Lsi05G005120 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	outer envelope protein 80, chloroplastic-like
Location	chr05: 6414022 .. 6415837 (+)
RNA-Seq Expression	Lsi05G005120
Synteny	Lsi05G005120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTCTCTAAACCAAAGGAGTATTTCTCTTCGCCTTCTCTCGTGTCTGTCTAGATTTACAGATCTCTAGTGTAGAGGGTGATGAAAGAAGGAGAATAATCCATTTTTCCAAACAACCCATGTACCCTAATTCTTCTCTTCAAAATCCTAATCATCAAAATGCTGTTGGACACCATCGCAATGCACATTGGTCCTCCCCTCTCTGCCCCCGCCGTCCACCCGGTTGACGCCCACTACTGGATCACTACGTCCGCCCAAATTCTCGTTAGTTCCACTCAGTTCTCTTACTTCGTCTGCACTAAAACCTTCAACAGATACAACATGCAGGTTCTTCCTTTCCTATATCAAATTACTCACAAACTTATACATATTTTTAAAATCTCAGTTCATTTGCACATGGACAGATTCTTTTGGGTCTTTTTTTCCTACCATTTAAAACAGATGGTGGAAAAGAACCTAGTTTTCCAAATTGAAATCTAATTGTTTTTTTAAGAACAAAACTGAGTTTATATTGAGAGCAAAAAGACATGAAAATGGAAAATTGGAGGTACAAAATGGGTCATTAGACGTTGAATTTGGTTGATTGAAACAATGAAAACATATGCACATGTGGGGTCATGGATTAAAATACAGAAAAGGGCCACGAGAAGACGACAACTCGAAGTTCCCGATGGAGTAAAACGACTGATCTGTCTCCTTCTCTTGCTAATTTTCTAGTGAGTAGAGATTTACATTATGTTCATAAATTTAGATAATAAGTTTGTAAAGTTTAGGATTTTTAATTGTTTTGAGTGTAAGGGAGAGGTAGGTACTTGTGAAGCTATTTATATTAACTTTCTCTTGAGTGTTAAAATTTAGGTTTGATATTGTATTTAAAAGTTGTTGAGTTTAGTTTTGTGGTTTCGGTAAAAGGATTGAACAAAAACATAAAAGAATATGGTATCTCTATCTTCACTCTGTTTCTCCAATCCATACATGCCAAAACTTAACAGCCACATGAAGGACACAAAGAAGGAAATGAAGCCAACAGTGCAAAGAAAGTATGTCTAGAGACTAAGGTGAACTTACGAAATGGTATAGATTGTTGTGATTGTTAAGTCATTCTAAATACATGTATTACATCATACAGGCCTTGATGTTGATGAATAATTAGTTCTTGAACTTCCTACAATTGTACATGCATGTGAGAGTATGATTGAAATGCTTAGAGGCCAGTATGCTCGCATTGTGCCAATTGTTACCATGAAGCAACCTTCCATTATATTGATGTCGCAAAGGTGTTATACTTTTTGGCAATTTTATTTTCCATGATCTTAATACTACTCAAAAAGTCATACGCATTGAATTTTGACCATGATAACTTGTACTCATTGTATGTGTCTTTTGGATGCTTGGTAGAAAAAAGTGATCTTAGTATTTTGAAAGTGAGGTGCATTTTTTTGTTTATATAATTAGGTCTTCAGTGTTTCTAAATATTGGAAGGATGCCTTCGCCGTAAGGGTGATTGTATCTCCATTGAGGCCATTACTAAAGAATAAGCATCAAGTGTATAAATGTATTATTGGTACTATTATATGAATATGTTAGCAGGTTGTTTTGTCTTATATGTTGTTGATGTTTATTTGGGCTACTAGAGGTCTAACTTTTTTGTAGCCTTTTATTTGGTTTGTTATTGATTTTTTTTTAGTTGGCAAATTCTGCCCACATTGAAGCAACTGTCATTGGGGGAACAAACAGTGTAAGAGGATACAAAGAAGGTGTTATAGGCTCTGGTCAATCTTATGTTGTTGGATGTGGAGAGATCTCTTTTCCCTTG

mRNA sequence

CTTCTCTCTAAACCAAAGGAGTATTTCTCTTCGCCTTCTCTCGTGTCTGTCTAGATTTACAGATCTCTAGTGTAGAGGGTGATGAAAGAAGGAGAATAATCCATTTTTCCAAACAACCCATGTACCCTAATTCTTCTCTTCAAAATCCTAATCATCAAAATGCTGTTGGACACCATCGCAATGCACATTGGTCCTCCCCTCTCTGCCCCCGCCGTCCACCCGGTTGACGCCCACTACTGGATCACTACGTCCGCCCAAATTCTCGTTAGTTCCACTCAGTTCTCTTACTTCGTCTGCACTAAAACCTTCAACAGATACAACATGCAGGTCTTCAGTGTTTCTAAATATTGGAAGGATGCCTTCGCCTTGGCAAATTCTGCCCACATTGAAGCAACTGTCATTGGGGGAACAAACAGTGTAAGAGGATACAAAGAAGGTGTTATAGGCTCTGGTCAATCTTATGTTGTTGGATGTGGAGAGATCTCTTTTCCCTTG

Coding sequence (CDS)

ATGCTGTTGGACACCATCGCAATGCACATTGGTCCTCCCCTCTCTGCCCCCGCCGTCCACCCGGTTGACGCCCACTACTGGATCACTACGTCCGCCCAAATTCTCGTTAGTTCCACTCAGTTCTCTTACTTCGTCTGCACTAAAACCTTCAACAGATACAACATGCAGGTCTTCAGTGTTTCTAAATATTGGAAGGATGCCTTCGCCTTGGCAAATTCTGCCCACATTGAAGCAACTGTCATTGGGGGAACAAACAGTGTAAGAGGATACAAAGAAGGTGTTATAGGCTCTGGTCAATCTTATGTTGTTGGATGTGGAGAGATCTCTTTTCCCTTG

Protein sequence

MLLDTIAMHIGPPLSAPAVHPVDAHYWITTSAQILVSSTQFSYFVCTKTFNRYNMQVFSVSKYWKDAFALANSAHIEATVIGGTNSVRGYKEGVIGSGQSYVVGCGEISFPL

Homology

[Close]

BLAST of Lsi05G005120 vs. ExPASy Swiss-Prot
Match: Q9C5J8 (Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP80 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-09
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 77  EATVIGGTNSVRGYKEGVIGSGQSYVVGCGEISFPL 113
           EA VIGGTNSVRGY+EG +GSG+SYVVG GE+SFP+
Sbjct: 623 EAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELSFPV 658

[Close]

BLAST of Lsi05G005120 vs. ExPASy Swiss-Prot
Match: A2X208 (Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OEP80 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 77  EATVIGGTNSVRGYKEGVIGSGQSYVVGCGEIS 110
           EA  IGGTNSVRGY+EG +GSG+SY VG GE+S
Sbjct: 556 EAFAIGGTNSVRGYEEGAVGSGRSYAVGSGEVS 588

[Close]

BLAST of Lsi05G005120 vs. ExPASy Swiss-Prot
Match: Q6H7M7 (Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=OEP80 PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 77  EATVIGGTNSVRGYKEGVIGSGQSYVVGCGEIS 110
           EA  IGGTNSVRGY+EG +GSG+SY VG GE+S
Sbjct: 556 EAFAIGGTNSVRGYEEGAVGSGRSYAVGSGEVS 588

[Close]

BLAST of Lsi05G005120 vs. ExPASy Swiss-Prot
Match: Q9FX68 (Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = 0


Query: 5   TIAMHIGPPLS----------APAVHPVDAHYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           T+A+HIGPP S             +      YWI + +QILV  TQFS  VC KTFNR+N
Sbjct: 55  TVALHIGPPSSDKETLSGGNNQEGLTARQGQYWIPSLSQILVGPTQFSCSVCNKTFNRFN 114

[Close]

BLAST of Lsi05G005120 vs. ExPASy TrEMBL
Match: A0A6J1DR05 (zinc finger protein WIP6 OS=Momordica charantia OX=3673 GN=LOC111022346 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.7e-09
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 5   TIAMHIGPPLSAP------AVHPVDAHYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           T+AMHIGPPL+A       A  PVD  YWI T AQILV  TQFS  VC+KTFNRYN
Sbjct: 61  TVAMHIGPPLAAAADSTDGAARPVDGQYWIPTPAQILVGPTQFSCTVCSKTFNRYN 116

[Close]

BLAST of Lsi05G005120 vs. ExPASy TrEMBL
Match: A0A6J1I950 (zinc finger protein WIP6-like OS=Cucurbita maxima OX=3661 GN=LOC111472204 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 35/58 (60.34%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 5   TIAMHIGPPLSA--------PAVHPVDAHYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           T+AMHIGPP +A         A  PVD  YWI T AQILV  TQFS  VC+KTFNRYN
Sbjct: 78  TVAMHIGPPATAAATESNDVSAARPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYN 135

[Close]

BLAST of Lsi05G005120 vs. ExPASy TrEMBL
Match: A0A2P6QLX7 (Putative bacterial surface antigen (D15) OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0077091 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 57  VFSVSKYWKDAFALANSAHIEATVIGGTNSVRGYKEGVIGSGQSYVVGCGEISFPL 113
           +FSVS        + N    EA VIGGTNSVRGY+EG +GSG+SY VGCGEISFPL
Sbjct: 561 LFSVS----GGHVVGNFPPHEAFVIGGTNSVRGYEEGAVGSGRSYAVGCGEISFPL 612

[Close]

BLAST of Lsi05G005120 vs. ExPASy TrEMBL
Match: A0A5B7AVS1 (POTRA domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_029616 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 70  LANSAHIEATVIGGTNSVRGYKEGVIGSGQSYVVGCGEISFPL 113
           + N +  EA  IGGTNSVRGY+EG +GSG+SYVVGCGEISFPL
Sbjct: 315 VGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGCGEISFPL 357

[Close]

BLAST of Lsi05G005120 vs. ExPASy TrEMBL
Match: A0A5B7AWA5 (POTRA domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_029617 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 70  LANSAHIEATVIGGTNSVRGYKEGVIGSGQSYVVGCGEISFPL 113
           + N +  EA  IGGTNSVRGY+EG +GSG+SYVVGCGEISFPL
Sbjct: 573 VGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGCGEISFPL 615

[Close]

BLAST of Lsi05G005120 vs. NCBI nr
Match: XP_038875923.1 (zinc finger protein WIP6-like [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-09
Identity = 39/56 (69.64%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 5   TIAMHIGPP-----LSAPAVHPVD-AHYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           T+AMHIGPP      S PAV P+D AHYWI T AQILV  TQFS  VCTKTFNRYN
Sbjct: 63  TVAMHIGPPPALSSSSTPAVRPLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYN 118

[Close]

BLAST of Lsi05G005120 vs. NCBI nr
Match: XP_022155206.1 (zinc finger protein WIP6 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 5   TIAMHIGPPLSAP------AVHPVDAHYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           T+AMHIGPPL+A       A  PVD  YWI T AQILV  TQFS  VC+KTFNRYN
Sbjct: 61  TVAMHIGPPLAAAADSTDGAARPVDGQYWIPTPAQILVGPTQFSCTVCSKTFNRYN 116

[Close]

BLAST of Lsi05G005120 vs. NCBI nr
Match: XP_024159864.1 (outer envelope protein 80, chloroplastic [Rosa chinensis] >PRQ35169.1 putative bacterial surface antigen (D15) [Rosa chinensis])

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-08
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 57  VFSVSKYWKDAFALANSAHIEATVIGGTNSVRGYKEGVIGSGQSYVVGCGEISFPL 113
           +FSVS        + N    EA VIGGTNSVRGY+EG +GSG+SY VGCGEISFPL
Sbjct: 561 LFSVS----GGHVVGNFPPHEAFVIGGTNSVRGYEEGAVGSGRSYAVGCGEISFPL 612

[Close]

BLAST of Lsi05G005120 vs. NCBI nr
Match: XP_023546764.1 (zinc finger protein WIP6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546773.1 zinc finger protein WIP6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-08
Identity = 35/58 (60.34%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 5   TIAMHIGPPLSA--------PAVHPVDAHYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           T+AMHIGPP +A         A  PVD  YWI T AQILV  TQFS  VC+KTFNRYN
Sbjct: 81  TVAMHIGPPATAAATESNDVSAARPVDGQYWIPTPAQILVGPTQFSCSVCSKTFNRYN 138

[Close]

BLAST of Lsi05G005120 vs. NCBI nr
Match: KAA8528103.1 (hypothetical protein F0562_035028 [Nyssa sinensis])

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-08
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 70  LANSAHIEATVIGGTNSVRGYKEGVIGSGQSYVVGCGEISFPL 113
           + N +  EA  IGGTNSVRGY+EG +GSG+SYVVGCGEISFPL
Sbjct: 569 VGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGCGEISFPL 611

[Close]

BLAST of Lsi05G005120 vs. TAIR 10
Match: AT5G19620.1 (outer envelope protein of 80 kDa )

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-10
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 77  EATVIGGTNSVRGYKEGVIGSGQSYVVGCGEISFPL 113
           EA VIGGTNSVRGY+EG +GSG+SYVVG GE+SFP+
Sbjct: 623 EAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELSFPV 658

[Close]

BLAST of Lsi05G005120 vs. TAIR 10
Match: AT1G13290.1 (C2H2-like zinc finger protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-06
Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = 0


Query: 5   TIAMHIGPPLS----------APAVHPVDAHYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           T+A+HIGPP S             +      YWI + +QILV  TQFS  VC KTFNR+N
Sbjct: 55  TVALHIGPPSSDKETLSGGNNQEGLTARQGQYWIPSLSQILVGPTQFSCSVCNKTFNRFN 114

[Close]

BLAST of Lsi05G005120 vs. TAIR 10
Match: AT1G51220.1 (WIP domain protein 5 )

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-05
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 25  HYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           HYWI T +QIL+  TQF+  +C KTFNRYN
Sbjct: 162 HYWIPTPSQILIGPTQFTCPLCFKTFNRYN 191

[Close]

BLAST of Lsi05G005120 vs. TAIR 10
Match: AT3G57670.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 20/29 (68.97%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 26  YWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           YWI T +QIL+  TQFS  VC KTFNRYN
Sbjct: 202 YWIPTPSQILIGPTQFSCPVCFKTFNRYN 230

[Close]

BLAST of Lsi05G005120 vs. TAIR 10
Match: AT3G20880.1 (WIP domain protein 4 )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 25  HYWITTSAQILVSSTQFSYFVCTKTFNRYN 55
           H+WI T +QIL+  TQFS  +C KTFNRYN
Sbjct: 240 HFWIPTPSQILMGPTQFSCPLCFKTFNRYN 269

The following BLAST results are available for this feature:

BLAST of Lsi05G005120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5J8	2.9e-09	77.78	Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP8...	[more]
A2X208	1.0e-06	72.73	Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica OX=39946 ...	[more]
Q6H7M7	1.0e-06	72.73	Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9FX68	3.3e-05	45.00	Zinc finger protein WIP6 OS=Arabidopsis thaliana OX=3702 GN=WIP6 PE=2 SV=1	[more]

BLAST of Lsi05G005120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DR05	6.7e-09	64.29	zinc finger protein WIP6 OS=Momordica charantia OX=3673 GN=LOC111022346 PE=3 SV=...	[more]
A0A6J1I950	4.3e-08	60.34	zinc finger protein WIP6-like OS=Cucurbita maxima OX=3661 GN=LOC111472204 PE=3 S...	[more]
A0A2P6QLX7	4.3e-08	62.50	Putative bacterial surface antigen (D15) OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]
A0A5B7AVS1	4.3e-08	72.09	POTRA domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_029616 PE...	[more]
A0A5B7AWA5	4.3e-08	72.09	POTRA domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_029617 PE...	[more]

BLAST of Lsi05G005120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875923.1	2.1e-09	69.64	zinc finger protein WIP6-like [Benincasa hispida]	[more]
XP_022155206.1	1.4e-08	64.29	zinc finger protein WIP6 [Momordica charantia]	[more]
XP_024159864.1	9.0e-08	62.50	outer envelope protein 80, chloroplastic [Rosa chinensis] >PRQ35169.1 putative b...	[more]
XP_023546764.1	9.0e-08	60.34	zinc finger protein WIP6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546...	[more]
KAA8528103.1	9.0e-08	72.09	hypothetical protein F0562_035028 [Nyssa sinensis]	[more]

BLAST of Lsi05G005120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19620.1	2.1e-10	77.78	outer envelope protein of 80 kDa	[more]
AT1G13290.1	2.4e-06	45.00	C2H2-like zinc finger protein	[more]
AT1G51220.1	7.6e-05	63.33	WIP domain protein 5	[more]
AT3G57670.1	1.3e-04	68.97	C2H2-type zinc finger family protein	[more]
AT3G20880.1	1.7e-04	63.33	WIP domain protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000184	Bacterial surface antigen (D15)	PFAM	PF01103	Omp85	coord: 73..112 e-value: 1.8E-4 score: 21.1
None	No IPR available	PANTHER	PTHR12815:SF32	OUTER ENVELOPE PROTEIN 80, CHLOROPLASTIC	coord: 72..112
IPR039910	Surface antigen D15-like	PANTHER	PTHR12815	SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER	coord: 72..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005120.1	Lsi05G005120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0045040	protein insertion into mitochondrial outer membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009527	plastid outer membrane
cellular_component	GO:0001401	SAM complex
cellular_component	GO:0019867	outer membrane