Lsi05G005410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	serine/arginine-rich splicing factor RS40-like
Location	chr05: 6716206 .. 6725642 (-)
RNA-Seq Expression	Lsi05G005410
Synteny	Lsi05G005410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGGTAAAAAAAAGGAAATTAAGAGAGAGAAAACCCTACAAGCGGTACGCACTTGTCAGTTGTCTCTCTCTCGCAATTCCCTTCCCTCTCCGACACCGGCTACTGCGACGGCGACGCGGCTCCTCTGGGGGCACGATCAGGCGACGGCGCAACCCAGCTCAGATCTACCATAGTACCCACCTCTGGCGTTTGATCACCTACGCAACAACCTATCCCGGCCACACGCGGATCTGCAAAGACCTATCCCTCGGGTCGCTGGATCTGCTACAGACACACCTCGACGGCCCGATCTGCGGCGGAAAGTCATTTTGGAGACGATCGAGACTCACGGTAACTAACGCAGTGCTTTAGTTTTCCTTCATTTTCGATTCAGCAAGATCCAAGTCGGCAGCAACATCTTCAAGATCTTGAACCATTAGGAATTGAATCGCATTAAGGACCATAGTAAGTGGTTCTCATTTTGGGATTGTTTGATTATATGACTCTTAAATTTATTTGTATACTTTTAACTGCGCATCTATGTCAAACTGTGATGTGAATTTTGTGCTTGGATATGTGTGGGAAAATACACATTTTTTCATTTCTATCACAGTTGGATATGCTAATGTCAAATTGTATATATTTCTGCTAGCTGTTAGGTGGTTAATAGTTGGAATTATGGAGTTCTATTGGATGATTATGGTCAGCCATTTAGAAGAATGATACTTCTGTAATGATGATCAATGAGATAGTTTTGTTTGTCTACCTAATGGTTCAACTTTTTTGCGATATTCCATTGCACTTGGTGTTTTGCTCTAGGTTTAGACTCCAGCAAGCACTTATATCCCTAAAAGTTATGGTTGTAAGTGGTTAGAACTTGGAACTTAGGACTTCAAAGGTTGGATATCGCTGGTCAAACGTAAAAAGTTTAATTTTTTATGGAATTAATTAAATAGCTAAATAAAAATATTACATGGCAAAACATTTTTAATTGGTTAATATAGAATTTTGGTCACTGAACTTATTTTAGTCTCAGTGCATTCAAATGTCCCAATTTAGTCCTAAGTCCTAACTCCTAGTACTTGAAATTAGTCCTCACTGTTAGTTTATTGTTAATGTGCTATTTTTATTTAAGTCTCAATTAACTTTCCTTCTATAAATTTTGAAAACACATTCATATTGTGTCTTTTCTTGAATGGAAAATATTATTATTATTTAACCAAGATGATAAAATTTAACTTCAAACTAACTATAACGACTAATTGTAAGATTTATAGAAAGTAAATGGTCTATATTTGGATAATTTTAAAAACTAAACAATAACAGATCACGTCATATTATAAATATCACACTATTATATATATTATTTTGTAAAAAGCAATTTTTTGTTAGGAAAAACAATTTGACACAGGCTTGCTAACTTATTTGCAGCTAAGTTCATAGTTGTTGTGGATTCTTAAATACGTTCTTCACTTTTACAACTGGTTTCGAATAACTCTCTTGTTGATGTGGTGGAATTAAGTTTCAGGAACTCTGATGTCTTTTTATGATTTTATTATTATTATTTTTTTTACAAAAGTAACAATAGCATATTTATACTATATTATTTTTTTTATATAAATATAAAAGTACTGATATATATAAAAATACAATATTTTTTATGTTATTTTGTAAAATTGGAGACAGGCTTATTTGCAAAAGGTAAGTGCATGGTTGTAATGAATTATTATTTTTTATTTGTTTTTCACCCAGGATTATATTCAAATAGTTGTCTTGTTGATGTCTGGTTCCTCTTGGCGTTTTTTTTTCTCTCCCTCCTAGGGAGGTTGTATCCTTGAACCTCTTTCCCCCCATATATCAATGAAAAGTTTGTTTCTTGTTAAAATAAAATGGTTGTCGGGTTGATGTTTCATGAACTCTGATGCTGTATTTATATGTTTTTTTGTTTTATCATGCAAGAGATATGTTAAATGTTGTATTGTTTTTCCATTTTTTCTTCAGGTAGTATAGTATGAAGCCTATCTTTTGTGGAAACTTCGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGTGAGCTTCTAGCCATAGAATGCCTGTTTTTGTTTTAATTCCTTCTCTTTTTTTCCTAAAATACTTATAAGATGTATACTAGAAACACAGAAGAGAGCGTTTGTGTTCTGTTCCTGAATTTGTTTTGAAATAGTGTATAATTTGTCATGTCCGTACATACCATACCAATTGCACAAAGAAAAAAAATTGTAATTTGCAAAGTTGCTGATAATCTTTAATATATGAAAAGTACTGAACTGAAAAAGCTACTCTCTATCCACTAAGAAAGTGTTGGATTCAACGTCGGCAAGACAACTCAGCTGTTGGAAATTCCTCCAAAGTAGTTCCCGTTGCATTTGGTGCCTTGCAATACGAATGGGCATCATCCAGCGTATGGAAATCAGAGAAGGCAACATTTGTTGAGTTTTTGGTGGAGGATGCTAAAAAAAATTTGAGAAAAGAAGAGCGTATATTTTAAATCCTAAAACTCCTTGGCCAGAATTTTCTTTGGTGCAGGATTTCCTTTGCATATCCATAATCTTCTTGGATAAGGATCGCTCTTCAGAATTGAGTTTTCCGCCTGTGACAAGCTTCCTCTTCTTGTTTCCAAGAAGATTCATACTGATCCTCAATGGCACTACCATCTTACATTTTCCTCAGACACTTTGCTTTCCATTCCTCATGACTTTTGCCTGCCTACAATTTCATACGTTGTTTCAAGGTTGAAACATTGTCAACCTTAGCTCTGAGGCTGCGGAATAATGGAGAAGGCACTTCCTATTTGTAGACCTACCATGAGACATCCTGTTTTGGATTATTGCTCCTTGACACCACTTAGTTCACAACACAAGGTCTGTTGCTAAATTCGCTGGTAACTTAGTCTATAGATTTCACGGTGGTTGCAAATATTTCTTTCTTATGGTAAGAATTTTTGTGGTTTGTCATGTTGCATTTTGAGGAGTTCTTCAGTGGGAAAATTCTCATCTCTTATCATTGTTGGTGTCTCACAGATGCCACAATTAGTTATTCAGTTTTCGTTGTTTGATTGGTTTCCAGGGTTTGCTTTTATCTACATGGAGGATGAGAGAGAGGCTGAGGATGCTATACGTGCACTCGATCGGAGGGAATTTGGCCGAAAGGGCCGCAGACTACGTGTTGAGTGGACCAAAGTAATGACATTGATTTGGCACAACTTCCAACTGACTCTTTCCTTTCCCCTTTGTGAAACTTTTATTTGATTATATTTACTATAGCTTCAACTGTAGTCTTTATTTTGATCTATCATTCTTTTTCTCTATAGCAAGAGCGTGGCATTAGAAGACCTGGTGGAGGTGGTGGTGGTGGTGGAGGCGGTACGAGGAGATCATCTACTAATACAAGACCTTCAAAGACTTTATTTGTTATTAATTTTGATCCATATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAACTGCAGGAGGATGCCACTAGAGCATTAGAGCTTACAAACATGAGGTGAATTTTTCTTCTTTGAATTGCATTTTAAGTGATTGAGTAAGGTCATTATATTGAAGGTTGATTGATCGATCCTCTTTTGTCCATCAGCACTGAGACCATCTGAAGGAAAATTACATCGATATTTTTACTTGTAGGCCAGCGCGTACATGTTCAGTTATTGTTATACCTTAATTATTATTATTGTGTACAGCAAATTGATGGACCGAGTGATTTCTGTGGAATATGCTGTTCGAGATGACGATGAGAAAAGAAATGGGTATAGTCCAGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGGCGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTATTAGCCGCAGTCCATATAGGAGACAAAGGGGTAGTCCTGATTACGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGAGAGAGGGAGAGGGGTTCACCTGATTATGGCCGTGGTCGTAGTCCCAAGCACAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGTGACCATGCTAGGGCCCCTAGCCACAGTCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAATCCCCAACCGAAGTCGCAGTCCTTACGGGAGAGAGAGGGAGAGGGGGAGTCCTACTGATGGACGTGACACTAGCTATAGTCCTCGTGATAGAGAGAGGTCCAACCCTGACAATGGTCATGATCAGCGGCAGAATGCAGTAGCCGAACCGGGTGAGAGCCCCAGTTATGGTGGCACTCAGAGCCCAAAGCATCGGGGATATAACAGGTTTGTAATTCGAGTTCGTTTTATTGTTATTACTATTACTTGATTCTTTTTAAAAAAAATTCGTCTTATTCCTGCGTTCTATGTGTTATGGTTTCGCAGCAGCCGTTCACCTCAAGCAGATGAATGATCATTTAGAAAGTGGGAAGTGATGTTGATCTCAATCTCTGCTTCAGACTTCAGAGTATGTTTAGTTGTATAATCAGTATCAGTACACATGTATTGTAAGGATAAAGTTTTGTGATTTCTTTACATTTGTGCTTCAGTTTCTTGCGATTATATGGATAATGCTGTTATTACCAGATTTTAGTTAACAATCATAATATATAGCACTCTGATCCATATCTGACTGTCTTCCTTTTTGCTTACCTACTTTTCAAATAGATAAACATGTTCATTCTGAAACTTGTTTTTATTTGTGGGTATAAATAGTTCGACTTGATTGAGTTGAGTTTGCTCTATTATGGCGAGTCATCTATAGCTAAGAGTGAGTGAATTTTGCTTTTAGCAGTTTAAAAGCACTTTTTAAAAATTATTTGGGCATGTTTGGAAGAGATTTAAAAATGATTAAAATCATCATGAAATATGTTTTTAATCCTTCAAAACTAATTTTGATGATTGAAAATTGCATTTAAAAGTGTAAAATTGAAAATTAAATAGATTTGAGTGATTAAAGTGTGTTTATTAGTGATTTTAAAAATGATAAAAGTGATTTTAACGATTTTAAAATTCATAAATAAATTACTTAATTAAATGTTTGTTTGGGGAGTGATTTTGAAATTGTTAAAATTATTTTTATCACTCTAGAATATACTTTCAATCATTCAAAATTAATTTAAGTTAAAAAATATGTTTGTTTAAGTTGATTATATAACTTGGTCCAAAATTAGCTATAACAAGGCGAATAAAGTGATAGTTACAAAACTATATAGATTTCAAAATGTATAAAATTATATTATGAATTATAATTAAAGAAAAAACTTAATGGCATTTGTGTTAATATAAGGATATTTTTTAAACAAAATGCGATTTCAATGTTACTTTTTGTAATTTGCCCTAAAAATTGTATTTGAAGGTTGATTAAGATTTATAAGTAATTTGATGGCATAGATGAGACATTTTTTTTTATTAAAAAAAATTATTTTTTTAGTTCAACAACATGCGTGGTGGAGGATTCGAACCTTGGCCTCTAGGTCAAAAGTATATATTTTATGCGAGAGTATATATTTTATGCGAGTTGAGTTAAAGATATTAATTTTATCCGTAGAGACTTGTCCTTAACGAGTGGAGATTTTCCATTTAGGCTTGTTTTCATTATTGTTATGTTTTTATTGTGATATATATTATATTTAAATTTCAAGTATTATTGTTTAATGATAACTAAGACAATGAATGTGTTTGAGTTGACAATTTAAATTTAAATTATATATATAGATAATTTGATATGTAATTATTTCGTTATATTAGAAAACTTAAGTAATCTTATCTCTTTAAATTCTAATTCTTTAAATGAAATTTTTTAGTGGAAAAAATATTTAATTAAATTTTTTTCACAAAATTTATTTAAGTTATTTGGTTTTTTTTTTCTTATATAAAAAGGATAAAATTCTTCGGTGAAACTCGATTCTTGCAAACATTTTTTTGGAATTTGTACCCGATTTCTATGAAATTAAATGAAGAATTTTGAAACCATGGGAAATAAAATGGAGCAGAGATGAGACTAGCCATCTCGGAAAGCTATCTCTAATCTCGACTTACCTCGTAAATATCTCTAATGTTAATGTTGTAGAATCTAAGACATCTATTTCTTTTGTTGTGATTCAATGTTTCAAATTCTCATTCACACAGTTGTAACAAGTGACTTTTTTTTTTTTAGGACAACAGGTGAATGATTTTATTGAACTAAAAAATCGAATAAACTCATTTTATTTTTCAAATTAGTTTTGCATTTTCTTTTATTAAGAAAGAGAAAAAAGTAAATAATATTTAGGAAAATTACTATAAAAAGAAAAAATATCAAACTATTTATAAATATAGAAAATTTTTACTGTCTATCAGTAATAGACCGCGATAGAACGATAGAATTCTATCGCGATATATGTGATAGACAGTAAAAATTTTCTATATTTGTAAATAGTTTAACTTATTTTTTATATATTTAAAAAGAGCCCTAGTATTTATTCTGTAATTGAAATTATTCCGTAAATGAAAATTAGGGTTAAAAAAAGAAAACCCTAAAAGCTCCCATTTTTCCCACAGCCGCAGTCCTCCCACGGTACCTGTCTCTCACTCTCAGCCTCTCCGGCGAATCCACACTGCGTTAATCGATCTCCTACGGCAGGCACACCATCTACGGCGGCCTGCAACTCACGGCCGAAAAAGAGTTTGCTACTCTTCGATTTCTTTTGAAACGGTAAGTGCATAGTTGTTGTGGATCTTTCAATATGTTCTTTACTATTAAGATTAGTTTCAAATAGTTTTTTTGTTGATGGATTGAAATTAGGTTTTGCGAACTCTTTGATGTTGCATTTGAATGTTTGTTTCAATGTTATCCTAGTATTGGGAGAGCGATGTGTTAAATGTTGTATTTTTCTTTTCCGATTTCTATTCAGGTATTATGAAGCCGATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAAAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGTGAGCTTCTATCCATAGCATATATCTTTTGTGTTTGGATTTCTTTTTATAATCCGGAGCTTATCAGACGCATATTAGAAACATAACAGAGGACCTTTGTGTTTTGATTCCTGAATTCATTTTAAAGTTACGTATAATTTGTATCATGCCGATACAAGCCACTTGCAAATTTTGAATCTATGCAATGCACTGAACTGACAAAGTTACTCACGACCCACTAAGAAAGTGTTGGACACAACGTTGGCAAGGCAATTCAGCTGTTGGAATTTCCCCCAGAGTAGAGGTCGTTCTCATTGCATTTGGTGCCTTGCAGTACGATTTAGCATCATCCAGCATATGGAAACCAGAGAAGCCGACTTTTGTTGGATTTTTGATGGGGGGTTCTAAAAAATTATTTGAGAAAAGAAGAGCGTATTTTTTAAATCCTAAACCGCCTTGGCCAGAATTTTCTTTGGTGCAGGATTTTCTTCGCATTTTCATAATCCTCTTGGATAAAGATGGCTCTTCAGAATTGAGTGTTCCGCCTGGGACAAGCTTCCTCTTCTTGTTTCCAAGAAGATTCATACCGATCCTCAATGGCACCACCATCTTACATTTTCCTCCGACACCTTGCTTTCCAGTTTCCATTCCTCATGACTTTTGCATGCCTACAATCCATACATTGTTTCAAGGTTGAAACACTGTCAACCTCAGCTGAGGCTGCAGAATATTGGAGAAGGAACTTTCTATTTGTAGACCTACCATGAGACATCCTGTTTCATATTGCTCCTTGACACCACTTAGTTCATACAAAAGGTCTGTTGCTTAATTCACTGGTAACTTAGTTTATAGATTTCACGAAGGTTGCGAATATTTCTTTCTTATGGTAAGAAATTTTGTTGTTTGTTGAATATTTCATTAGAGAGAAAAATTTATATTGCCTTTTGAGGAATTCCATAGTGGGAAAATTATCTGGTGTCTCACAGATGCCATAATAATATTTTTCTGTTTTGTTTGATTGCTTTATAGGTTTTGCTTTTATCTACATGGAGGACGAGAGAGATGCTGAGGATGCCATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAAGGCCGCAGACTACGTGTTGAGTGGACCAAAGTAATATATATTGATATGGCACAACTTCCAATGGACTCTTTACTTTCCATCCCTTTGTGGAACTTTTATTTGATTCTATTTACTGTACCTTCAAATTGTATCTCGATCAATCATTCTTTTGCTTTGTAGCAAGAGCGTGGGATTAGAAGACCAGGTGGAGTTGGAGGTGGAGGTGGAGGAGGTTCAAGGAGATCCTCTACTAATACAAGACCTTCAAAGACTTTGTTTGTTATCAACTTTGACCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGCTGACAAACATGAGGTGAGAGTGAGTAGTATGTTCATTTATTGAAGGTTGATTAATTAATCCCCCTTTGCCCCTGTCTCACTCAGACCATCTGAAGGAAAATTTACATTGCTATTTGCATTTGTTATAGACCATCGTGTACATGATCAGTTATTGTTTTGCCTTATAACTATTATTATTGTGTACAGCAAATTGATGGATCGGGTGATTTCGGTGGAATATGCTGTTCGAGATGATGACGATAAGAGAAATGGATATAGTCCTGATAGGAATCGTGATAGGTCTCCTGATAGAAAACGACGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTATTAGCCGCAGTCCATACAGGAGACAAAGGGCCAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGAGAGAGGGAGAGGGGTTCACCTGATTATGGCCGTGGTCGTAGTCCCAATCATAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGTGACCATGTTAGGGCCCCCAGCCATAGTCCTTCACATCAGAGGGAAAGACCAAATGATGACCGAGTCCACAATCGAAGTCCTAGTCCTTACGGGAGAGAAAGGGGGAGTCCTACTAATGGACGTGGCACTAGCTATAGTCCTCGTGATAGAGAGAGGTCGTCAAACCCTGACAATGGTCATGATCAGCAGCAGAATACAGTAGCCGAACCCGGTGAGAGCCCCAGTTATGGTGGCACTCAGAGCCCAAAGCATCGGGGATATGGCAGGTTTGCAGTTTGA

mRNA sequence

TAAGGGTAAAAAAAAGGAAATTAAGAGAGAGAAAACCCTACAAGCGGTACGCACTTGTCAGTTGTCTCTCTCTCGCAATTCCCTTCCCTCTCCGACACCGGCTACTGCGACGGCGACGCGGCTCCTCTGGGGGCACGATCAGGCGACGGCGCAACCCAGCTCAGATCTACCATAGTACCCACCTCTGGCGTTTGATCACCTACGCAACAACCTATCCCGGCCACACGCGGATCTGCAAAGACCTATCCCTCGGGTCGCTGGATCTGCTACAGACACACCTCGACGGCCCGATCTGCGGCGGAAAGTCATTTTGGAGACGATCGAGACTCACGGTAACTAACGCAGTGCTTTAGTTTTCCTTCATTTTCGATTCAGCAAGATCCAAGTCGGCAGCAACATCTTCAAGATCTTGAACCATTAGGAATTGAATCGCATTAAGGACCATAGTAGTATAGTATGAAGCCTATCTTTTGTGGAAACTTCGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGTGAGCTTCTAGCCATAGAATGCCTGTTTTTGTTTTAATTCCTTCTCTTTTTTTCCTAAAATACTTATAAGATGTATACTAGAAACACAGAAGAGAGCGTTTGTGTTCTGTTCCTGAATTTGTTTTGAAATAGTGTATAATTTGTCATGTCCGTACATACCATACCAATTGCACAAAGAAAAAAAATTGTAATTTGCAAAGTTGCTGATAATCTTTAATATATGAAAAGTACTGAACTGAAAAAGCTACTCTCTATCCACTAAGAAAGTGTTGGATTCAACGTCGGCAAGACAACTCAGCTGTTGGAAATTCCTCCAAAGTAGTTCCCGTTGCATTTGGTGCCTTGCAATACGAATGGGCATCATCCAGCGTATGGAAATCAGAGAAGGCAACATTTGTTGAGTTTTTGGTGGAGGATGCTAAAAAAAATTTGAGAAAAGAAGAGCGTATATTTTAAATCCTAAAACTCCTTGGCCAGAATTTTCTTTGGTGCAGGATTTCCTTTGCATATCCATAATCTTCTTGGATAAGGATCGCTCTTCAGAATTGAGTTTTCCGCCTGTGACAAGCTTCCTCTTCTTGTTTCCAAGAAGATTCATACTGATCCTCAATGGCACTACCATCTTACATTTTCCTCAGACACTTTGCTTTCCATTCCTCATGACTTTTGCCTGCCTACAATTTCATACGTTGTTTCAAGGTTGAAACATTGTCAACCTTAGCTCTGAGGCTGCGGAATAATGGAGAAGGCACTTCCTATTTGTAGACCTACCATGAGACATCCTGTTTTGGATTATTGCTCCTTGACACCACTTAGTTCACAACACAAGATGCCACAATTAGTTATTCAGTTTTCGTTGTTTGATTGGTTTCCAGGGTTTGCTTTTATCTACATGGAGGATGAGAGAGAGGCTGAGGATGCTATACGTGCACTCGATCGGAGGGAATTTGGCCGAAAGGGCCGCAGACTACGTGTTGAGTGGACCAAACAAGAGCGTGGCATTAGAAGACCTGGTGGAGGTGGTGGTGGTGGTGGAGGCGGTACGAGGAGATCATCTACTAATACAAGACCTTCAAAGACTTTATTTGTTATTAATTTTGATCCATATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAACTGCAGGAGGATGCCACTAGAGCATTAGAGCTTACAAACATGAGCAAATTGATGGACCGAGTGATTTCTGTGGAATATGCTGTTCGAGATGACGATGAGAAAAGAAATGGGTATAGTCCAGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGGCGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTATTAGCCGCAGTCCATATAGGAGACAAAGGGGTAGTCCTGATTACGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGAGAGAGGGAGAGGGGTTCACCTGATTATGGCCGTGGTCGTAGTCCCAAGCACAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGTGACCATGCTAGGGCCCCTAGCCACAGTCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAATCCCCAACCGAAGTCGCAGTCCTTACGGGAGAGAGAGGGAGAGGGGGAGTCCTACTGATGGACGTGACACTAGCTATAGTCCTCGTGATAGAGAGAGGTCCAACCCTGACAATGGTCATGATCAGCGGCAGAATGCAGTAGCCGAACCGGGTGAGAGCCCCAGTTATGGTGGCACTCAGAGCCCAAAGCATCGGGGATATAACAGGCACACCATCTACGGCGGCCTGCAACTCACGGCCGAAAAAGAGTTTGCTACTCTTCGATTTCTTTTGAAACGGTTTTGCGAACTCTTTGATGTTGCATTTGAATGTATTATGAAGCCGATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAAAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGCAATTCAGCTGTTGGAATTTCCCCCAGAGTAGAGGTCGTTCTCATTGCATTTGGTGCCTTGCAGTACGATTTAGCATCATCCAGCATATGGAAACCAGAGAAGCCGACTTTTGATTTTCTTCGCATTTTCATAATCCTCTTGGATAAAGATGGCTCTTCAGAATTGAGTGTTCCGCCTGGGACAAGCTTCCTCTTCTTGTTTCCAAGAAGATTCATACCGATCCTCAATGGCACCACCATCTTACATTTTCCTCCGACACCTTGCTTTCCAGTTTCCATTCCTCATGACTTTTGCATGCCTACAATCCATACATTGTTTCAAGGTTTTGCTTTTATCTACATGGAGGACGAGAGAGATGCTGAGGATGCCATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAAGGCCGCAGACTACGTGTTGAGTGGACCAAACAAGAGCGTGGGATTAGAAGACCAGGTGGAGTTGGAGGTGGAGGTGGAGGAGGTTCAAGGAGATCCTCTACTAATACAAGACCTTCAAAGACTTTGTTTGTTATCAACTTTGACCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGCTGACAAACATGAGCAAATTGATGGATCGGGTGATTTCGGTGGAATATGCTGTTCGAGATGATGACGATAAGAGAAATGGATATAGTCCTGATAGGAATCGTGATAGGTCTCCTGATAGAAAACGACGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTATTAGCCGCAGTCCATACAGGAGACAAAGGGCCAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGAGAGAGGGAGAGGGGTTCACCTGATTATGGCCGTGGTCGTAGTCCCAATCATAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGTGACCATGTTAGGGCCCCCAGCCATAGTCCTTCACATCAGAGGGAAAGACCAAATGATGACCGAGTCCACAATCGAAGTCCTAGTCCTTACGGGAGAGAAAGGGGGAGTCCTACTAATGGACGTGGCACTAGCTATAGTCCTCGTGATAGAGAGAGGTCGTCAAACCCTGACAATGGTCATGATCAGCAGCAGAATACAGTAGCCGAACCCGGTGAGAGCCCCAGTTATGGTGGCACTCAGAGCCCAAAGCATCGGGGATATGGCAGGTTTGCAGTTTGA

Coding sequence (CDS)

ATGGAGAAGGCACTTCCTATTTGTAGACCTACCATGAGACATCCTGTTTTGGATTATTGCTCCTTGACACCACTTAGTTCACAACACAAGATGCCACAATTAGTTATTCAGTTTTCGTTGTTTGATTGGTTTCCAGGGTTTGCTTTTATCTACATGGAGGATGAGAGAGAGGCTGAGGATGCTATACGTGCACTCGATCGGAGGGAATTTGGCCGAAAGGGCCGCAGACTACGTGTTGAGTGGACCAAACAAGAGCGTGGCATTAGAAGACCTGGTGGAGGTGGTGGTGGTGGTGGAGGCGGTACGAGGAGATCATCTACTAATACAAGACCTTCAAAGACTTTATTTGTTATTAATTTTGATCCATATCATACTAGGACAAGAGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAACTGCAGGAGGATGCCACTAGAGCATTAGAGCTTACAAACATGAGCAAATTGATGGACCGAGTGATTTCTGTGGAATATGCTGTTCGAGATGACGATGAGAAAAGAAATGGGTATAGTCCAGATAGGAATCGTGATAGGTCTCCCGATAGAAAACGGCGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTATTAGCCGCAGTCCATATAGGAGACAAAGGGGTAGTCCTGATTACGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGAGAGAGGGAGAGGGGTTCACCTGATTATGGCCGTGGTCGTAGTCCCAAGCACAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGTGACCATGCTAGGGCCCCTAGCCACAGTCCTCCCCATCAGAGGGAAAGACCAAATGATGACCGAATCCCCAACCGAAGTCGCAGTCCTTACGGGAGAGAGAGGGAGAGGGGGAGTCCTACTGATGGACGTGACACTAGCTATAGTCCTCGTGATAGAGAGAGGTCCAACCCTGACAATGGTCATGATCAGCGGCAGAATGCAGTAGCCGAACCGGGTGAGAGCCCCAGTTATGGTGGCACTCAGAGCCCAAAGCATCGGGGATATAACAGGCACACCATCTACGGCGGCCTGCAACTCACGGCCGAAAAAGAGTTTGCTACTCTTCGATTTCTTTTGAAACGGTTTTGCGAACTCTTTGATGTTGCATTTGAATGTATTATGAAGCCGATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATTTGGAAAGACTGTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTGGCAATTCAGCTGTTGGAATTTCCCCCAGAGTAGAGGTCGTTCTCATTGCATTTGGTGCCTTGCAGTACGATTTAGCATCATCCAGCATATGGAAACCAGAGAAGCCGACTTTTGATTTTCTTCGCATTTTCATAATCCTCTTGGATAAAGATGGCTCTTCAGAATTGAGTGTTCCGCCTGGGACAAGCTTCCTCTTCTTGTTTCCAAGAAGATTCATACCGATCCTCAATGGCACCACCATCTTACATTTTCCTCCGACACCTTGCTTTCCAGTTTCCATTCCTCATGACTTTTGCATGCCTACAATCCATACATTGTTTCAAGGTTTTGCTTTTATCTACATGGAGGACGAGAGAGATGCTGAGGATGCCATCCGTGCACTTGATCGGAGAGAATTTGGTCGAAAAGGCCGCAGACTACGTGTTGAGTGGACCAAACAAGAGCGTGGGATTAGAAGACCAGGTGGAGTTGGAGGTGGAGGTGGAGGAGGTTCAAGGAGATCCTCTACTAATACAAGACCTTCAAAGACTTTGTTTGTTATCAACTTTGACCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAGTGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGCTGACAAACATGAGCAAATTGATGGATCGGGTGATTTCGGTGGAATATGCTGTTCGAGATGATGACGATAAGAGAAATGGATATAGTCCTGATAGGAATCGTGATAGGTCTCCTGATAGAAAACGACGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTATTAGCCGCAGTCCATACAGGAGACAAAGGGCCAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTATCAGAGAGAGAGGGAGAGGGGTTCACCTGATTATGGCCGTGGTCGTAGTCCCAATCATAGTCCTTATAGGAGGGAGAGAGAGAGATCAAGTGACCATGTTAGGGCCCCCAGCCATAGTCCTTCACATCAGAGGGAAAGACCAAATGATGACCGAGTCCACAATCGAAGTCCTAGTCCTTACGGGAGAGAAAGGGGGAGTCCTACTAATGGACGTGGCACTAGCTATAGTCCTCGTGATAGAGAGAGGTCGTCAAACCCTGACAATGGTCATGATCAGCAGCAGAATACAGTAGCCGAACCCGGTGAGAGCCCCAGTTATGGTGGCACTCAGAGCCCAAAGCATCGGGGATATGGCAGGTTTGCAGTTTGA

Protein sequence

MEKALPICRPTMRHPVLDYCSLTPLSSQHKMPQLVIQFSLFDWFPGFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGTRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRGSPDYGSRRSPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDHARAPSHSPPHQRERPNDDRIPNRSRSPYGRERERGSPTDGRDTSYSPRDRERSNPDNGHDQRQNAVAEPGESPSYGGTQSPKHRGYNRHTIYGGLQLTAEKEFATLRFLLKRFCELFDVAFECIMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDLASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFPPTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPYGRERGSPTNGRGTSYSPRDRERSSNPDNGHDQQQNTVAEPGESPSYGGTQSPKHRGYGRFAV

Homology

[Close]

BLAST of Lsi05G005410 vs. ExPASy Swiss-Prot
Match: P92965 (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 345.9 bits (886), Expect = 1.3e-93
Identity = 227/465 (48.82%), Postives = 273/465 (58.71%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+                         
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAF+YMEDERDAEDAIRALDR EFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWT 180

Query: 586 KQERGIRRPGGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILS 645
           K ERG  +        GGGSRRSS++ RPSKTLFVINFD  +TRTRDLE+HF+PYGKI++
Sbjct: 181 KSERGGDK------RSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVN 240

Query: 646 VRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRS 705
           VRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+DDD + NG+SP+R RDRS
Sbjct: 241 VRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRS 300

Query: 706 PDRKRRSPSPYRRERGSPDYGNGISR-SPYRRQRASPDYGSRRSPSPYQRERERGSPDYG 765
           P+R+RRSPSPY+RERGSPDYG G S  + YR++R SPDYG RRSPSPY++ R RGSP+YG
Sbjct: 301 PERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYG 339

Query: 766 RGRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPYGRERGSPTNGRG 825
           R R  N SP RRER  S       S SP+++RER + +       SP+ +E  SP NG G
Sbjct: 361 RDRRGNDSPRRRERVASPTKY---SRSPNNKRERMSPNH------SPFKKE--SPRNGVG 339

Query: 826 TSYSPRD-RERS-SNPDNGHDQQQNTVAEPGESPSYGGTQSPKHR 868
              SP + RERS S+P+NG  +   ++        Y G +SP  +
Sbjct: 421 EVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQK 339

[Close]

BLAST of Lsi05G005410 vs. ExPASy Swiss-Prot
Match: P92966 (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 313.9 bits (803), Expect = 5.6e-84
Identity = 195/326 (59.82%), Postives = 223/326 (68.40%), Query Frame = 0


Query: 42  DWFPGFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGG 101
           D   GFAF+YMEDER+AEDAIRALDR E+GR GRRLRVEWTK +R       GG G  GG
Sbjct: 32  DMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDR-------GGAGRSGG 91

Query: 102 TRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDAT 161
           +RRSS+  RPSKTLFVINFD  +TRTRDLERHF+PYGKI+NVRIRRNFAF+QYE QEDAT
Sbjct: 92  SRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDAT 151

Query: 162 RALELTNMSKLMDRVISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPD 221
           RAL+ TN SKLMD+VISVEYAV+DDD + NGYSP+R RDRSPDR+RRSPSPYRRERGSPD
Sbjct: 152 RALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPD 211

Query: 222 YGNGISRSPYRRQRGSPDYG-SRRSPSPYQRERERGSPDY---GRGRSPKHSPYR-RERE 281
           YG G S   ++R+R SPDYG  RRSPSPY+R R   SPDY    R R    SP     R 
Sbjct: 212 YGRGASPVAHKRERTSPDYGRGRRSPSPYKRARL--SPDYKRDDRRRERVASPENGAVRN 271

Query: 282 RSSDHARAPSHSPPHQRERPNDDRIPNRSRSPYGRERERGSPTDGRDTSYSPRDRERSNP 341
           RS    R  S SPP     P + R  +RS  PY + RE  SP          R R +S+P
Sbjct: 272 RSPRKGRGESRSPP-----PYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSP 331

Query: 342 DNGHDQRQNAVAEPGESPSYGGTQSP 363
           +NG  +    + E      Y G  SP
Sbjct: 332 ENGQVESPGQIMEVEAGRGYDGADSP 343

[Close]

BLAST of Lsi05G005410 vs. ExPASy Swiss-Prot
Match: P92964 (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-56
Identity = 162/409 (39.61%), Postives = 200/409 (48.90%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKS                         
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  G+AF+Y EDERDAEDAIR LD   FG + RRL VEW 
Sbjct: 121 -----------------------GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWA 180

Query: 586 KQERGIRRPGGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILS 645
           K ERG  R          G  ++ +N +P+KTLFVINFDP  T+  D+E+HF+PYGK+ +
Sbjct: 181 KGERGRPR----------GDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTN 240

Query: 646 VRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRS 705
           VRIRRNF+FVQ+E QEDAT+ALE T  SK++DRV+SVEYA++DDD++      DRN  RS
Sbjct: 241 VRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER-----DDRNGGRS 263

Query: 706 PDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGR 765
           P   RRS SP  R R SPDYG     SP + +R SPDYG  RSP   + +R +G   Y R
Sbjct: 301 P---RRSLSPVYRRRPSPDYGR--RPSPGQGRRPSPDYGRARSP---EYDRYKGPAAYER 263

Query: 766 GRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPYGR 815
            RSP++        RSSD+ R  S         P  DR  +RSP P GR
Sbjct: 361 RRSPDYG------RRSSDYGRQRS---------PGYDRYRSRSPVPRGR 263

[Close]

BLAST of Lsi05G005410 vs. ExPASy Swiss-Prot
Match: Q9ZPX8 (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.5e-49
Identity = 148/412 (35.92%), Postives = 190/412 (46.12%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           M+ ++ GNF+YD R  DLERLFS++G+V RVDMKS                         
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  G+AF+Y EDERDAEDAIR  D   FG   R+L VEW 
Sbjct: 121 -----------------------GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWA 180

Query: 586 KQERGIRRPGGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILS 645
           K  +G R        G     ++ +N RP+KTLFVINFDP  TR RD+ERHF+PYGK+L+
Sbjct: 181 KDFQGER--------GKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLN 240

Query: 646 VRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRS 705
           VR+RRNFAFVQ+  QEDAT+AL+ T+ SKL+D+V+SVEYA+R+  ++ + Y        +
Sbjct: 241 VRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRY--------A 250

Query: 706 PDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGR 765
             R+RRSPSP  R R SPDY           +R SP+Y   + P+PY+R   R SPDYGR
Sbjct: 301 GSRRRRSPSPVYRRRPSPDY----------TRRRSPEYDRYKGPAPYER---RKSPDYGR 250

Query: 766 GRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPYGRERG 818
                         RSSD+ RA + SP + R R           SP  R RG
Sbjct: 361 --------------RSSDYGRARARSPGYDRSR-----------SPIQRARG 250

[Close]

BLAST of Lsi05G005410 vs. ExPASy Swiss-Prot
Match: Q0VCY7 (Serine/arginine-rich splicing factor 1 OS=Bos taurus OX=9913 GN=SRSF1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-11
Identity = 70/197 (35.53%), Postives = 95/197 (48.22%), Query Frame = 0


Query: 45  PGFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGTRR 104
           P FAF+  ED R+AEDA+   D  ++   G RLRVE+ +  RG  R GGGGGGGG    R
Sbjct: 54  PPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGR 113

Query: 105 SSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRN-FAFVQYELQEDATRA 164
               +R S+   V++  P     +DL+ H    G +    + R+    V++  +ED T A
Sbjct: 114 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYA 173

Query: 165 LELTNMSKLMDRVISVEY-AVRDDDEKRNGYSPDRNRDRSPDRKR-------RSPSPYRR 224
           +   + +K         Y  V+ D  +   Y   R+R RS  R R       RS SP RR
Sbjct: 174 VRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RR 233

Query: 225 ERGSPDYGNGISRSPYR 233
            RGSP Y    SRS  R
Sbjct: 234 SRGSPRYSPRHSRSRSR 247

[Close]

BLAST of Lsi05G005410 vs. ExPASy TrEMBL
Match: A0A1S4DXA1 (serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491067 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 5.3e-170
Identity = 346/477 (72.54%), Postives = 350/477 (73.38%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 180

Query: 586 KQERGIRRP------GGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 645
           KQERGIRRP      GG GGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP
Sbjct: 181 KQERGIRRPGGGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 240

Query: 646 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 705
           YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD
Sbjct: 241 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 300

Query: 706 RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 765
           RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG
Sbjct: 301 RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 360

Query: 766 SPDYGRGRSPNHSPYRRERERSSDHVR-APSHSPSHQRERPNDDRVHNRSPSPYGRER-- 825
           SPDYGRGRSPNHSPYRRERERSSDHVR APS+ P+HQRERPNDDRV NRSPSPYGRER  
Sbjct: 361 SPDYGRGRSPNHSPYRRERERSSDHVRGAPSNRPTHQRERPNDDRVPNRSPSPYGREREK 369

Query: 826 GSPTNGRGTSYSPRDRERSSNPDN----GHDQQQNTVAEPGESPSYGGTQSPKHRGY 870
           GSPT+GRGTSYSPRDRERSSNPDN    GHDQQQN V EPGESP+YG TQSPKHRGY
Sbjct: 421 GSPTDGRGTSYSPRDRERSSNPDNGHDHGHDQQQNMVPEPGESPNYGDTQSPKHRGY 369

[Close]

BLAST of Lsi05G005410 vs. ExPASy TrEMBL
Match: A0A5A7VJB8 (Serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002140 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 5.3e-170
Identity = 346/477 (72.54%), Postives = 350/477 (73.38%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 180

Query: 586 KQERGIRRP------GGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 645
           KQERGIRRP      GG GGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP
Sbjct: 181 KQERGIRRPGGGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 240

Query: 646 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 705
           YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD
Sbjct: 241 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 300

Query: 706 RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 765
           RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG
Sbjct: 301 RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 360

Query: 766 SPDYGRGRSPNHSPYRRERERSSDHVR-APSHSPSHQRERPNDDRVHNRSPSPYGRER-- 825
           SPDYGRGRSPNHSPYRRERERSSDHVR APS+ P+HQRERPNDDRV NRSPSPYGRER  
Sbjct: 361 SPDYGRGRSPNHSPYRRERERSSDHVRGAPSNRPTHQRERPNDDRVPNRSPSPYGREREK 369

Query: 826 GSPTNGRGTSYSPRDRERSSNPDN----GHDQQQNTVAEPGESPSYGGTQSPKHRGY 870
           GSPT+GRGTSYSPRDRERSSNPDN    GHDQQQN V EPGESP+YG TQSPKHRGY
Sbjct: 421 GSPTDGRGTSYSPRDRERSSNPDNGHDHGHDQQQNMVPEPGESPNYGDTQSPKHRGY 369

[Close]

BLAST of Lsi05G005410 vs. ExPASy TrEMBL
Match: A0A5D3BC56 (Serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002150 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 5.3e-170
Identity = 326/373 (87.40%), Postives = 336/373 (90.08%), Query Frame = 0


Query: 1   MEKALPICRPTMRHPVLDYCSLTPLSSQHKMPQLVIQFSLFDWFPG----FAFIYMEDER 60
           MEKAL ICRPTMRHPV  +CSLTPLSSQ+K     +     ++F G    FAFIYMEDER
Sbjct: 1   MEKALSICRPTMRHPVF-HCSLTPLSSQYK-----VMLHFEEFFSGKILRFAFIYMEDER 60

Query: 61  EAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGTRRSSTNTRPSKTLF 120
           EAEDAI ALDRREFGRKGRRLRVEWTKQERGIRRP GGGGG GGG+RRSS+NTRPSKTLF
Sbjct: 61  EAEDAIHALDRREFGRKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRRSSSNTRPSKTLF 120

Query: 121 VINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALELTNMSKLMDRV 180
           VINFDPYHTR RDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALE+TNMSKLMDRV
Sbjct: 121 VINFDPYHTRIRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRV 180

Query: 181 ISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRG 240
           ISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQR 
Sbjct: 181 ISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRT 240

Query: 241 SPDYGSRRSPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDHARAPSHSPPHQRERP 300
           SPDYGSRRSPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDH RAPS SP HQRERP
Sbjct: 241 SPDYGSRRSPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDHTRAPSRSPLHQRERP 300

Query: 301 NDDRIPNRSRSPYGRERERGSP-TDGRDTSYSPRDRERSNPDNGHDQRQNAVAEPGESPS 360
           N DRIPNRS SPY RERER SP  DGR TSYSPRDRERSNPDNGHD ++N VAEPGE PS
Sbjct: 301 NGDRIPNRSPSPYRRERERRSPIDDGRGTSYSPRDRERSNPDNGHDHQENTVAEPGECPS 360

Query: 361 YGGTQSPKHRGYN 369
           Y GTQSPKHRGYN
Sbjct: 361 YSGTQSPKHRGYN 367

[Close]

BLAST of Lsi05G005410 vs. ExPASy TrEMBL
Match: A0A0A0L2A0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063650 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 3.5e-169
Identity = 344/477 (72.12%), Postives = 348/477 (72.96%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 180

Query: 586 KQERGIRRP------GGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 645
           KQERGIRRP      GG GGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP
Sbjct: 181 KQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 240

Query: 646 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 705
           YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD
Sbjct: 241 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 300

Query: 706 RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 765
           RNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG
Sbjct: 301 RNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 360

Query: 766 SPDYGRGRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPY--GRERG 825
           SPDYGRGRSPNHSPYRRERERSSDHVR PSH PSHQRERPNDDRV NRSPSPY  GRE+G
Sbjct: 361 SPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNRSPSPYGRGREKG 368

Query: 826 SPTNGRGTSYSPRDRERSSNPDN----GHDQQQNTVAEPGESPSYGGTQSPKHRGYG 871
           SP +GRGTSYSPRDRERSSNPDN    GHDQQQ T+ EPGESP+YGGTQSPK RGYG
Sbjct: 421 SP-DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQSPKRRGYG 368

[Close]

BLAST of Lsi05G005410 vs. ExPASy TrEMBL
Match: A0A0A0L7I3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063660 PE=4 SV=1)

HSP 1 Score: 594.0 bits (1530), Expect = 1.0e-165
Identity = 331/466 (71.03%), Postives = 338/466 (72.53%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAFIYMEDER+AEDAI ALDRREFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFIYMEDEREAEDAIHALDRREFGRKGRRLRVEWT 180

Query: 586 KQERGIRRPGGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILS 645
           KQERGIRRP G GGG GGGSRRSSTNTRPSKTLFVINFDPYHTR RDLERHFDPYGKIL+
Sbjct: 181 KQERGIRRPSGGGGGSGGGSRRSSTNTRPSKTLFVINFDPYHTRIRDLERHFDPYGKILN 240

Query: 646 VRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRS 705
           VRIRRNFAFVQYELQEDATRALE+TNMSKLMDRVISVEYAVRDDD+KRNGYSPDRNRDRS
Sbjct: 241 VRIRRNFAFVQYELQEDATRALEVTNMSKLMDRVISVEYAVRDDDEKRNGYSPDRNRDRS 300

Query: 706 PDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYGR 765
           PDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDY R
Sbjct: 301 PDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDYSR 357

Query: 766 GRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPY--GRERGSPTNGR 825
           GRSP HSPYRRERERSSDH+RAPSHSP HQRERPNDDR+ NRSPSPY   RERGSP  GR
Sbjct: 361 GRSPKHSPYRRERERSSDHIRAPSHSPPHQRERPNDDRIPNRSPSPYRRERERGSPIGGR 357

Query: 826 GTSYSPRDRERSSNPDNGHDQQQNTVAEPGESPSYGGTQSPKHRGY 870
           G SYSPRDRER  NPDNGHD Q+NTVAEPGE PSY GTQSPKHRGY
Sbjct: 421 GRSYSPRDRER-LNPDNGHDHQENTVAEPGECPSYSGTQSPKHRGY 357

[Close]

BLAST of Lsi05G005410 vs. NCBI nr
Match: KAG6577485.1 (Serine/arginine-rich splicing factor RS40, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 985.3 bits (2546), Expect = 3.3e-283
Identity = 578/843 (68.56%), Postives = 599/843 (71.06%), Query Frame = 0


Query: 42  DWFPGFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGG 101
           D   GFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRP  GGG GGG 
Sbjct: 174 DMKSGFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRP--GGGRGGGD 233

Query: 102 TRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDAT 161
           +RRSSTNT+PSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDAT
Sbjct: 234 SRRSSTNTKPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDAT 293

Query: 162 RALELTNMSKLMDRVISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPD 221
           RALE+TNMSKLMDRVISVEYAVRDDDEKRNGYSPDR RDRSPDRKRRSPSPYRRERGSPD
Sbjct: 294 RALEITNMSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGSPD 353

Query: 222 YGNGISRSPYRRQRGSPDYGSRRSPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDH 281
           YGNG+SRSPYR+ R SPDYGSRRSPSPYQR RERGSP+YGRGRSP  SPYRRERERSSDH
Sbjct: 354 YGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERSSDH 413

Query: 282 ARAPSHS-----------------------PPHQRERPNDDRIPNRSRSPYGRERERGSP 341
           ARAPSHS                       PPHQRERPN DR  +   SPYG  RERGSP
Sbjct: 414 ARAPSHSPYRRERERERSSDHARAPSHSPPPPHQRERPNGDRAHSGIHSPYG--RERGSP 473

Query: 342 TDGRDTSYSPRDRERSNPDNGHDQRQNAVAEPGESPSYGGTQSPKHRGYNRHTIYGGLQL 401
           TD R TSYSPRDRER+                    S G  ++   +  N   +    +L
Sbjct: 474 TDERRTSYSPRDRERAR-------------------SIGAIRAVHLKQRNEEYLQSESRL 533

Query: 402 TAEKEFATLRFLLKRFCELFDVAFECIMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDM 461
                         R   LF       MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDM
Sbjct: 534 --------------RLVGLFGSG---SMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDM 593

Query: 462 KSGNSAVGISPRVEVVLIAFGALQYDLASSSIWKPEKPTFDFLRIFIILLDKDGSSELSV 521
           KS                                                          
Sbjct: 594 KS---------------------------------------------------------- 653

Query: 522 PPGTSFLFLFPRRFIPILNGTTILHFPPTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDE 581
                                                             GFAFIYMEDE
Sbjct: 654 --------------------------------------------------GFAFIYMEDE 713

Query: 582 RDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGVGGGGGGGSRRSSTNTRPSKTL 641
           RDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGG GGGGGGGSRRSSTNTRPSKTL
Sbjct: 714 RDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGSRRSSTNTRPSKTL 773

Query: 642 FVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDR 701
           FVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALE+TNMSKLMDR
Sbjct: 774 FVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALEVTNMSKLMDR 833

Query: 702 VISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQR 761
           VISVEYAVRDDD+KRNG+SPDRNRDRSPDRKRRSPSPY+RERGSPDYGNGI+RSPYRRQR
Sbjct: 834 VISVEYAVRDDDEKRNGFSPDRNRDRSPDRKRRSPSPYKRERGSPDYGNGITRSPYRRQR 868

Query: 762 ASPDYGSRRSPSPYQ--RERERGSPDY---------------------GRGRSPNHSPYR 821
           ASPDYGSRRSPSPYQ  RERERGSPDY                     GRGRSPN SPYR
Sbjct: 894 ASPDYGSRRSPSPYQRERERERGSPDYGRGRSPNQSPYRRERERSSDHGRGRSPNQSPYR 868

Query: 822 RERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPYGRERGSP-TNGRGTSYSPRDRER 838
           RERERSSDH RAPSHSP HQRERPNDDRV NRS SPYGRERGSP T+GRGTSYSPRDRER
Sbjct: 954 RERERSSDHARAPSHSPPHQRERPNDDRVRNRSRSPYGRERGSPTTDGRGTSYSPRDRER 868

[Close]

BLAST of Lsi05G005410 vs. NCBI nr
Match: XP_038904888.1 (serine/arginine-rich splicing factor RS40-like isoform X1 [Benincasa hispida])

HSP 1 Score: 641.0 bits (1652), Expect = 1.5e-179
Identity = 353/467 (75.59%), Postives = 354/467 (75.80%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 180

Query: 586 KQERGIRRPGGV--GGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKI 645
           KQERGIRRPGGV  GGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKI
Sbjct: 181 KQERGIRRPGGVGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKI 240

Query: 646 LSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRD 705
           LSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRD
Sbjct: 241 LSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRD 300

Query: 706 RSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDY 765
           RSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDY
Sbjct: 301 RSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERGSPDY 359

Query: 766 GRGRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPYGRERGSPTNGR 825
           GRGRSPNHSPYRRERERSSD VRAPSHSP HQRERPNDDRVHNRSPSPYGRERGSPT+GR
Sbjct: 361 GRGRSPNHSPYRRERERSSDRVRAPSHSPPHQRERPNDDRVHNRSPSPYGRERGSPTDGR 359

Query: 826 GTSYSPRDRERSSNPDNGHDQQQNTVAEPGESPSYGGTQSPKHRGYG 871
           GTSYSPRDRERSSNPDNGHDQQQNTV EPGESPSYGGTQSPKHRGYG
Sbjct: 421 GTSYSPRDRERSSNPDNGHDQQQNTVVEPGESPSYGGTQSPKHRGYG 359

[Close]

BLAST of Lsi05G005410 vs. NCBI nr
Match: TYJ96554.1 (serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 608.2 bits (1567), Expect = 1.1e-169
Identity = 326/373 (87.40%), Postives = 336/373 (90.08%), Query Frame = 0


Query: 1   MEKALPICRPTMRHPVLDYCSLTPLSSQHKMPQLVIQFSLFDWFPG----FAFIYMEDER 60
           MEKAL ICRPTMRHPV  +CSLTPLSSQ+K     +     ++F G    FAFIYMEDER
Sbjct: 1   MEKALSICRPTMRHPVF-HCSLTPLSSQYK-----VMLHFEEFFSGKILRFAFIYMEDER 60

Query: 61  EAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGGTRRSSTNTRPSKTLF 120
           EAEDAI ALDRREFGRKGRRLRVEWTKQERGIRRP GGGGG GGG+RRSS+NTRPSKTLF
Sbjct: 61  EAEDAIHALDRREFGRKGRRLRVEWTKQERGIRRPSGGGGGSGGGSRRSSSNTRPSKTLF 120

Query: 121 VINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALELTNMSKLMDRV 180
           VINFDPYHTR RDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALE+TNMSKLMDRV
Sbjct: 121 VINFDPYHTRIRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEVTNMSKLMDRV 180

Query: 181 ISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRG 240
           ISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQR 
Sbjct: 181 ISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRT 240

Query: 241 SPDYGSRRSPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDHARAPSHSPPHQRERP 300
           SPDYGSRRSPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDH RAPS SP HQRERP
Sbjct: 241 SPDYGSRRSPSPYQRERERGSPDYGRGRSPKHSPYRRERERSSDHTRAPSRSPLHQRERP 300

Query: 301 NDDRIPNRSRSPYGRERERGSP-TDGRDTSYSPRDRERSNPDNGHDQRQNAVAEPGESPS 360
           N DRIPNRS SPY RERER SP  DGR TSYSPRDRERSNPDNGHD ++N VAEPGE PS
Sbjct: 301 NGDRIPNRSPSPYRRERERRSPIDDGRGTSYSPRDRERSNPDNGHDHQENTVAEPGECPS 360

Query: 361 YGGTQSPKHRGYN 369
           Y GTQSPKHRGYN
Sbjct: 361 YSGTQSPKHRGYN 367

[Close]

BLAST of Lsi05G005410 vs. NCBI nr
Match: XP_008449100.1 (PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo] >XP_016900609.1 PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo] >KAA0065815.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo var. makuwa] >TYJ96553.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 608.2 bits (1567), Expect = 1.1e-169
Identity = 346/477 (72.54%), Postives = 350/477 (73.38%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 180

Query: 586 KQERGIRRP------GGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 645
           KQERGIRRP      GG GGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP
Sbjct: 181 KQERGIRRPGGGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 240

Query: 646 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 705
           YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD
Sbjct: 241 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 300

Query: 706 RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 765
           RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG
Sbjct: 301 RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 360

Query: 766 SPDYGRGRSPNHSPYRRERERSSDHVR-APSHSPSHQRERPNDDRVHNRSPSPYGRER-- 825
           SPDYGRGRSPNHSPYRRERERSSDHVR APS+ P+HQRERPNDDRV NRSPSPYGRER  
Sbjct: 361 SPDYGRGRSPNHSPYRRERERSSDHVRGAPSNRPTHQRERPNDDRVPNRSPSPYGREREK 369

Query: 826 GSPTNGRGTSYSPRDRERSSNPDN----GHDQQQNTVAEPGESPSYGGTQSPKHRGY 870
           GSPT+GRGTSYSPRDRERSSNPDN    GHDQQQN V EPGESP+YG TQSPKHRGY
Sbjct: 421 GSPTDGRGTSYSPRDRERSSNPDNGHDHGHDQQQNMVPEPGESPNYGDTQSPKHRGY 369

[Close]

BLAST of Lsi05G005410 vs. NCBI nr
Match: XP_004149583.1 (serine/arginine-rich splicing factor RS40 isoform X1 [Cucumis sativus] >KGN56065.1 hypothetical protein Csa_011545 [Cucumis sativus])

HSP 1 Score: 605.5 bits (1560), Expect = 7.1e-169
Identity = 344/477 (72.12%), Postives = 348/477 (72.96%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS                         
Sbjct: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 180

Query: 586 KQERGIRRP------GGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 645
           KQERGIRRP      GG GGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP
Sbjct: 181 KQERGIRRPGPGGGGGGGGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDP 240

Query: 646 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 705
           YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD
Sbjct: 241 YGKILSVRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPD 300

Query: 706 RNRDRSPDRKRRSPSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 765
           RNRDRSPDRKRRS SPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG
Sbjct: 301 RNRDRSPDRKRRSSSPYRRERGSPDYGNGISRSPYRRQRASPDYGSRRSPSPYQRERERG 360

Query: 766 SPDYGRGRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPY--GRERG 825
           SPDYGRGRSPNHSPYRRERERSSDHVR PSH PSHQRERPNDDRV NRSPSPY  GRE+G
Sbjct: 361 SPDYGRGRSPNHSPYRRERERSSDHVRTPSHRPSHQRERPNDDRVPNRSPSPYGRGREKG 368

Query: 826 SPTNGRGTSYSPRDRERSSNPDN----GHDQQQNTVAEPGESPSYGGTQSPKHRGYG 871
           SP +GRGTSYSPRDRERSSNPDN    GHDQQQ T+ EPGESP+YGGTQSPK RGYG
Sbjct: 421 SP-DGRGTSYSPRDRERSSNPDNGHDHGHDQQQTTIPEPGESPNYGGTQSPKRRGYG 368

[Close]

BLAST of Lsi05G005410 vs. TAIR 10
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 345.9 bits (886), Expect = 9.5e-95
Identity = 227/465 (48.82%), Postives = 273/465 (58.71%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+                         
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAF+YMEDERDAEDAIRALDR EFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWT 180

Query: 586 KQERGIRRPGGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILS 645
           K ERG  +        GGGSRRSS++ RPSKTLFVINFD  +TRTRDLE+HF+PYGKI++
Sbjct: 181 KSERGGDK------RSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVN 240

Query: 646 VRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRS 705
           VRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+DDD + NG+SP+R RDRS
Sbjct: 241 VRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRS 300

Query: 706 PDRKRRSPSPYRRERGSPDYGNGISR-SPYRRQRASPDYGSRRSPSPYQRERERGSPDYG 765
           P+R+RRSPSPY+RERGSPDYG G S  + YR++R SPDYG RRSPSPY++ R RGSP+YG
Sbjct: 301 PERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYG 339

Query: 766 RGRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPYGRERGSPTNGRG 825
           R R  N SP RRER  S       S SP+++RER + +       SP+ +E  SP NG G
Sbjct: 361 RDRRGNDSPRRRERVASPTKY---SRSPNNKRERMSPNH------SPFKKE--SPRNGVG 339

Query: 826 TSYSPRD-RERS-SNPDNGHDQQQNTVAEPGESPSYGGTQSPKHR 868
              SP + RERS S+P+NG  +   ++        Y G +SP  +
Sbjct: 421 EVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQK 339

[Close]

BLAST of Lsi05G005410 vs. TAIR 10
Match: AT4G25500.4 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 345.9 bits (886), Expect = 9.5e-95
Identity = 227/465 (48.82%), Postives = 273/465 (58.71%), Query Frame = 0


Query: 406 MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGNSAVGISPRVEVVLIAFGALQYDL 465
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+                         
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA------------------------- 60

Query: 466 ASSSIWKPEKPTFDFLRIFIILLDKDGSSELSVPPGTSFLFLFPRRFIPILNGTTILHFP 525
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 526 PTPCFPVSIPHDFCMPTIHTLFQGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWT 585
                                  GFAF+YMEDERDAEDAIRALDR EFGRKGRRLRVEWT
Sbjct: 121 -----------------------GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWT 180

Query: 586 KQERGIRRPGGVGGGGGGGSRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILS 645
           K ERG  +        GGGSRRSS++ RPSKTLFVINFD  +TRTRDLE+HF+PYGKI++
Sbjct: 181 KSERGGDK------RSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVN 240

Query: 646 VRIRRNFAFVQYELQEDATRALELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRS 705
           VRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+DDD + NG+SP+R RDRS
Sbjct: 241 VRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRS 300

Query: 706 PDRKRRSPSPYRRERGSPDYGNGISR-SPYRRQRASPDYGSRRSPSPYQRERERGSPDYG 765
           P+R+RRSPSPY+RERGSPDYG G S  + YR++R SPDYG RRSPSPY++ R RGSP+YG
Sbjct: 301 PERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYG 339

Query: 766 RGRSPNHSPYRRERERSSDHVRAPSHSPSHQRERPNDDRVHNRSPSPYGRERGSPTNGRG 825
           R R  N SP RRER  S       S SP+++RER + +       SP+ +E  SP NG G
Sbjct: 361 RDRRGNDSPRRRERVASPTKY---SRSPNNKRERMSPNH------SPFKKE--SPRNGVG 339

Query: 826 TSYSPRD-RERS-SNPDNGHDQQQNTVAEPGESPSYGGTQSPKHR 868
              SP + RERS S+P+NG  +   ++        Y G +SP  +
Sbjct: 421 EVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQK 339

[Close]

BLAST of Lsi05G005410 vs. TAIR 10
Match: AT4G25500.3 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 330.9 bits (847), Expect = 3.2e-90
Identity = 200/323 (61.92%), Postives = 241/323 (74.61%), Query Frame = 0


Query: 548 QGFAFIYMEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGVGGGGGGGSRR 607
           QGFAF+YMEDERDAEDAIRALDR EFGRKGRRLRVEWTK ERG  +        GGGSRR
Sbjct: 2   QGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDK------RSGGGSRR 61

Query: 608 SSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRAL 667
           SS++ RPSKTLFVINFD  +TRTRDLE+HF+PYGKI++VRIRRNFAF+QYE QEDATRAL
Sbjct: 62  SSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRAL 121

Query: 668 ELTNMSKLMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGN 727
           + +N SKLMD+VISVEYAV+DDD + NG+SP+R RDRSP+R+RRSPSPY+RERGSPDYG 
Sbjct: 122 DASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGR 181

Query: 728 GISR-SPYRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVR 787
           G S  + YR++R SPDYG RRSPSPY++ R RGSP+YGR R  N SP RRER  S     
Sbjct: 182 GASPVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVASPTKY- 241

Query: 788 APSHSPSHQRERPNDDRVHNRSPSPYGRERGSPTNGRGTSYSPRD-RERS-SNPDNGHDQ 847
             S SP+++RER + +       SP+ +E  SP NG G   SP + RERS S+P+NG  +
Sbjct: 242 --SRSPNNKRERMSPNH------SPFKKE--SPRNGVGEVESPIERRERSRSSPENGQVE 301

Query: 848 QQNTVAEPGESPSYGGTQSPKHR 868
              ++        Y G +SP  +
Sbjct: 302 SPGSIGRRDSDGGYDGAESPMQK 306

[Close]

BLAST of Lsi05G005410 vs. TAIR 10
Match: AT4G25500.2 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 316.2 bits (809), Expect = 8.1e-86
Identity = 194/316 (61.39%), Postives = 234/316 (74.05%), Query Frame = 0


Query: 555 MEDERDAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGVGGGGGGGSRRSSTNTRP 614
           MEDERDAEDAIRALDR EFGRKGRRLRVEWTK ERG  +        GGGSRRSS++ RP
Sbjct: 1   MEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDK------RSGGGSRRSSSSMRP 60

Query: 615 SKTLFVINFDPYHTRTRDLERHFDPYGKILSVRIRRNFAFVQYELQEDATRALELTNMSK 674
           SKTLFVINFD  +TRTRDLE+HF+PYGKI++VRIRRNFAF+QYE QEDATRAL+ +N SK
Sbjct: 61  SKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSK 120

Query: 675 LMDRVISVEYAVRDDDDKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPDYGNGISR-SP 734
           LMD+VISVEYAV+DDD + NG+SP+R RDRSP+R+RRSPSPY+RERGSPDYG G S  + 
Sbjct: 121 LMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAA 180

Query: 735 YRRQRASPDYGSRRSPSPYQRERERGSPDYGRGRSPNHSPYRRERERSSDHVRAPSHSPS 794
           YR++R SPDYG RRSPSPY++ R RGSP+YGR R  N SP RRER  S       S SP+
Sbjct: 181 YRKERTSPDYGRRRSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVASPTKY---SRSPN 240

Query: 795 HQRERPNDDRVHNRSPSPYGRERGSPTNGRGTSYSPRD-RERS-SNPDNGHDQQQNTVAE 854
           ++RER + +       SP+ +E  SP NG G   SP + RERS S+P+NG  +   ++  
Sbjct: 241 NKRERMSPNH------SPFKKE--SPRNGVGEVESPIERRERSRSSPENGQVESPGSIGR 298

Query: 855 PGESPSYGGTQSPKHR 868
                 Y G +SP  +
Sbjct: 301 RDSDGGYDGAESPMQK 298

[Close]

BLAST of Lsi05G005410 vs. TAIR 10
Match: AT5G52040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 313.9 bits (803), Expect = 4.0e-85
Identity = 195/326 (59.82%), Postives = 223/326 (68.40%), Query Frame = 0


Query: 42  DWFPGFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGGGGGGGG 101
           D   GFAF+YMEDER+AEDAIRALDR E+GR GRRLRVEWTK +R       GG G  GG
Sbjct: 32  DMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDR-------GGAGRSGG 91

Query: 102 TRRSSTNTRPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDAT 161
           +RRSS+  RPSKTLFVINFD  +TRTRDLERHF+PYGKI+NVRIRRNFAF+QYE QEDAT
Sbjct: 92  SRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDAT 151

Query: 162 RALELTNMSKLMDRVISVEYAVRDDDEKRNGYSPDRNRDRSPDRKRRSPSPYRRERGSPD 221
           RAL+ TN SKLMD+VISVEYAV+DDD + NGYSP+R RDRSPDR+RRSPSPYRRERGSPD
Sbjct: 152 RALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRRRRSPSPYRRERGSPD 211

Query: 222 YGNGISRSPYRRQRGSPDYG-SRRSPSPYQRERERGSPDY---GRGRSPKHSPYR-RERE 281
           YG G S   ++R+R SPDYG  RRSPSPY+R R   SPDY    R R    SP     R 
Sbjct: 212 YGRGASPVAHKRERTSPDYGRGRRSPSPYKRARL--SPDYKRDDRRRERVASPENGAVRN 271

Query: 282 RSSDHARAPSHSPPHQRERPNDDRIPNRSRSPYGRERERGSPTDGRDTSYSPRDRERSNP 341
           RS    R  S SPP     P + R  +RS  PY + RE  SP          R R +S+P
Sbjct: 272 RSPRKGRGESRSPP-----PYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSP 331

Query: 342 DNGHDQRQNAVAEPGESPSYGGTQSP 363
           +NG  +    + E      Y G  SP
Sbjct: 332 ENGQVESPGQIMEVEAGRGYDGADSP 343

The following BLAST results are available for this feature:

BLAST of Lsi05G005410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92965	1.3e-93	48.82	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92966	5.6e-84	59.82	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92964	1.7e-56	39.61	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3...	[more]
Q9ZPX8	4.5e-49	35.92	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
Q0VCY7	2.2e-11	35.53	Serine/arginine-rich splicing factor 1 OS=Bos taurus OX=9913 GN=SRSF1 PE=2 SV=1	[more]

BLAST of Lsi05G005410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXA1	5.3e-170	72.54	serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo OX=365...	[more]
A0A5A7VJB8	5.3e-170	72.54	Serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo var. m...	[more]
A0A5D3BC56	5.3e-170	87.40	Serine/arginine-rich splicing factor RS40-like isoform X1 OS=Cucumis melo var. m...	[more]
A0A0A0L2A0	3.5e-169	72.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063650 PE=4 SV=1	[more]
A0A0A0L7I3	1.0e-165	71.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063660 PE=4 SV=1	[more]

BLAST of Lsi05G005410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577485.1	3.3e-283	68.56	Serine/arginine-rich splicing factor RS40, partial [Cucurbita argyrosperma subsp...	[more]
XP_038904888.1	1.5e-179	75.59	serine/arginine-rich splicing factor RS40-like isoform X1 [Benincasa hispida]	[more]
TYJ96554.1	1.1e-169	87.40	serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo var. mak...	[more]
XP_008449100.1	1.1e-169	72.54	PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis me...	[more]
XP_004149583.1	7.1e-169	72.12	serine/arginine-rich splicing factor RS40 isoform X1 [Cucumis sativus] >KGN56065...	[more]

BLAST of Lsi05G005410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25500.1	9.5e-95	48.82	arginine/serine-rich splicing factor 35	[more]
AT4G25500.4	9.5e-95	48.82	arginine/serine-rich splicing factor 35	[more]
AT4G25500.3	3.2e-90	61.92	arginine/serine-rich splicing factor 35	[more]
AT4G25500.2	8.1e-86	61.39	arginine/serine-rich splicing factor 35	[more]
AT5G52040.1	4.0e-85	59.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 617..683 e-value: 1.5E-16 score: 71.0 coord: 114..180 e-value: 2.4E-16 score: 70.3 coord: 408..583 e-value: 7.5E-4 score: 28.8 coord: 19..80 e-value: 3.0 score: 2.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 545..575 e-value: 1.4E-4 score: 21.6 coord: 618..680 e-value: 1.0E-11 score: 44.5 coord: 115..177 e-value: 1.4E-11 score: 44.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 616..687 score: 15.101589
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 46..84 score: 9.251588
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 113..184 score: 15.1357
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 407..587 score: 9.473308
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 406..610 e-value: 2.6E-16 score: 61.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 42..105 e-value: 6.4E-10 score: 41.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 106..195 e-value: 3.2E-19 score: 70.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 611..696 e-value: 2.4E-19 score: 71.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 689..874
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 590..613
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 749..810
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 689..718
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 840..862
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..368
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..339
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 44..222
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 409..439
None	No IPR available	PANTHER	PTHR23147:SF159	BNAC08G47240D PROTEIN	coord: 44..222 coord: 409..439
None	No IPR available	PANTHER	PTHR23147:SF159	BNAC08G47240D PROTEIN	coord: 547..725
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 547..725
None	No IPR available	CDD	cd12466	RRM2_AtRSp31_like	coord: 617..686 e-value: 2.25119E-37 score: 132.287
None	No IPR available	CDD	cd12466	RRM2_AtRSp31_like	coord: 114..183 e-value: 4.98635E-38 score: 134.213
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 546..691
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 44..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005410.1	Lsi05G005410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding