Lsi05G005110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	nuclear transcription factor Y subunit B-9
Location	chr05: 6412401 .. 6413030 (+)
RNA-Seq Expression	Lsi05G005110
Synteny	Lsi05G005110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCTGATCCCAAACAAGCCAACCTCCGGCAACAACACACCGAACAGCAATCACCACCTCTCTAACGGTGGAGCCGCCACCGGCAACTCCCCAGCTACCAGCCCAGTCCCGATCACTGCCGCTGCCAACAATGAACAAAACCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGTATCATGCGACGGATCTTACCCTCCCATGCAAAGATATCTGACGATGCCAAAGAGACCATCCAAGAATGTGTATCGGAGTATATCAGCTTCATCACTGGCGAAGCGAACGAGCGATGCCAACGAGAGCAGCGCAAGACGGTGACGGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGATGACTACATCGAACCGCTAACTGTTTTTCTCAACCGTTATCGTGAATTGGAGAGTGACCGAATTCGCACTGAGCCAATCTTGAGGCGCAATGTAGATTACGGGCCACAAGTGGGGATGATGCCACCGTATGGGCAGGCGTTTCAGATAGGACACGTCCCGGCAGGGATGTTCGATGCAATGGGCGGATACTATGGTGGAGGTGGGAGCGGCGGGCCGAGCGCGGGGAACGGTAGCCAGCTTTGA

mRNA sequence

ATGTTGCTGATCCCAAACAAGCCAACCTCCGGCAACAACACACCGAACAGCAATCACCACCTCTCTAACGGTGGAGCCGCCACCGGCAACTCCCCAGCTACCAGCCCAGTCCCGATCACTGCCGCTGCCAACAATGAACAAAACCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGTATCATGCGACGGATCTTACCCTCCCATGCAAAGATATCTGACGATGCCAAAGAGACCATCCAAGAATGTGTATCGGAGTATATCAGCTTCATCACTGGCGAAGCGAACGAGCGATGCCAACGAGAGCAGCGCAAGACGGTGACGGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGATGACTACATCGAACCGCTAACTGTTTTTCTCAACCGTTATCGTGAATTGGAGAGTGACCGAATTCGCACTGAGCCAATCTTGAGGCGCAATGTAGATTACGGGCCACAAGTGGGGATGATGCCACCGTATGGGCAGGCGTTTCAGATAGGACACGTCCCGGCAGGGATGTTCGATGCAATGGGCGGATACTATGGTGGAGGTGGGAGCGGCGGGCCGAGCGCGGGGAACGGTAGCCAGCTTTGA

Coding sequence (CDS)

ATGTTGCTGATCCCAAACAAGCCAACCTCCGGCAACAACACACCGAACAGCAATCACCACCTCTCTAACGGTGGAGCCGCCACCGGCAACTCCCCAGCTACCAGCCCAGTCCCGATCACTGCCGCTGCCAACAATGAACAAAACCAACAATGTGTGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGTATCATGCGACGGATCTTACCCTCCCATGCAAAGATATCTGACGATGCCAAAGAGACCATCCAAGAATGTGTATCGGAGTATATCAGCTTCATCACTGGCGAAGCGAACGAGCGATGCCAACGAGAGCAGCGCAAGACGGTGACGGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGATGACTACATCGAACCGCTAACTGTTTTTCTCAACCGTTATCGTGAATTGGAGAGTGACCGAATTCGCACTGAGCCAATCTTGAGGCGCAATGTAGATTACGGGCCACAAGTGGGGATGATGCCACCGTATGGGCAGGCGTTTCAGATAGGACACGTCCCGGCAGGGATGTTCGATGCAATGGGCGGATACTATGGTGGAGGTGGGAGCGGCGGGCCGAGCGCGGGGAACGGTAGCCAGCTTTGA

Protein sequence

MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAANNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL

Homology

[Close]

BLAST of Lsi05G005110 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 5.9e-48
Identity = 120/218 (55.05%), Postives = 140/218 (64.22%), Query Frame = 0


Query: 8   PTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA--NN----EQNQQCVVREQDQYMP 67
           P S    P S   L+    +   +P TS V +  A   NN    +Q   CV REQDQYMP
Sbjct: 6   PFSHYQLPKSISELNLDQHSNNPTPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMP 65

Query: 68  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLW 127
           IANVIRIMR+ LPSHAKISDDAKETIQECVSEYISF+TGEANERCQREQRKT+TAED+LW
Sbjct: 66  IANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILW 125

Query: 128 AMGKLGFDDYIEPLTVFLNRYRELESDR---IRTEPILRRNV-------DYGPQVGMMPP 187
           AM KLGFD+Y++PLTVF+NRYRE+E+DR   +R EP   R          +GP  G+ PP
Sbjct: 126 AMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPP 185

Query: 188 YGQAFQIGHVPAGMFDAMGGYYGGGGSG--GPSAGNGS 208
               +  G +   M    G YY  G SG    S G GS
Sbjct: 186 --GPYGYGMLDQSMVMGGGRYYQNGSSGQDESSVGGGS 221

[Close]

BLAST of Lsi05G005110 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-46
Identity = 88/106 (83.02%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 44  NNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEAN 103
           +N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEAN
Sbjct: 47  SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 106

Query: 104 ERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDR 150
           ERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRELE +R
Sbjct: 107 ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of Lsi05G005110 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.3e-34
Identity = 81/158 (51.27%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 44  NNEQNQQCV-VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 103
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 104 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDY 163
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE+E +R      L R    
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG----LGR---- 134

Query: 164 GPQVGMMPPYGQAFQIGHVPAGMFDAM---GGYYGGGG 198
            PQ G           G V     DA+   GG+YGGGG
Sbjct: 135 -PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of Lsi05G005110 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 3.1e-33
Identity = 61/96 (63.54%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 53  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 112
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 113 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESD 149
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE+E D
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131

[Close]

BLAST of Lsi05G005110 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.1e-33
Identity = 61/96 (63.54%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 53  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 112
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 29  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88

Query: 113 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESD 149
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE+E D
Sbjct: 89  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124

[Close]

BLAST of Lsi05G005110 vs. ExPASy TrEMBL
Match: A0A1S3BKV5 (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 9.6e-102
Identity = 193/210 (91.90%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA-NNEQNQQCVVREQDQY 60
           M++ PNK TS NNTPNSNHHLSNGG ATGNS ATSP+ + A A NNEQNQQCVVREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           HVPAGMFDAMGGYYGGGG GGPSAGNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Lsi05G005110 vs. ExPASy TrEMBL
Match: A0A5D3CPF3 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00390 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.7e-101
Identity = 192/210 (91.43%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA-NNEQNQQCVVREQDQY 60
           M++ PNK TS N+TPNSNHHLSNGG ATGNS ATSP+ + A A NNEQNQQCVVREQDQY
Sbjct: 1   MMVTPNKATSINSTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           HVPAGMFDAMGGYYGGGG GGPSAGNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Lsi05G005110 vs. ExPASy TrEMBL
Match: A0A5A7VC19 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00440 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.3e-100
Identity = 191/210 (90.95%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA-NNEQNQQCVVREQDQY 60
           M++ PNK TS N+T NSNHHLSNGG ATGNS ATSP+ + A A NNEQNQQCVVREQDQY
Sbjct: 1   MMVTPNKATSINSTLNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           HVPAGMFDAMGGYYGGGG GGPSAGNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Lsi05G005110 vs. ExPASy TrEMBL
Match: A0A0A0L2U1 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.9e-91
Identity = 177/209 (84.69%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 2   LLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA-NNEQNQQCVVREQDQYM 61
           +L PN PTS N+ PN+N HLSNGG + GNS ATSP+ + A A NNEQNQQC+VREQDQYM
Sbjct: 33  MLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 92

Query: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERCQREQRKTVTAEDVL
Sbjct: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 152

Query: 122 WAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH 181
           WAMGKLGFDDYIEPLTVFLNRYRE ES  IRTEP+LRRNVDYG QVGM+ PYGQAFQIG 
Sbjct: 153 WAMGKLGFDDYIEPLTVFLNRYRESES--IRTEPMLRRNVDYGAQVGMISPYGQAFQIGQ 212

Query: 182 VPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           VPAGMFDAMGGYYGGGGSGGPSAGN SQL
Sbjct: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]

BLAST of Lsi05G005110 vs. ExPASy TrEMBL
Match: A0A6J1FYN7 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111448893 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 175/210 (83.33%), Postives = 185/210 (88.10%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPIT-AAANNEQNQQCVVREQDQY 60
           +LL  NK +S NNT NSNH  SN      NSP T  +P + AA NNEQ+QQC+VREQDQY
Sbjct: 29  VLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQY 88

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 89  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 148

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDR+RTEPILRRNVDYGPQVGM+ PYGQ FQIG
Sbjct: 149 LWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIG 208

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           HVP GMFDAMGGYY GGG+GG S+GNGSQL
Sbjct: 209 HVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 238

[Close]

BLAST of Lsi05G005110 vs. NCBI nr
Match: XP_038905819.1 (nuclear transcription factor Y subunit B-9-like [Benincasa hispida])

HSP 1 Score: 400.2 bits (1027), Expect = 1.1e-107
Identity = 199/209 (95.22%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAANNEQNQQCVVREQDQYM 60
           MLL PNKPTS NNTPNSNHHLSNGGAATGNSPATSP+P+  A NNEQNQQC+VREQDQYM
Sbjct: 30  MLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPIPVATATNNEQNQQCMVREQDQYM 89

Query: 61  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 120
           PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL
Sbjct: 90  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 149

Query: 121 WAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH 180
           WAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH
Sbjct: 150 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGH 209

Query: 181 VPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           VPAGMFDAMGGYY GGGSGGPSAGNGSQL
Sbjct: 210 VPAGMFDAMGGYYNGGGSGGPSAGNGSQL 238

[Close]

BLAST of Lsi05G005110 vs. NCBI nr
Match: XP_031738736.1 (nuclear transcription factor Y subunit B-9-like [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 8.1e-103
Identity = 195/210 (92.86%), Postives = 200/210 (95.24%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA-NNEQNQQCVVREQDQY 60
           M+L PNKPTS NNTPN+NHHLSNGG ATGNS ATSP+ + A A NNEQNQQCVVREQDQY
Sbjct: 1   MMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210

[Close]

BLAST of Lsi05G005110 vs. NCBI nr
Match: KAE8650106.1 (hypothetical protein Csa_009480 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 8.1e-103
Identity = 195/210 (92.86%), Postives = 200/210 (95.24%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA-NNEQNQQCVVREQDQY 60
           M+L PNKPTS NNTPN+NHHLSNGG ATGNS ATSP+ + A A NNEQNQQCVVREQDQY
Sbjct: 31  MMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 90

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 91  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 150

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 151 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 210

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL
Sbjct: 211 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 240

[Close]

BLAST of Lsi05G005110 vs. NCBI nr
Match: XP_008449191.1 (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 2.0e-101
Identity = 193/210 (91.90%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA-NNEQNQQCVVREQDQY 60
           M++ PNK TS NNTPNSNHHLSNGG ATGNS ATSP+ + A A NNEQNQQCVVREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           HVPAGMFDAMGGYYGGGG GGPSAGNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Lsi05G005110 vs. NCBI nr
Match: TYK13777.1 (nuclear transcription factor Y subunit B-9 [Cucumis melo var. makuwa])

HSP 1 Score: 377.5 bits (968), Expect = 7.6e-101
Identity = 192/210 (91.43%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MLLIPNKPTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA-NNEQNQQCVVREQDQY 60
           M++ PNK TS N+TPNSNHHLSNGG ATGNS ATSP+ + A A NNEQNQQCVVREQDQY
Sbjct: 1   MMVTPNKATSINSTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 121 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIG 180
           LWAMGKLGFDDYIEPLTVFLNRYRE ESDRIRTEPILRRNVDYGPQVGM+ PYGQAFQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 181 HVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 210
           HVPAGMFDAMGGYYGGGG GGPSAGNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of Lsi05G005110 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 192.2 bits (487), Expect = 4.2e-49
Identity = 120/218 (55.05%), Postives = 140/218 (64.22%), Query Frame = 0


Query: 8   PTSGNNTPNSNHHLSNGGAATGNSPATSPVPITAAA--NN----EQNQQCVVREQDQYMP 67
           P S    P S   L+    +   +P TS V +  A   NN    +Q   CV REQDQYMP
Sbjct: 6   PFSHYQLPKSISELNLDQHSNNPTPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMP 65

Query: 68  IANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLW 127
           IANVIRIMR+ LPSHAKISDDAKETIQECVSEYISF+TGEANERCQREQRKT+TAED+LW
Sbjct: 66  IANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDILW 125

Query: 128 AMGKLGFDDYIEPLTVFLNRYRELESDR---IRTEPILRRNV-------DYGPQVGMMPP 187
           AM KLGFD+Y++PLTVF+NRYRE+E+DR   +R EP   R          +GP  G+ PP
Sbjct: 126 AMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPP 185

Query: 188 YGQAFQIGHVPAGMFDAMGGYYGGGGSG--GPSAGNGS 208
               +  G +   M    G YY  G SG    S G GS
Sbjct: 186 --GPYGYGMLDQSMVMGGGRYYQNGSSGQDESSVGGGS 221

[Close]

BLAST of Lsi05G005110 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 )

HSP 1 Score: 188.0 bits (476), Expect = 7.9e-48
Identity = 88/106 (83.02%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 44  NNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEAN 103
           +N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEAN
Sbjct: 47  SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 106

Query: 104 ERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDR 150
           ERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRELE +R
Sbjct: 107 ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of Lsi05G005110 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 )

HSP 1 Score: 188.0 bits (476), Expect = 7.9e-48
Identity = 88/106 (83.02%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 44  NNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEAN 103
           +N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEAN
Sbjct: 18  SNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEAN 77

Query: 104 ERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDR 150
           ERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRELE +R
Sbjct: 78  ERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 123

[Close]

BLAST of Lsi05G005110 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-35
Identity = 81/158 (51.27%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 44  NNEQNQQCV-VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 103
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 104 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDY 163
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE+E +R      L R    
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG----LGR---- 134

Query: 164 GPQVGMMPPYGQAFQIGHVPAGMFDAM---GGYYGGGG 198
            PQ G           G V     DA+   GG+YGGGG
Sbjct: 135 -PQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of Lsi05G005110 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-34
Identity = 62/96 (64.58%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 53  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 112
           VREQD+Y+PIAN+ RIM++ LP + KI  DAK+T+QECVSE+ISFIT EA+++CQ+E+RK
Sbjct: 19  VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRK 78

Query: 113 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESD 149
           TV  +D+LWAM  LGF+DY+EPL ++L RYRELE D
Sbjct: 79  TVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD 114

The following BLAST results are available for this feature:

BLAST of Lsi05G005110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFD8	5.9e-48	55.05	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84W66	1.1e-46	83.02	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	8.3e-34	51.27	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q60EQ4	3.1e-33	63.54	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
P25209	3.1e-33	63.54	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]

BLAST of Lsi05G005110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BKV5	9.6e-102	91.90	nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]
A0A5D3CPF3	3.7e-101	91.43	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7VC19	5.3e-100	90.95	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0L2U1	5.9e-91	84.69	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0494...	[more]
A0A6J1FYN7	1.7e-90	83.33	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lsi05G005110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905819.1	1.1e-107	95.22	nuclear transcription factor Y subunit B-9-like [Benincasa hispida]	[more]
XP_031738736.1	8.1e-103	92.86	nuclear transcription factor Y subunit B-9-like [Cucumis sativus]	[more]
KAE8650106.1	8.1e-103	92.86	hypothetical protein Csa_009480 [Cucumis sativus]	[more]
XP_008449191.1	2.0e-101	91.90	PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo]	[more]
TYK13777.1	7.6e-101	91.43	nuclear transcription factor Y subunit B-9 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi05G005110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21970.1	4.2e-49	55.05	Histone superfamily protein	[more]
AT5G47670.1	7.9e-48	83.02	nuclear factor Y, subunit B6	[more]
AT5G47670.2	7.9e-48	83.02	nuclear factor Y, subunit B6	[more]
AT5G47640.1	5.9e-35	51.27	nuclear factor Y, subunit B2	[more]
AT2G38880.2	3.8e-34	64.58	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 125..143 score: 31.46 coord: 87..105 score: 43.9 coord: 106..124 score: 32.06
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR11064:SF115	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9	coord: 27..175
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 60..123 e-value: 2.3E-25 score: 88.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 46..160 e-value: 1.6E-40 score: 140.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 56..149
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 27..175
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 90..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005110.1	Lsi05G005110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding