Lsi05G005340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pectin lyase-like superfamily protein
Location	chr05: 6667272 .. 6667697 (-)
RNA-Seq Expression	Lsi05G005340
Synteny	Lsi05G005340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGGTGTAGTTTTAATACCAGCACGAGGAAGGTTCTTGGTTTTGTCATCGATACTTCAAGGTCCATGCCATGATGTCTATCCTGTTGTTGTTGCCACTACTACCGCCGTCCACGCATGTTGGAATCCACATTTCATCGTCGAGTGGTACCAACATCATGCATTTAGTTATCAGTACTGCAGATAATTGCATCTCCTTGAACCCTGAAAGCAAATTTATCAATATAACCAGCGTCCAATGCGGTTTTGGCTACAGAATTAGTATCGGTAGCCTCAGAAAGTATCCAAACGAAGAAGACGTCTTTGAAGTCACAACAAGATACTCTACATTTGTTGGCACGTCCAATATAGTGAGAATCAAATCGTGGTCATCTTTGTATTCCAGTATTGTTAGCAAGGCCGCATATCTCAATCTCCAATGA

mRNA sequence

ATGGAGGTCCATGCCATGATGTCTATCCTGTTGTTGTTGCCACTACTACCGCCGTCCACGCATGTTGGAATCCACATTTCATCGTCGAGTGGTACCAACATCATGCATTTAGTTATCAGTACTGCAGATAATTGCATCTCCTTGAACCCTGAAAGCAAATTTATCAATATAACCAGCGTCCAATGCGGTTTTGGCTACAGAATTAGTATCGGTAGCCTCAGAAAGTATCCAAACGAAGAAGACGTCTTTGAAGTCACAACAAGATACTCTACATTTGTTGGCACGTCCAATATAGTGAGAATCAAATCGTGGTCATCTTTGTATTCCAGTATTGTTAGCAAGGCCGCATATCTCAATCTCCAATGA

Coding sequence (CDS)

ATGGAGGTCCATGCCATGATGTCTATCCTGTTGTTGTTGCCACTACTACCGCCGTCCACGCATGTTGGAATCCACATTTCATCGTCGAGTGGTACCAACATCATGCATTTAGTTATCAGTACTGCAGATAATTGCATCTCCTTGAACCCTGAAAGCAAATTTATCAATATAACCAGCGTCCAATGCGGTTTTGGCTACAGAATTAGTATCGGTAGCCTCAGAAAGTATCCAAACGAAGAAGACGTCTTTGAAGTCACAACAAGATACTCTACATTTGTTGGCACGTCCAATATAGTGAGAATCAAATCGTGGTCATCTTTGTATTCCAGTATTGTTAGCAAGGCCGCATATCTCAATCTCCAATGA

Protein sequence

MEVHAMMSILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ

Homology

[Close]

BLAST of Lsi05G005340 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-16
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 23  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDV 82
           GIHI  S G NI++  I T D+CISL   SK INIT++ CG G+ IS+GSL +Y NEE V
Sbjct: 159 GIHIGRSDGVNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESV 218

Query: 83  FEVTTRYSTFVGTSNIVRIKSW 105
             +  +  T  G+ N VRIK+W
Sbjct: 219 VGIYVKNCTITGSQNGVRIKTW 240

[Close]

BLAST of Lsi05G005340 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 23  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDV 82
           GIH+  S G  I +  I+T D+CIS+ P S+ + IT V CG G+ ISIGSL +Y NE++V
Sbjct: 180 GIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEV 239

Query: 83  FEVTTRYSTFVGTSNIVRIKSW 105
             +T +  TF GT N VR+K+W
Sbjct: 240 RGITVKGCTFSGTMNGVRVKTW 261

[Close]

BLAST of Lsi05G005340 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 23  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDV 82
           GIH+  SSG  I + VI   D+CIS+ P +  +NIT V CG G+ ISIGSL +Y +E+DV
Sbjct: 213 GIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 272

Query: 83  FEVTTRYSTFVGTSNIVRIKSWSSLYSSI-VSKAAYLNLQ 122
            ++  +  T   T+N VRIK++    S +  SK  Y N++
Sbjct: 273 TDINVKDCTLKKTANGVRIKAYEDAASVLTASKIHYENIK 312

[Close]

BLAST of Lsi05G005340 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 14  PLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSL 73
           P   P+T  GIH+S SS  NI     ST D+CIS+  E++ + IT V CG G+ IS+GSL
Sbjct: 185 PANSPNTD-GIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSL 244

Query: 74  RKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVS 114
              P+E+ V  V  R  TF  T N VRIK+W + +  +V+
Sbjct: 245 GGNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVN 283

[Close]

BLAST of Lsi05G005340 vs. ExPASy Swiss-Prot
Match: P26216 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 23  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDV 82
           GIH+  SSG  I + VI   D+CIS+ P +  +NIT V CG G+ ISIGSL +Y +E+DV
Sbjct: 213 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 272

Query: 83  FEVTTRYSTFVGTSNIVRIKSWSSLYSSI-VSKAAYLNLQ 122
            ++  +  T   T   VRIK++    S + VSK  Y N++
Sbjct: 273 TDINVKDCTLKKTMFGVRIKAYEDAASVLTVSKIHYENIK 312

[Close]

BLAST of Lsi05G005340 vs. ExPASy TrEMBL
Match: A0A0A0L7H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063610 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.4e-33
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIHISSSSG NIMH  I T D+CISL P SKFINIT++QCG G+ I
Sbjct: 150 VTVIAPANSPNTD-GIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITNIQCGPGHGI 209

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDVFEVT R STF+GTSN VRIK+WSS YSS+VSK  +LNLQ
Sbjct: 210 SIGSLGKYPNEEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVSKVTFLNLQ 261

[Close]

BLAST of Lsi05G005340 vs. ExPASy TrEMBL
Match: A0A1S4DX91 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491147 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIH+S SSG NIMH  I T D+CISL P SKFINIT+VQCG G+ I
Sbjct: 148 VTVIAPANSPNTD-GIHVSLSSGINIMHSTIGTGDDCISLGPGSKFINITNVQCGPGHGI 207

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDVFEVT R STF+GT+N  RIK+WSS YS++VSK  +LNLQ
Sbjct: 208 SIGSLGKYPNEEDVFEVTVRDSTFLGTTNGARIKTWSSSYSNMVSKVTFLNLQ 259

[Close]

BLAST of Lsi05G005340 vs. ExPASy TrEMBL
Match: A0A5D3B9J1 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001860 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIH+S SSG NIMH  I T D+CISL P SKFINIT+VQCG G+ I
Sbjct: 148 VTVIAPANSPNTD-GIHVSLSSGINIMHSTIGTGDDCISLGPGSKFINITNVQCGPGHGI 207

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDVFEVT R STF+GT+N  RIK+WSS YS++VSK  +LNLQ
Sbjct: 208 SIGSLGKYPNEEDVFEVTVRDSTFLGTTNGARIKTWSSSYSNMVSKITFLNLQ 259

[Close]

BLAST of Lsi05G005340 vs. ExPASy TrEMBL
Match: A0A6J1EW42 (exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111438611 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T   IH+S+SSG NIMH VI T D+CISL P SKFIN+T VQCG G+ I
Sbjct: 229 VTVIAPADSPNTD-AIHVSNSSGVNIMHSVIGTGDDCISLGPGSKFINMTDVQCGPGHGI 288

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDV EVT R STFVGT+N VRIK+WSS +SS+VSK A++NLQ
Sbjct: 289 SIGSLGKYPNEEDVSEVTVRNSTFVGTTNGVRIKTWSSSFSSVVSKIAFINLQ 340

[Close]

BLAST of Lsi05G005340 vs. ExPASy TrEMBL
Match: A0A6J1F153 (exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111438612 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIH+S SSG NIMH VI T D+CISL P SKFINIT +QCG G+ I
Sbjct: 174 VTVIAPADSPNTD-GIHVSKSSGINIMHSVIRTGDDCISLGPGSKFINITDIQCGPGHGI 233

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDV EVT R STFVGT N VRIK+WSS +SS VSK A+LNL+
Sbjct: 234 SIGSLGKYPNEEDVSEVTIRDSTFVGTDNGVRIKTWSSSFSSFVSKIAFLNLE 285

[Close]

BLAST of Lsi05G005340 vs. NCBI nr
Match: XP_038904214.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 8.7e-33
Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIHISSSSG NIMH VIST D+CISL P SKFINIT++QCG G+ I
Sbjct: 183 VTVIAPTDSPNTD-GIHISSSSGINIMHSVISTGDDCISLGPGSKFINITNIQCGPGHGI 242

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDVFEVT R S F+GTSN VRIKSWSS YSS+VSK +Y NLQ
Sbjct: 243 SIGSLGKYPNEEDVFEVTIRDSIFIGTSNGVRIKSWSSSYSSLVSKVSYRNLQ 294

[Close]

BLAST of Lsi05G005340 vs. NCBI nr
Match: XP_038904215.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 80/113 (70.80%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIHISSSSG NIMH VI T D+CISL P SKFINIT+VQCG G+ I
Sbjct: 144 VTVVAPADSPNTD-GIHISSSSGINIMHSVIGTGDDCISLGPGSKFINITNVQCGPGHGI 203

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDVFEVT R STF+GTSN VRIKSWSS YSS+VS   +LNLQ
Sbjct: 204 SIGSLGKYPNEEDVFEVTIRDSTFIGTSNGVRIKSWSSSYSSMVSNVTFLNLQ 255

[Close]

BLAST of Lsi05G005340 vs. NCBI nr
Match: XP_031738767.1 (exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIHISSSSG NIMH  I T D+CISL P SKFINIT++QCG G+ I
Sbjct: 150 VTVIAPANSPNTD-GIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITNIQCGPGHGI 209

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDVFEVT R STF+GTSN VRIK+WSS YSS+VSK  +LNLQ
Sbjct: 210 SIGSLGKYPNEEDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVSKVTFLNLQ 261

[Close]

BLAST of Lsi05G005340 vs. NCBI nr
Match: XP_038904218.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 4.3e-32
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIHISSSSG NIMH +I T D+CISL P SKFINIT+V+CG G+ I
Sbjct: 195 VTMIAPANSPNTD-GIHISSSSGINIMHSMIGTGDDCISLGPGSKFINITNVRCGPGHGI 254

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEED+FEVT R STF+GTSN VRIKSW S YSS+VSK  Y+NLQ
Sbjct: 255 SIGSLGKYPNEEDIFEVTVRDSTFIGTSNGVRIKSWLSSYSSMVSKVTYMNLQ 306

[Close]

BLAST of Lsi05G005340 vs. NCBI nr
Match: XP_016900599.1 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 9   ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRI 68
           + ++ P   P+T  GIH+S SSG NIMH  I T D+CISL P SKFINIT+VQCG G+ I
Sbjct: 148 VTVIAPANSPNTD-GIHVSLSSGINIMHSTIGTGDDCISLGPGSKFINITNVQCGPGHGI 207

Query: 69  SIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNLQ 122
           SIGSL KYPNEEDVFEVT R STF+GT+N  RIK+WSS YS++VSK  +LNLQ
Sbjct: 208 SIGSLGKYPNEEDVFEVTVRDSTFLGTTNGARIKTWSSSYSNMVSKVTFLNLQ 259

[Close]

BLAST of Lsi05G005340 vs. TAIR 10
Match: AT2G43880.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-15
Identity = 49/113 (43.36%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 8   SILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYR 67
           ++ +  P   P+T  GIH+ SSSG  I    I+T D+CI+L+  S+ I I  V CG G+ 
Sbjct: 186 NVRIRAPSGSPNTD-GIHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHG 245

Query: 68  ISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAYLNL 121
           ISIGSL  Y NEE V  VT   S F  T N VRIK+W+      V+   + NL
Sbjct: 246 ISIGSLGDYANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNL 297

[Close]

BLAST of Lsi05G005340 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-15
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 23  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDV 82
           GIH+ SSS  +I +  IST D+C+S+ P +  + I +V CG G+ ISIGSL K   E  V
Sbjct: 192 GIHVQSSSSVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVESGV 251

Query: 83  FEVTTRYSTFVGTSNIVRIKSWS 106
             VT +  TF GT N VRIKSW+
Sbjct: 252 QNVTVKTVTFTGTDNGVRIKSWA 274

[Close]

BLAST of Lsi05G005340 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-15
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 23  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDV 82
           GIH+ SSS  +I++  IST D+C+S+ P +  + I +V CG G+ ISIGSL K   E  V
Sbjct: 194 GIHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKESVEVGV 253

Query: 83  FEVTTRYSTFVGTSNIVRIKSWS 106
             +T + +TF GT N VRIKSW+
Sbjct: 254 QNITVKTATFTGTENGVRIKSWA 276

[Close]

BLAST of Lsi05G005340 vs. TAIR 10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 23  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDV 82
           GIHI  S+G N++   I T D+C+S+   ++ + + +V+CG G+ ISIGSL +YPNE+ V
Sbjct: 242 GIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPV 301

Query: 83  FEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAY 118
             VT R      T N VRIK+W      I S   +
Sbjct: 302 KGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILF 336

[Close]

BLAST of Lsi05G005340 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-14
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 23  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDV 82
           GIHI  S+G N++   I T D+C+S+   ++ + + +V+CG G+ ISIGSL +YPNE+ V
Sbjct: 241 GIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPV 300

Query: 83  FEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAY 118
             VT R      T N VRIK+W      I S   +
Sbjct: 301 KGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILF 335

The following BLAST results are available for this feature:

BLAST of Lsi05G005340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24548	3.5e-16	51.22	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q6H9K0	1.3e-15	48.78	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
P35339	2.5e-14	43.00	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1	[more]
Q05967	1.2e-13	44.00	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
P26216	2.1e-13	43.00	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1	[more]

BLAST of Lsi05G005340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7H9	9.4e-33	69.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063610 PE=3 SV=1	[more]
A0A1S4DX91	1.1e-30	65.49	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491147 PE=3 SV=1	[more]
A0A5D3B9J1	1.5e-30	65.49	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1EW42	1.5e-30	65.49	exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111438611 PE=3 SV=...	[more]
A0A6J1F153	2.6e-30	66.37	exopolygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111438612 PE=3 SV=...	[more]

BLAST of Lsi05G005340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904214.1	8.7e-33	70.80	exopolygalacturonase-like [Benincasa hispida]	[more]
XP_038904215.1	1.9e-32	70.80	exopolygalacturonase-like [Benincasa hispida]	[more]
XP_031738767.1	1.9e-32	69.03	exopolygalacturonase [Cucumis sativus]	[more]
XP_038904218.1	4.3e-32	68.14	exopolygalacturonase-like [Benincasa hispida]	[more]
XP_016900599.1	2.4e-30	65.49	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]

BLAST of Lsi05G005340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43880.1	3.0e-15	43.36	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	6.7e-15	49.40	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	6.7e-15	48.19	Pectin lyase-like superfamily protein	[more]
AT3G14040.1	2.5e-14	41.05	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	2.5e-14	41.05	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 23..120 e-value: 1.1E-20 score: 73.9
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 16..121 e-value: 8.4E-20 score: 73.0
None	No IPR available	PANTHER	PTHR31375:SF124	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 23..119
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 23..119
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 23..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005340.1	Lsi05G005340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity