAAGTATGAAATTTATTAGCGAACCACACAAAATTTTCAACTGCTCTAAAAATTCTATTGTTTCTTTCTCTCCAAAGTCCCAAAAATAGCACAAAAACAAGCACACCAAAGCTTGCTAATCTTATATCGCAAAGGGGAGTGGGACATACACAACTCAAGCAAATCTTTACTTCTCTTTGGCTATGCCAAACTAAGAGAGAGCCTAAAAAGCCCACTTCATAACGATCTAGCGAACTGACGATACCAAAGAAGATGATTCAGATCTTCACCTGCTTCCTTGCAAAAGATACATCATTGTGGCTCAATCAACTCGGGTGAGAATCTCTGAACATGATCCAAAGCATTCACCCTGTCGAGAAGGACCTGCCACACAAAAAATTTGATGTTCTTTGGTAATTTAATCTTCCAAAGTTACGAAAAGATGGGAGAACTTCGAGAAGAAGAGGGGCTCACTGGACATTGAAAAACGACTGACAAGAGAGTAAAATCTCCAATTAAAGCAAGGAGGGCGATTGTTAGTTTTGACTTTTTAGAAATGGTTCTTTCATTTCTTTATTGAGACATTGAATGGACTACGCTTATCTTGAAATAAAACAAGGTGTTCTGAATGCAATGAATGAATTTCTATATCAGCATTATATTTCTTTTTGTTTTTGTTTTATTTTAGCCCTAGTAGATTTGCCCTCAACATCCTAGAAGAACTGTTATGTGATTTTGTCATTTTCTTTCTTACAAAGAAGTAGATTCGTTTCTACAGTTTCAGGCATCTGTATGTTTACTCTATCTGATGCTTTTCATTGAAGAAGCAGTGACCCTAATAGGTCCTCTTGAACAATTGAAAATCTTCCACACATTTCTTCATTTAGTTAGTGGATGATAAGGCTGTCCATAATTACAGAGAAGGTTTATAGCTTGTTGGTTCATTTAGTTTGCTCGAATATAGCCATTCCAACATGTCCCTGGTTCGAATCTCGTAATCGGTATGGCGTTCAGGCTTTAATGTATGATGGAGTCTGGAATTGGATTTGATTCCAAAGAACTGTCCATAATTGAAGGGAACAACCATAAGAGCCTAATTTTATTAGGGTACTTCTACGTACTAAAATTTTCATATTGCCTTTGGTAAACTCCTATTACTATCTGGAGACTTAGGATTTAGGTGCTTTTAAAAAGCCATAAAGAACAACCAGAGGTTCACATAAGCCATGGCCGGGAATTTTGACCAGCAATCAAGTTTGCTCTGCCCATCATCAAAAGTTGCTCATTCATTTCCTTGTCCTTAAATTCCTGCAAGCTGTTCAATCAGTATTTTTACTACATGGCTGAACCAGACAAGACCTGTAACTACCCATTTTGTAATCTGTATAATCTGGGGGGAAATTTTGGGTCTGGTCACCAACTCAGATGTCATCCCAAGACAAAGTATTACCATTTCTACCAACCGATATCTTGGAGAAGTTTCAAAATTTTCTCACAACTGAAATTAAAGATCTAAGGATGTCTGCCATCATTCGTAACTGTTTTCTTAATTTAACCAACCAGTTGAACATGTCCAATCTTGTCACTGATTTTATGCCTTGGAGACTCTCTCACATTGAAAATGTCTACACACTTAGAACTTAGAAGGAAGAGCCACATGTTTAGAGTTTCCTGCTCAACATCTCTTGGCTCAGAACCACAGACTTCCAATTTATGAAGTGAGTTCTTCCTTCATGATTTTTGCCACCTCGAATGAAGCTTCTGATCTTTAAACTCCCATCACCTAGCCACCTTATTAGGAACCTCATAGAAAAGAAGGTTGGAGTGCATCAGAAGATTGCTTGGACAAGCTTAATCGATCTCCCTTAAGCAGTTGTAGTTAACCCTTACAAAGAAGGGAGGCACAATCATATGGTCCTTGTATATTCATACTAACTAGCCAAATATGACTTGGGCTATTAGACCTTTCATTTATGCCCAGTTGGAACTATCAAAAGTCGAACTCTGCTGTGGATCGTATACACAATATCTTAGGAGTTTGTAAGACCCCCGATAATTCACAAATATGCAAGGAAGGGTAAAAGAGGAATTGAAGGGGGAACAAACGGTTAGTGGGAAGAGAATTGAGGCTGCGGATGAAAGGGGACCACAGTGCTGCAGTGGTCCCGAGTGTGTGGAGGGTTTATGAAGGGCTTGGCGTGGATGGAAGGGGTGTGAAGAGTTTTGTGGCGAAGAGTAGTCTTCTTGGAGAGGATTCCTAGCTCTCTCGAATGTGCTAGGGTTTTTTTCATTTTTGTCCTTGTTGATGTTCTTATTAATTTCCTTGGAATACTCTTGAGACCTTGATCAGATTGGGGATGTATAATACAGGGGGGTGTTTGCCCTGTTATTTTCTGGTATTTCTAGTTCTTTGTTGGGTTTTCCTGTGAGCAGGAACCAGATACCTAAAAGAGTTCTCAACTACAACTTGTTACTCAGATGTATGGTGAAGTTTCCTGACTTTGTTGTGGTTCCTGCAAAAAAATTTGTTCTATTTTGTTTATAATATATATATCTCAATCAATTAATGATATTATTACTCTTTCTTTTTTGGTAAAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAATATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCACCGTGATGCAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATCTCCTCGACTTAGCATGGTGGTTGACGAAGATGAAGACGACGACGACGACGACGATGAAGAATACAACGTGGAAGAAGAAGAGAAGAAAGTAGAGTGAATTTTGCTCGTCTCTATTATTATGGTCCAACTTTGAACTTGTTGAAGGACCCCTGGTACCATTTCTGGATTCTAGACAGACAAATAAAGAGGTCCATAGTTTCTTTAGTTGTCCATATCATCTGTTTCTAAGTAACAAAGGTCCATAAATGTCTTCTTCTCAAATTTCCATTAGAATGGGATGTTTTGGGGTTGTTTTCCAGGTCTTGAACTTCAGCCCTAAGTGAAAAGTTCAAGAACTGAAAATCCTTGTCTGTCTTTTAAAGCTGGTGTACTGTAATCTTGCTTGAATTGACATTGTATGGAATGAAACTGGAGCAAATATTAGGTTTGTTGAAGATCTGGTTGAGAAATCTAGACACGTTTGTTTCAAGTG

mRNA sequence

GGGAAAACCGGCGGAAGGAGAATAACGCCAAACAGACCATTTTTTTCTAAAACCCTATTTCACGTTCAGCCACACCCCCTACCCTTAACAGTCACTGCACCCCGCCCCGCCGGAGACGCCGCTCCTGCCCGACGCAGTCTCTGCGGCAGCCGCCGTATGCTACACTCTTATCTGCCGCATTCTCAGCCTTCGGACGAACTCGCCGCCTCTCCCTCCCTCTCACACTCTCTCGCCTCTCCGAGCAACTCAGAAATAGAGACAGTGGTTCAGCCCCCGCCATTGGTGAGATCGTACCTCCCCTCACGCCTACTGCCGCTCATTTTTCAGAGCTCAAGGAGTTCCAAACAAAGGTAAGTAAAGGAAACGGCCCAGGCTGCCATTTCTTTCAGCAGTTCAGAATTGGAATTTTAGTGCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGTATGTTTTTGATGAAACCCCATGTAAAGAAGGAGGCCTTGTTGGATTTGGTTACTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAATATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCACCGTGATGCAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATCTCCTCGACTTAGCATGGTGGTTGACGAAGATGAAGACGACGACGACGACGACGATGAAGAATACAACGTGGAAGAAGAAGAGAAGAAAGTAGAGTGAATTTTGCTCGTCTCTATTATTATGGTCCAACTTTGAACTTGTTGAAGGACCCCTGGTACCATTTCTGGATTCTAGACAGACAAATAAAGAGGTCCATAGTTTCTTTAGTTGTCCATATCATCTGTTTCTAAGTAACAAAGGTCCATAAATGTCTTCTTCTCAAATTTCCATTAGAATGGGATGTTTTGGGGTTGTTTTCCAGGTCTTGAACTTCAGCCCTAAGTGAAAAGTTCAAGAACTGAAAATCCTTGTCTGTCTTTTAAAGCTGGTGTACTGTAATCTTGCTTGAATTGACATTGTATGGAATGAAACTGGAGCAAATATTAGGTTTGTTGAAGATCTGGTTGAGAAATCTAGACACGTTTGTTTCAAGTG

Coding sequence (CDS)

ATGCCTCTTTACGATTGTATGTTTTTGATGAAACCCCATGTAAAGAAGGAGGCCTTGTTGGATTTGGTTACTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAATATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCACCGTGATGCAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATCTCCTCGACTTAGCATGGTGGTTGACGAAGATGAAGACGACGACGACGACGACGATGAAGAATACAACGTGGAAGAAGAAGAGAAGAAAGTAGAGTGA

Protein sequence

MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPRLSMVVDEDEDDDDDDDEEYNVEEEEKKVE

Homology

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BLAST of Lsi05G005650 vs. ExPASy TrEMBL
Match: A0A6J1FEF6 (uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC111443208 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.4e-64
Identity = 129/153 (84.31%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+EL+K PR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 LSMV----VDEDEDDDDDDDEEYNVEEEEKKVE 150
             M+     DE++DDDDDDDEEY+VE+EE+  E
Sbjct: 121 FKMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

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BLAST of Lsi05G005650 vs. ExPASy TrEMBL
Match: A0A6J1CN79 (uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013137 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM LMKPHVKKEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+Y
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD KYGLEFLSEDD K ELSK PR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPR 120

Query: 121 LSMVVDED---EDDDDDDDEEYNVEEEEKKVE 150
           + ++ D+D   EDDDDD+DEEY+VE+EE K E
Sbjct: 121 IGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE 152

[Close]

BLAST of Lsi05G005650 vs. ExPASy TrEMBL
Match: A0A6J1KXT7 (uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.9e-62
Identity = 123/149 (82.55%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV D+KSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+EL+K PR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 LSMVVDEDEDDDDDDDEEYNVEEEEKKVE 150
            SM+ D+D D++DDDD++ +VE+E ++ E
Sbjct: 121 FSMIGDDDADEEDDDDDDDDVEQEGERRE 149

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BLAST of Lsi05G005650 vs. ExPASy TrEMBL
Match: A0A7N2L1D1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.9e-61
Identity = 122/149 (81.88%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM L+KPHVKKEAL++LV R+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGRYY
Sbjct: 1   MPLYDCMLLLKPHVKKEALMELVARIGKHVYRRNGVLADMKSFGMVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK ELSK  R
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFTR 120

Query: 121 LSMVVDE--DEDDDDDDDEEYNVEEEEKK 148
            S+  D+  DEDDDDDDD+EY+V++EEKK
Sbjct: 121 SSIYDDDDFDEDDDDDDDDEYDVDQEEKK 149

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BLAST of Lsi05G005650 vs. ExPASy TrEMBL
Match: A0A0A0L2X6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073850 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 125/153 (81.70%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYD MFLMKPHVKKEALLDLV RVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY
Sbjct: 1   MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD ++GLEFL EDD K+ L K  R
Sbjct: 61  QGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQFGLEFLGEDDDKNGLEKLSR 120

Query: 121 LSMV----VDEDEDDDDDDDEEYNVEEEEKKVE 150
           L+++     DEDED+DDDDDEEYNVE ++ K E
Sbjct: 121 LNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE 153

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BLAST of Lsi05G005650 vs. NCBI nr
Match: XP_038905169.1 (uncharacterized protein LOC120091279 [Benincasa hispida])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 131/154 (85.06%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM LMKPHVKKEALLDLV RVGKHVFRRNGVVCDIKSFGVVQLGYGIKKL+GRYY
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLEGRYY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRD KYGLEFLSE+DGKSEL K PR
Sbjct: 61  QGQLMQMTMMATPNVNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEEDGKSELGKFPR 120

Query: 121 LSMVVDEDE-----DDDDDDDEEYNVEEEEKKVE 150
           L M+ D+DE     DDDD+DDEEYNVE+E+++ E
Sbjct: 121 LDMLDDKDEDEDEGDDDDNDDEEYNVEQEKREAE 154

[Close]

BLAST of Lsi05G005650 vs. NCBI nr
Match: XP_023539684.1 (uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64
Identity = 130/153 (84.97%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGK+EL+K PR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKNELNKFPR 120

Query: 121 LSMV----VDEDEDDDDDDDEEYNVEEEEKKVE 150
            +M+     DE++DDDDDDDEEY+VE+EE+  E
Sbjct: 121 FNMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

[Close]

BLAST of Lsi05G005650 vs. NCBI nr
Match: XP_038903157.1 (uncharacterized protein LOC120089825 [Benincasa hispida])

HSP 1 Score: 254.2 bits (648), Expect = 6.9e-64
Identity = 130/151 (86.09%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLY+CM LMKPHVKKEALLDLV RVGKHVFRRNGVVCDI+SFGVVQLGYGIKKLDGRYY
Sbjct: 1   MPLYECMVLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIRSFGVVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATP+ NKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGKSEL + PR
Sbjct: 61  QGQLMQMTMMATPSTNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELREFPR 120

Query: 121 LSMVVDE--DEDDDDDDDEEYNVEEEEKKVE 150
           LSM+ D+  DEDD+DDDDEEYNVE+E+++ E
Sbjct: 121 LSMMDDKDGDEDDNDDDDEEYNVEQEKREAE 151

[Close]

BLAST of Lsi05G005650 vs. NCBI nr
Match: XP_022936695.1 (uncharacterized protein LOC111443208 [Cucurbita moschata])

HSP 1 Score: 253.8 bits (647), Expect = 9.0e-64
Identity = 129/153 (84.31%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+EL+K PR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 LSMV----VDEDEDDDDDDDEEYNVEEEEKKVE 150
             M+     DE++DDDDDDDEEY+VE+EE+  E
Sbjct: 121 FKMIGDDDADEEDDDDDDDDEEYDVEQEERTTE 153

[Close]

BLAST of Lsi05G005650 vs. NCBI nr
Match: KAG6596891.1 (hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030167.1 hypothetical protein SDJN02_08514 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-63
Identity = 129/153 (84.31%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGK EL+K PR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKKELNKFPR 120

Query: 121 LSMV----VDEDEDDDDDDDEEYNVEEEEKKVE 150
            +M+     DE++DDDD+DDEEY+VE+EE+  E
Sbjct: 121 FNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE 153

[Close]

BLAST of Lsi05G005650 vs. TAIR 10
Match: AT3G18760.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-42
Identity = 86/136 (63.24%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM L KP ++KE L+DLV R+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+Y
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
           QGQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K G     + + +  L+   R
Sbjct: 61  QGQLMQITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIG-----QSEKEDSLTVPNR 120

Query: 121 LSMVVDEDEDDDDDDD 137
           L+     D    D+DD
Sbjct: 121 LTSGSLYDGSSSDEDD 131

[Close]

BLAST of Lsi05G005650 vs. TAIR 10
Match: AT3G18760.2 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 154.1 bits (388), Expect = 9.0e-38
Identity = 81/136 (59.56%), Postives = 99/136 (72.79%), Query Frame = 0


Query: 1   MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCM L KP ++KE L+DLV R+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+Y
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKSELSKSPR 120
                Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K G     + + +  L+   R
Sbjct: 61  -----QITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIG-----QSEKEDSLTVPNR 120

Query: 121 LSMVVDEDEDDDDDDD 137
           L+     D    D+DD
Sbjct: 121 LTSGSLYDGSSSDEDD 126

The following BLAST results are available for this feature:

BLAST of Lsi05G005650 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G005650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEF6	4.4e-64	84.31	uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1CN79	1.1e-62	84.87	uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1KXT7	6.9e-62	82.55	uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530...	[more]
A0A7N2L1D1	5.9e-61	81.88	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A0A0L2X6	3.8e-60	81.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073850 PE=3 SV=1	[more]

BLAST of Lsi05G005650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905169.1	1.8e-64	85.06	uncharacterized protein LOC120091279 [Benincasa hispida]	[more]
XP_023539684.1	2.4e-64	84.97	uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]	[more]
XP_038903157.1	6.9e-64	86.09	uncharacterized protein LOC120089825 [Benincasa hispida]	[more]
XP_022936695.1	9.0e-64	84.31	uncharacterized protein LOC111443208 [Cucurbita moschata]	[more]
KAG6596891.1	1.2e-63	84.31	hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi05G005650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18760.1	2.1e-42	63.24	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]
AT3G18760.2	9.0e-38	59.56	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 1..118 e-value: 6.3E-17 score: 63.4
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 4..95 e-value: 5.4E-16 score: 58.7
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 1..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..149
None	No IPR available	PANTHER	PTHR21011:SF14	SUBFAMILY NOT NAMED	coord: 1..145
None	No IPR available	CDD	cd15465	bS6_mito	coord: 3..96 e-value: 1.70575E-24 score: 88.7437
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005650.1	Lsi05G005650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding