Lsi05G005570 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATTATTATTATTCATCAATTCCCTTCTTCATTCTAACCATCCTCTCAACCCTCTTAACCTCAACTGAGTCCCATAGATGTACAGAAAAATTCCAACAGCTCATCCAACAAAGAAACATCTCAAATTGCCAAAGGCTCCCAACTCTCGGCGCCGAGCTCGGTTGGAGCCACCCTTCATCCGACAAAGACCGCCACGTGGCTCATGTCCTCTTTGGGGCCCCGATGGAAGACCAAGGGGGGTGGATAGCGTGGGGTGTGAACCCCGGGCCACAGCCGGAGATGGTGGGGACGAGAGCCGCGATCGGGATCAGCAGCCCTAGTAATGGCTCTCATTATTGCAAGACTTACAATGTGAGCCATGAGACTAGGATTGGGTGCCCACTCCGGCCGTTGGATATGGAGGAGATCAAGTGCTTGAAATTTGAATATGATGGCTTGACACAATACCATTTAATATCAGCTATTTTGAATCTGTCTACTGTGGATTATAATGTTTCGAAGCTTAATATTGTGTGGCAGATTGGATCAAATGTTGATGAAGATAGGCCTTTAATGCATGTAGCTACCTTAAAGAATGTTGATTGTGTTGAGACAATTAACTTGCTTACGGGTAAAAGTACTGATATGACTCACCTCAAGATCTACCTTAGACAAGTATGCATTTTTCTTTACTCTTCTTTTTCTTTTTTTCATTTTTCTCGTATTTTGAATTTGGCCGATAACATGAAGTTTCATCTCAAAATTAGATAACAATATGGGAGGAGTATAAGTTATATATTTTATAAAGATTTTTTTGTTATTAACATGTCTTCTCAAGATAGTAATGTCTCTTTGGGTTCATTATTCTTAGATGAGAGAATTCAATTTTTGTCTTTAGATTGAATGTTCGTTTGGGTTTTATGGGATTTGATACTATATTAGATAATATGTGATTCCATCTCAAAATTTAATTGGTAATGAGAGGAGTAACTCAAGTATGTTATAAGCATTTTGTGAGATTCCTTGATTTTTTTTCGGTGGGCATCCACAACATGCAATCCCAAGATAGTGAGTTTTTGGGTTCACCATCCTTGGATTGTGAATTTGAGATGAAATTTCATGTTATCTAATAGGGAAATTTTAAAAAATAGAAAAATAAGGGAAACTATTTACACAAAATAGCAAAATTTTTAAATAGTTATGATAGACGCTGATAGCTCAGTGATAGAAATAATAGAAGTCCATCACTGATAGATGCTGATAGAAGTCTATTATGTCCCTCAATATTTTTTTTTTTTGCTATTTTTCTGTAAATAGTTTGAGATTTTTTTTATTTGTGAAAATTTTCATGGTAAAAACTCAAAGAGTCCCTCTAAAAGACTTTGAGGTCCCCTATTTTTCGAATGTGGGGTCCTCAACAGTTTTGTTACTAACTTTAATCTCTTTTTTTCCCATTTTTAGAATCACGTTTCTCATTTTTCATAGGCATTTTCAAAATTGTGTGGAAATTATATTTTAGAAACAAGAGAAAGTCAAGCACTCCATTAGATGACCATTTTGAATTGTTGTTTAAGTTTATAATTTTCAAAATATCCAAGCTCAATTTTCAAAACTAATAAAAGTAAGGAATATTTTATTAGGAAAAGATGAAAACTATGATAAAGAAGTTATAAGAAAATAAAAACAATTTTCAAAATTATAAAAAAAGTTTCGTTTGATAACCTTCGTTTTTTTATCCATATATTTTCAATTTTTCATTTATTTTGACCCTTGTAATTTTATAATATATTAAGAGCATGTTTGGGAGTGATTTTAAAATCACTCAAAAACACACTTCACTCAAAATTAATTTAATTGTCAATCTTACACTTTTAAATGCAATTTTCAATCATCAAAATTGGTTTTGAATGATTAGGAATATTTCACAATAATTTCGAAACTGACAAAAGTGATTTTAGTCATTTTAAAATCACTCTCCAAACATGCCCTAAGTTCCTTACAAATGAAAAAAATGAAGCGATCAAAATAGTCATTTTTCAAAAGTACAAACACCAAAATGAACCAAAGTAGACAATGAAAATGAATATAACCAAAACAAAGCAAAATGTTCAGAAATAAGCGAATGTACGTTACAAAATAGTATTTAAACGATTTTTTTTTTCATTTTTGTCAGGTGCATGGAATATTGAACATTATAGGGTGGGGAACGTTGTTGCCAATTGGAGCAATAATAGCAAGATTCTTTAGGAAATTCCCATTTGAAAGTGAGGTTTGGTGGTATTATACTCACGTGGGTTGCCAATTCACTGGATTTTCCATTGGCGTCGTTGGTTGGGGCATTGGACTCTGGCTCGCTCATATTTCCCCTCGCTACATTTTCATCACTCATCATGTCTTTGGCATCTTCATCTTCGCTTTTGCCACTTTACAAGTTACTCTCTAAACTCTGTTTCTCGATTTCACGACATGTTTATGAGCGATTTTGAAATGGTTAAAAATTACGTTTATTATATAGGATCATCAAAAATATCTTTTTAAATCGTGTGTTTAAAATTGTAAACTCAAAAGCTTAGATCCTATTTGATAATACCACTATTTGGTTTTTGATTTTTGAAAACCTGTTTTTAGGTTTGTAGTTTTTAAAAGACAAAAATCATACATGTTTGGTTACTATTTTTGATTTTATGGTTTTTTTTTTTTAAGTAAAATTGAAAAAAATATATGTTTGATAATTGTGTTTCTACTTTTTTGTTTTTTAAGAGTGATTTTGAAATGGTTAAAAATCACGTTCATTACATGAATCGAAACATCTTTTTAATCGTGTGTTTAAAATTGTAAACTCAAATGCCTAATTTTTTTTAATGATTTTGAACGTGTAAAAAGTGGAATTAATGTAGGTTTGGGAGTTATGGTTTGTTGAAGTAGTGATCTTAGGTATAATTGATTTTGTAAAGTTGGTTTTCATATGTTCATATTGATTTTTCTTCTAACTCTTAAAAGTGGTTTTTTTATATTTAAAAAGAATTTTGAATTATTATACTTAGTTTCAAAAGTGATTTAAGAATTACTAAAACTGTAACTATTTAATTTTTAGTTTTTAAAAATTAAGTTAATAAACACTATTTCCACCTATAAATTTCTTTGTTTTGTTATTTACTTCCCACCAGTGTTTTTAAAAACCAAGTCAAATTTTGAAAACTAAAATAAAATTAAAAAAATTGTTTCTATTTTTAGATTTTGACTAGAAATTCAAGTGTTTTTTAAGAAATGTTATAATTGTAGTATAGATTTAAAAAAACAGAAAACTAAAAACAAAATCGTTACCAAGTTAAATTAAGGATTTGTTATTTTTTAAAATGGTCAGTACATAAGCCAGGCAAATTTACTTTAAAAAAAAAAGTGGAAAATTTTTTGTGGGGATGATTCTTGGTCAATCATCCCACTAAAAGCATATTTCAAATAATTGTTGAAAAACCATTCTAAATTATTTCATATTCTTCTAAAATCAATTTCAACATTGGCATAACATCAAATTTAAAAGAAAAGTGATTTTGGACATGTGAAAATCACTTCCAAACATATTTTTATAATCATTTCAAAATCACTTTTAAACATGTCCTTTATACAATTAATATTAATATCACTTACGTTCACATCTAACATGATTATTTCTACATTGTAGACATTGGCAATAAGGTTTAGACCAGGGCCATTTGACGACTTCCGAAAAGTGTGGAACATCTATCATCATTTCCTAGGATATGCTTTACTAACATTGATATATATAAACATATTTGAAGGAATAAAAATATTGAAGCCAGAGAATAAGGAGAAATGGAGATTTGCAGTGATTGGAATTCTTATAGCTTTGGGATTAATCACTTTGGTTCTTGAGGGTTATACTTGGAGAAAGTTTATTAATGAAAGAACTGAACAGAAGAAATTAGAGTCTTTACCTAATCAAGCTAAGGCTGACCAGGAAGAAGAAGAAGGTGGAATTACAACTCAATCACCATTCTCAAGAAGAAACTCTCCCACTACACCTAGATTAGTGGAAGAATAA ATGCATTATTATTATTCATCAATTCCCTTCTTCATTCTAACCATCCTCTCAACCCTCTTAACCTCAACTGAGTCCCATAGATGTACAGAAAAATTCCAACAGCTCATCCAACAAAGAAACATCTCAAATTGCCAAAGGCTCCCAACTCTCGGCGCCGAGCTCGGTTGGAGCCACCCTTCATCCGACAAAGACCGCCACGTGGCTCATGTCCTCTTTGGGGCCCCGATGGAAGACCAAGGGGGGTGGATAGCGTGGGGTGTGAACCCCGGGCCACAGCCGGAGATGGTGGGGACGAGAGCCGCGATCGGGATCAGCAGCCCTAGTAATGGCTCTCATTATTGCAAGACTTACAATGTGAGCCATGAGACTAGGATTGGGTGCCCACTCCGGCCGTTGGATATGGAGGAGATCAAGTGCTTGAAATTTGAATATGATGGCTTGACACAATACCATTTAATATCAGCTATTTTGAATCTGTCTACTGTGGATTATAATGTTTCGAAGCTTAATATTGTGTGGCAGATTGGATCAAATGTTGATGAAGATAGGCCTTTAATGCATGTAGCTACCTTAAAGAATGTTGATTGTGTTGAGACAATTAACTTGCTTACGGGTAAAAGTACTGATATGACTCACCTCAAGATCTACCTTAGACAAACATTGGCAATAAGGTTTAGACCAGGGCCATTTGACGACTTCCGAAAAGTGTGGAACATCTATCATCATTTCCTAGGATATGCTTTACTAACATTGATATATATAAACATATTTGAAGGAATAAAAATATTGAAGCCAGAGAATAAGGAGAAATGGAGATTTGCAGTGATTGGAATTCTTATAGCTTTGGGATTAATCACTTTGGTTCTTGAGGGTTATACTTGGAGAAAGTTTATTAATGAAAGAACTGAACAGAAGAAATTAGAGTCTTTACCTAATCAAGCTAAGGCTGACCAGGAAGAAGAAGAAGGTGGAATTACAACTCAATCACCATTCTCAAGAAGAAACTCTCCCACTACACCTAGATTAGTGGAAGAATAA ATGCATTATTATTATTCATCAATTCCCTTCTTCATTCTAACCATCCTCTCAACCCTCTTAACCTCAACTGAGTCCCATAGATGTACAGAAAAATTCCAACAGCTCATCCAACAAAGAAACATCTCAAATTGCCAAAGGCTCCCAACTCTCGGCGCCGAGCTCGGTTGGAGCCACCCTTCATCCGACAAAGACCGCCACGTGGCTCATGTCCTCTTTGGGGCCCCGATGGAAGACCAAGGGGGGTGGATAGCGTGGGGTGTGAACCCCGGGCCACAGCCGGAGATGGTGGGGACGAGAGCCGCGATCGGGATCAGCAGCCCTAGTAATGGCTCTCATTATTGCAAGACTTACAATGTGAGCCATGAGACTAGGATTGGGTGCCCACTCCGGCCGTTGGATATGGAGGAGATCAAGTGCTTGAAATTTGAATATGATGGCTTGACACAATACCATTTAATATCAGCTATTTTGAATCTGTCTACTGTGGATTATAATGTTTCGAAGCTTAATATTGTGTGGCAGATTGGATCAAATGTTGATGAAGATAGGCCTTTAATGCATGTAGCTACCTTAAAGAATGTTGATTGTGTTGAGACAATTAACTTGCTTACGGGTAAAAGTACTGATATGACTCACCTCAAGATCTACCTTAGACAAACATTGGCAATAAGGTTTAGACCAGGGCCATTTGACGACTTCCGAAAAGTGTGGAACATCTATCATCATTTCCTAGGATATGCTTTACTAACATTGATATATATAAACATATTTGAAGGAATAAAAATATTGAAGCCAGAGAATAAGGAGAAATGGAGATTTGCAGTGATTGGAATTCTTATAGCTTTGGGATTAATCACTTTGGTTCTTGAGGGTTATACTTGGAGAAAGTTTATTAATGAAAGAACTGAACAGAAGAAATTAGAGTCTTTACCTAATCAAGCTAAGGCTGACCAGGAAGAAGAAGAAGGTGGAATTACAACTCAATCACCATTCTCAAGAAGAAACTCTCCCACTACACCTAGATTAGTGGAAGAATAA MHYYYSSIPFFILTILSTLLTSTESHRCTEKFQQLIQQRNISNCQRLPTLGAELGWSHPSSDKDRHVAHVLFGAPMEDQGGWIAWGVNPGPQPEMVGTRAAIGISSPSNGSHYCKTYNVSHETRIGCPLRPLDMEEIKCLKFEYDGLTQYHLISAILNLSTVDYNVSKLNIVWQIGSNVDEDRPLMHVATLKNVDCVETINLLTGKSTDMTHLKIYLRQTLAIRFRPGPFDDFRKVWNIYHHFLGYALLTLIYINIFEGIKILKPENKEKWRFAVIGILIALGLITLVLEGYTWRKFINERTEQKKLESLPNQAKADQEEEEGGITTQSPFSRRNSPTTPRLVEE Homology
BLAST of Lsi05G005570 vs. ExPASy Swiss-Prot
Match: Q9FGK4 (Cytochrome b561 and DOMON domain-containing protein At5g47530 OS=Arabidopsis thaliana OX=3702 GN=At5g47530 PE=2 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 2.8e-18 Identity = 91/352 (25.85%), Postives = 142/352 (40.34%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy Swiss-Prot
Match: Q9LSE7 (Cytochrome b561 and DOMON domain-containing protein At3g25290 OS=Arabidopsis thaliana OX=3702 GN=At3g25290 PE=2 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 8.1e-18 Identity = 93/371 (25.07%), Postives = 138/371 (37.20%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy Swiss-Prot
Match: Q9SV71 (Cytochrome b561 and DOMON domain-containing protein At4g12980 OS=Arabidopsis thaliana OX=3702 GN=At4g12980 PE=2 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 2.3e-17 Identity = 95/386 (24.61%), Postives = 143/386 (37.05%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy Swiss-Prot
Match: Q9FKH6 (Cytochrome b561 and DOMON domain-containing protein At5g35735 OS=Arabidopsis thaliana OX=3702 GN=At5g35735 PE=2 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 3.2e-14 Identity = 44/112 (39.29%), Postives = 59/112 (52.68%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy Swiss-Prot
Match: Q8VYH6 (Cytochrome b561 and DOMON domain-containing protein At4g17280 OS=Arabidopsis thaliana OX=3702 GN=At4g17280 PE=2 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 4.6e-13 Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy TrEMBL
Match: A0A1S3BM87 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103491078 PE=4 SV=1) HSP 1 Score: 494.6 bits (1272), Expect = 3.4e-136 Identity = 262/433 (60.51%), Postives = 295/433 (68.13%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy TrEMBL
Match: A0A0A0L2B4 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073280 PE=4 SV=1) HSP 1 Score: 478.4 bits (1230), Expect = 2.5e-131 Identity = 250/428 (58.41%), Postives = 287/428 (67.06%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy TrEMBL
Match: A0A5A7UML3 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00290 PE=4 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 1.2e-120 Identity = 241/409 (58.92%), Postives = 280/409 (68.46%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy TrEMBL
Match: A0A6J1DBT9 (cytochrome b561 and DOMON domain-containing protein At2g04850-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019262 PE=4 SV=1) HSP 1 Score: 384.0 bits (985), Expect = 6.5e-103 Identity = 187/299 (62.54%), Postives = 234/299 (78.26%), Query Frame = 0
BLAST of Lsi05G005570 vs. ExPASy TrEMBL
Match: A0A6J1FML2 (cytochrome b561 and DOMON domain-containing protein At3g25290-like OS=Cucurbita moschata OX=3662 GN=LOC111446572 PE=4 SV=1) HSP 1 Score: 349.0 bits (894), Expect = 2.3e-92 Identity = 186/397 (46.85%), Postives = 238/397 (59.95%), Query Frame = 0
BLAST of Lsi05G005570 vs. NCBI nr
Match: XP_038905596.1 (cytochrome b561 and DOMON domain-containing protein At4g12980-like [Benincasa hispida]) HSP 1 Score: 504.2 bits (1297), Expect = 8.8e-139 Identity = 262/430 (60.93%), Postives = 301/430 (70.00%), Query Frame = 0
BLAST of Lsi05G005570 vs. NCBI nr
Match: XP_008449124.1 (PREDICTED: cytochrome b561 and DOMON domain-containing protein At4g12980-like isoform X1 [Cucumis melo]) HSP 1 Score: 494.6 bits (1272), Expect = 7.0e-136 Identity = 262/433 (60.51%), Postives = 295/433 (68.13%), Query Frame = 0
BLAST of Lsi05G005570 vs. NCBI nr
Match: XP_004149355.1 (cytochrome b561 and DOMON domain-containing protein At4g12980 [Cucumis sativus] >KGN56085.1 hypothetical protein Csa_010498 [Cucumis sativus]) HSP 1 Score: 478.4 bits (1230), Expect = 5.2e-131 Identity = 250/428 (58.41%), Postives = 287/428 (67.06%), Query Frame = 0
BLAST of Lsi05G005570 vs. NCBI nr
Match: KAA0055837.1 (cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >TYK24061.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 443.0 bits (1138), Expect = 2.4e-120 Identity = 241/409 (58.92%), Postives = 280/409 (68.46%), Query Frame = 0
BLAST of Lsi05G005570 vs. NCBI nr
Match: XP_022151298.1 (cytochrome b561 and DOMON domain-containing protein At2g04850-like isoform X2 [Momordica charantia]) HSP 1 Score: 384.0 bits (985), Expect = 1.3e-102 Identity = 187/299 (62.54%), Postives = 234/299 (78.26%), Query Frame = 0
BLAST of Lsi05G005570 vs. TAIR 10
Match: AT5G47530.1 (Auxin-responsive family protein ) HSP 1 Score: 94.4 bits (233), Expect = 2.0e-19 Identity = 91/352 (25.85%), Postives = 142/352 (40.34%), Query Frame = 0
BLAST of Lsi05G005570 vs. TAIR 10
Match: AT3G25290.1 (Auxin-responsive family protein ) HSP 1 Score: 92.8 bits (229), Expect = 5.7e-19 Identity = 93/371 (25.07%), Postives = 138/371 (37.20%), Query Frame = 0
BLAST of Lsi05G005570 vs. TAIR 10
Match: AT3G25290.2 (Auxin-responsive family protein ) HSP 1 Score: 92.8 bits (229), Expect = 5.7e-19 Identity = 93/371 (25.07%), Postives = 138/371 (37.20%), Query Frame = 0
BLAST of Lsi05G005570 vs. TAIR 10
Match: AT4G12980.1 (Auxin-responsive family protein ) HSP 1 Score: 91.3 bits (225), Expect = 1.7e-18 Identity = 95/386 (24.61%), Postives = 143/386 (37.05%), Query Frame = 0
BLAST of Lsi05G005570 vs. TAIR 10
Match: AT5G35735.1 (Auxin-responsive family protein ) HSP 1 Score: 80.9 bits (198), Expect = 2.2e-15 Identity = 44/112 (39.29%), Postives = 59/112 (52.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|