Lsi05G005020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC1
Location	chr05: 6304099 .. 6312356 (+)
RNA-Seq Expression	Lsi05G005020
Synteny	Lsi05G005020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAACCCTCCCCTCCCGTCTAAAACCTCCTCAGCCGTGCTGTCGAGTGCTGCCGCCGCTGTCTTTCTCGATTTTGCTTCTCCGCCGCGCAGTTCTTCCGAGTTTTGTTCTCAGGTATTCTCTCTGTCTGCAACTTTGCCTTACAAAGTCTTGTCTTGGAGCTCTCTCTTTCTAATTGTTTTTCTTATTCCGTTGCAAGCATATTTCTTAAAGCCTAAGTTGACCCTTATCTGTCTGATTTTGTTCCCATCCCTTTGTTTAAAGTTACAGCCGAGCCCGACGACCAAATAACTGTGCGCATACTGAATCGAAGGTTGATAATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGAAGGTGTTGGCAAAGAAGGCATTGAATGGATTATGAACCTTTCAGACGTACCCATGAAGCTCCCACCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATGTACTCTTCTTTTCCCTTTCCCATATTTTGTTTGTTTCATCATTTCGCTCTTTCTTATTCAAATTCTAAGAATTCTTTTCAATTCATGGAAGTATAAATTTTGTATTGTTTTATTGCTCAAGCTTAGTAGAAGCTCGAGTAAATATCCTTTTTAGCATGTTTACTGTAGTTGAATGTTAAATGTGAACCTATTAAATTACGTTTCATGCTTCTGGAGGGAAGTGAATTTAATGGAATCTGTGTACTTTACTTGATTTTTATTCATAGTACGTATGTTATTTTTTATGTAATAATTGGCTGGCTTTAATTTTCTTCTCATGGTCCGTGTGGAAAACGTGGACTTCTGTAGACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGCGTTGATAACAGTTTACGTCTGGATTATTTTCGCAACAACTTTAAAGTTGAAGTTATTGATCTCAGAGAGGATGACATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATACTGATAGCCGAGGTAGGTAATCAAGCACAATGAATTAAAACTATATACAATTGATTATTTTAGTGAGACTTTGCTGAGTTCTTGGTGTTTACCTCCTTGTCATCACTTCTGGTGTTGTATTGTGTGTCCAATATATCAAAAAGCTTGAGATTTAGCCCAAGCTACAAGTTCTTAGCTTTCTTTGCTTCATGTGAAGCTTGTGCTTCGATAGGGAAAAACCGTATGCTTTTAATGACCATGTATGAATGTTTGGAGTCTTTGTGGCTTATGAACTTGTTATACGAATTACGTTGGTTGTTGTCTGTTGTTCAACATCTGTAAGATTGTTCATGTATTCAAAGCTAATAAAATGGGGATATTGGTGGTGATGGCTTGGGATGTTTAGGGTTAGTCTTGTTAGACATGACCCAGGGTGCAAGCCCACACTTTGGTTAAAATGAAAAAAAAAATTGTGTGTGTGTGTGTGCTTTTTTTAAAATGGAAACGAGACTTTTTCATTGAATTAATGAAATAAGTCGAATGCTCAAATTACAAGATACAAAGCAAAATGAAACTTAACAACGCTTGAAAATACAAGAACAACACTAGACCAATACTACTGAAAAACCAAACCTTCTAAAATAAGAGGCTTTGCTAAACAATGAAACCAATAATCAAGAGACCATCCAACCGAAAAAACATCCAGCAGAGTGCAAATCTTGAACTTCAAAAGAAATAGAACATTGAGAGCAAAAGAGTTTTGAATGTGAACTTGAAGCATGATTAGCTGGTCCGAATCCAATACAACAACCTTACTAGAAGCCGAAACATCCGAGGATCAACTTTTGAACCAACCAAACACAAAACTTCCAAAAACTAAACTTTAAAAACCTGTGGAGGATGCTTGCATATTCTTAAACAAAGGGGTAGTCCGATGAGTCTTCATAAAAACAGAACCCAACGAAGATTAACGCAGTAATTTGGTTGTAAAGAATAGGCACTAAAACTTCAAGCTAATAAAGAAGAACTCCAACTTTTACGCCGAAGATAATCACAAACCAAAAAGTCTCTTCCATTTAAAAAATCCTTTCAAATCCTCAAAGATTCCTTTATCAAGAATTTCAAAGGTAACGTCTTTCTCTCTATCCACTAAGTTGACACCCCTCCAACAATCTTTTCCTTGTATTATGAACTACTATTGGATCTTTAATGAAGACTAAACAAAAATCACAATCCCAATAGAGCCCAAACATCTACAACATATTTAAACCAAGAACGATACCACGAGCATCAATTAGTGAATGCAGATGTTGTGGAATTTCACTCCTATCAAGAGGAGTAAATAAGGAAACATCAGCCTTACCAATCGAATGAGCATCCTCTGATTGAAATAATTGACAAATGTCATTACCAAAACCATCAACGGTCTCTTCTTCAACTTGTAATTCCTCTGTTTCATAATTTTCTAGCTCTTCACTGCTAGCACTAGTTAATGAATTTTCGTTCGAATCCCCATTCGATCCTTGTTTTTTGTGGCAAAAGTTGCTTGGAATACTAGCTAGGAGTCCTCTCACAAAACTTACGTTTGAGCCAGGGATTTTAAAATTCGAATGAAAAAAAGAAGGATGATTCGAAGAAGTGTTGTCAGCCCTTTGGTCACAATCATGGACCAAGAGTTTAGAAACAAAGTCTTTTTCCTGGAAAAATGCTTGGGAAAAGGCTTGAGCAAGTCTGAATGCTTCTTTGATTTCAACGGTTGAGAGTCGCGCTCTGGGGGAGAAGAAACATAATTACTTTTGCACTGGAACAAAGAAGGGGCTTGTCTAAAGATTAGTTCAATGTCTTTTTTGGAAAGGATCTAAAGATTCAAACTCTAATCCTTTATATTGTACAACTTGATTCAATCGGACAACTGGGTTAGTAAAATCCTTAACAAATAAGTCACCTTTCACCCTTGAGGGAGGATCAATTAGTTCAATGTCTCCAAAATTCAGAAAAATAGTTCCACACTTCTCATCCGCAATTTCTATAGTTGAAGGTATGAAACCACATAAATTTCTTTTAACTTGAATCTTAGCTTCAGAAACGTTAAGAAGATTCAAAAGTATATGTTGCAATATCTTCCAGGCCTCCAAAATAGGCTCCAATAGCTTCAAAAATTTCCCTACACCAATAGTCTAACGGGAAATTCTTGATTGAGATCCATCCTCCATATCCTGTTGAATACAACGGCTAGCTATGCACAAGCTTGTTCTACTTCTCAAAGTTTAGATAAAACGAACCACAAATCTGCCATTTGCCCGGTTCCTCGATCAATTCCTCGAGAGTTCCTTGGTCCAGTTTCAATAAGGCATTTTTCGCAAATAGAGGATTGACAATGACATCCGTTTGAAAGTAATGTTTTAACGTTTTAGCTATTTTCGACCAGTCAATAAACTCAAACAATCTGGAAACTATACACAAGTTACTAAAATCTTCTTGAAAAATATCAGAGCTCTTTATCACCCAATAATGGATTTTACTCTGTTTATCGGGTACTAAAACAGGGCCTTGCTTCAGACGTGGAAAAGTTGCTGATTCCATGCTCAGTTTCTTCGATTGGAAAATAGAGCTTTGTTGAGCTTTTGAATACTTCACAATGTCCACGTAGTATTTTCCCTAATTTGGCGAAACAACATTTGCAGGCTCCCTTCTCGGAATAAATGGCTTAGCAGAAGCTTCAAAATTTTTCTAAAAATCTAAGAGCATTAACGCAAAAGAATACCAACCTTGCATTGATTCTCTGGAAGGAATTTGAATAAAGTATCTTCCCCCAAAAGATGACCAAACAACGCATCTTAATAATCCAACCTGAGGAGTTGGGGAACTTACACAATTTTGTGGCACTTGAACCATCACGGCCGTTCCTCACAAAGAATCGTGAAGCAGAACCCTTGATCGTATCTAAAATATTTTCAACAAACCAACTGTGCTGAGACTTCGAGAGGAGAGTGAGCGGATATAGGCCTCATCCTTTTGTTTGGGGTGCAAGTGGTGGTTTGAGACCTTTGCAAAATCTTTGGAAAGCTATCCCCAATGTTTTCCTTTATTCTCTCAATTTATCATTTGCTCTGCTGGTGAAGTCTTGAAGGCTTATTTTTGGGAGGATCCCTAGTGGGGGATGAACCTTTTTGTGCTTTGTTTTGGAGGTAATATCTCCTTTCGAATAAGAGGTTGCATTATGTGGCCTTAGTGTTGGCTTCAATAGACCCTTCTTCAATTCCTTTAGGGTTCCAGCGTCCTTAGTATGATAGGGAGACATTGAAGTTGGCCGATCTTTTTTCCTTCTTCGAGACCAGCATGTCATTCCAAGGAGAAGGAATGTTAGTATTTGGCCCTCCGATCCTCATAGGGGTTTCTTTTGCCATTTTTTTTCCTCATATTTTGTCCTCCCCTTCTCCACCTCTTGTTGCCTCTTTTTTTTTTTTTTTTCCCTCTCTCTTCCTATGTTTTGTTCCCGCAACAGTGCACTGAGATAAGAGGTATGGGGAGGACCTATTTCATTTGTTTTGGGATTGCTAGTTTACTCACCACCGTTGGAGTTTTTGGTTGAGAGTTTGGTGTTTGTTTGGTTTGGAATAGAGATGGCACCCAGGTGGAAGAGGTGCTTTCATGCACTTCATTCAAGGAGCAGGGCAAAGTTCTGTGGCATGTTAGCTTTTTTGTAGTTTTGTGGGGCATTTGGATTGACATGAACAATAGAATTTTTACAGAGGTGGAGAGATAGGTGAGGAAGTTAGGGAGGTGGCTAAGTTCAATGTTGTGGGCGTCAGTCACTAGGCTTTTTTGTAATTATGAGCCTAGTCTTGTTTTTTTGGATTGGAGTCCTTTTTTGATGTTGAGGTCAATCTCCCATTTGTTGGGGCTTGTCTGATTTGTGTGTCCTTTGTATATTCTTTCATTTCTTACCAAAAAAGAAAAAAAAAATGGGGTTGGAAATTTTAAAAAAATGAAAATTCATGGAAGTGAGACTTTTATTTATTTACTTATATATTTTTATGAAATAATTATTATTATAGCATAGAGTATTCTTTTTTAGTCTTCTAGAGCATTCCTCGTGGTTAGGGATGGTTAATAATGAATTGAATATATGTTCTTTCTGTATTTTTATGTAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCAAGGCTTTTCGAGTATTCAGGTATTTCGGTGTATATATTTTAAAATTTAATGTTCTTATGCATGCTGATGCTGAAAACTTCTAAATGCTTGTTGTCAAATACTTTAGATTTGACTCTTATCCTTGAACTTTTCGAGGATACTTAACTAATAATTTCGGTTTAAAATTAGATAGGGACACACCAAATGAGAAGAATACAGTTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACAACGCCTTACAGGTATTTTTCTTGTTGCTTTTGGAGTTCATGCTCTATGCATAACTTTTCTTAATTATTAACTTGTTTCACAACAATTTTATTTCTCATTATTGATGATGAATGTATAATTGGTGATTCAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGACACACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGTAACTGAACTCTAAATTTTATTTCTTATCTGTTGAAAGATAGGGAAGAAGTGGTGTGCATGGGTAGATGAGCGAAGCTGATGAGTTATGCTCAGAATAACATGTTTTGAATATGAAATTTTTTATTTATGTGCTTGTTGTAAAATTATTACATATGAATAGGTTCTTTATTTTATTTATTTTATAAGAACAAATTTTAATGATGTATGAAATTTACAAAAGAAGGGTTTATCCTAAGCCAATGGAGTTATAAAAGATCTTTCCAATTGGTCAAAAGAGAAATGAGAGAATAAGATCTATAACAAGTAGCGCATTTACACCAAGTCGTAGCAAGGAAAATAATATGTTCAAAGAAGCTATCAAAAGTGTTTTTCCTATCTTGAAAAAGGCAGTTGGACAGCCTGAATGATTCATCCGAACTCCAAAGGCTTCTTTTTCCCTCAGTGTAAGGGTGGTCACTGAGAGAGTAGTTGAGAAGACAGTTGATGTCTCTTGAATAAATAAGGTGCCGATTTGATGCCGCAATCATTTCGTTCTACTCTTAAAGCTATTCTTCTCTCCTCTCCAATGAGAGAGGTCTTTTGTAAATTTTCGGTTTTGGGACCCTCCCTTTTGTTCATACCATCAATGAAATTGTTTCTTATCTCGAAAGAGATATCACTTTGAACGTGGTGCCTGTGCTATAAGGCTAATTGTTTCAGTTCATAATGGGATATTGTTGCTCAGTAGTTAGCAGGTGTACGTTTCTTAATTTTTGCTTCAAATATTTATAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTGAGTAATTACGTTACTGTGTTACTCAAAGATTCATTGATAGTTTGAACTAATGAAATTTGTGATATTAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTTAGTTTCCTTCTTACATTTGCTATTAATTATGTACGTACTTGGGACAATATGATGGTGATGATTCGGAGATGGGAAGGTTTGCTTGAGAATAAAGTTCTTGTCATGTATATAACTAATTTTCCTACTTTGCGAGTCTCGTTTATATCTTGGATGGAGTTATAAGCCTTGTAACCTTTTAAATATCAAAGGTGTGTTACCATGTAAAAGAAAAAGAGGGGTAACCTCTACCCCTTGCCTTTAGGCTATTCTTTGATTCTTTTGAAGAATAGATGTCTCTGTTTCTTATAAAAAATGCACTTCTGATGAATGAATGAAGAATTATTTGTTGTTTCTGATACTCAAAAGATGGATTCCAAGTTGTTGCATGCCGTTGGCCTCTTTTTGCTAAATTCAAATTGCATTTCTTTTTATCGACATTTTTTATTTTGTAGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTTGCATTGCGACGTGTGAAAGATCATTTCATTTGTAAGTAATGGTTGATTCTACATTTTTTAAGATGCTTTTAGTGCCTTGAACAAGTATTTTGAGTACTAGTATGTTTTTTTTTGTAATTTTTATGAGAACTCTACTAGTACTTCTTCACATAGTAGTACTTCAAGTGCCTTTTAAATTACTATAAAAATACACTTACAAATTACTTTCAAACACAATAAGTCAAACATGCTCCCAAATAAACATAAACTTAGTATCTTTTTTATTTTTCACTTATTATCACCTTTTTTTAGTTCAACTACAAGGAGAGATTTGAATCTCTAACCTTCAGGTTGAAGATATAATGCCTTAATCAATTGAGCTAACTTTAGAGTGACTCTTAGCTATACTCAAGTTGGCCCTTATCTTTGTTAGAAGAACACATTAACATTGTTTCAAAAAACTCATTTTTTTCATTGAGATTCGGTTTATATTTTCATTCATTTTCTCTGTGCAGTTAAGATTGAATCAACAGGAGCTTTACCTCCTCAGGTGCTATTCACTGAAGCTGTAAAAATTTTGGAAGATAAGTGTGAACGTTTAATTGCCGAGTTGTCTTGATTCTTCTCGTCCAAAAGGCACGGACCTGTATATTATTTCATTATATTAAGAGGTCACCAATTTTTGTAATATATGAGTGGAATAGAAAGTTTTTTTCTTTTGAATTGACAGTGGAATAGCTTCATTTCATTAAATTATACTGATGAAATGAAGCATTTGTATCTCTAAAGACTCTAAGGTACTCTCTACCCTTGTCTTTGCTTTTTATGTTTTAGTAAGATCAAGCTTTCTTCTTCCCTTGCCTTTTCTGATGCTAAATGAATAATACTTTCACTTGATCTG

mRNA sequence

CTTAAACCCTCCCCTCCCGTCTAAAACCTCCTCAGCCGTGCTGTCGAGTGCTGCCGCCGCTGTCTTTCTCGATTTTGCTTCTCCGCCGCGCAGTTCTTCCGAGTTTTGTTCTCAGTTACAGCCGAGCCCGACGACCAAATAACTGTGCGCATACTGAATCGAAGGTTGATAATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGAAGGTGTTGGCAAAGAAGGCATTGAATGGATTATGAACCTTTCAGACGTACCCATGAAGCTCCCACCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGCGTTGATAACAGTTTACGTCTGGATTATTTTCGCAACAACTTTAAAGTTGAAGTTATTGATCTCAGAGAGGATGACATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATACTGATAGCCGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCAAGGCTTTTCGAGTATTCAGATAGGGACACACCAAATGAGAAGAATACAGTTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACAACGCCTTACAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGACACACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTTGCATTGCGACGTGTGAAAGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCTCAGGTGCTATTCACTGAAGCTGTAAAAATTTTGGAAGATAAGTGTGAACGTTTAATTGCCGAGTTGTCTTGATTCTTCTCGTCCAAAAGGCACGGACCTGTATATTATTTCATTATATTAAGAGGTCACCAATTTTTGTAATATATGAGTGGAATAGAAAGTTTTTTTCTTTTGAATTGACAGTGGAATAGCTTCATTTCATTAAATTATACTGATGAAATGAAGCATTTGTATCTCTAAAGACTCTAAGGTACTCTCTACCCTTGTCTTTGCTTTTTATGTTTTAGTAAGATCAAGCTTTCTTCTTCCCTTGCCTTTTCTGATGCTAAATGAATAATACTTTCACTTGATCTG

Coding sequence (CDS)

ATGTCCGGTAAAGATAAGAGTTTGCATAATATGTCGGAGTCGGAATCTGAACAAGAAGGTGTTGGCAAAGAAGGCATTGAATGGATTATGAACCTTTCAGACGTACCCATGAAGCTCCCACCACATTTGGAATTGCAGAGAACTCGAGTCGAATGCAAAGCCGATGCTCCCATTCATACAGATACCATACAGTATTCTGGAGCATTTGCTTCGATGGGCGTTGATAACAGTTTACGTCTGGATTATTTTCGCAACAACTTTAAAGTTGAAGTTATTGATCTCAGAGAGGATGACATTGAGTTTGACATGATTGGCATTGATCCATCACTTGCTAATGCATTTCGAAGAATACTGATAGCCGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCAATTCATGTTGATCCAAGGCTTTTCGAGTATTCAGATAGGGACACACCAAATGAGAAGAATACAGTTGTTTTTAGACTCCACGCTCGCTGTGAACGTGGAAAACAACGCCTTACAGTGACATCAAAAGCATTGACGTGGTTGCCAAATGGTAGTGAATTTCCCTTGGTATCAGACAAATCAGTTTCAAACTCAAAACCCAAAACCTATACTTCTTTTAGTTGCAGCCAAGACACACTGCCAGAATTTTCCAACAATCCAATTGGTCCAAAGGACAGTGATATTATACTGGCTAGACTTGGCCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCCCCAGTGGCCACTGCTTGGTACAGGATGCTTCCTGAGGTTGTACTCCTGGAAGAGATAGAGGATGAGCTAGCTGAAGAACTAAAAAAGAAATGTCCTGTTAATGTATTTGACATTGAAGACATAGCTGATGGTAAGAAAAGGGCAACTGTAGCACGCCCACGAGCTTGCACATTGTGTAGAGAATGCATAAGAGGAGATGCATGGGAGAAACGTGTTGCATTGCGACGTGTGAAAGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCTCAGGTGCTATTCACTGAAGCTGTAAAAATTTTGGAAGATAAGTGTGAACGTTTAATTGCCGAGTTGTCTTGA

Protein sequence

MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERLIAELS

Homology

[Close]

BLAST of Lsi05G005020 vs. ExPASy Swiss-Prot
Match: Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.6e-78
Identity = 167/363 (46.01%), Postives = 221/363 (60.88%), Query Frame = 0


Query: 43  LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFD 102
           +E  RTRV        +  T  + G ++  G D++   D F  NF+V+V+ + E+ +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 103 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 162
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 163 SDR--DTPNEKNTVVFRLHARCERGKQRL-------------TVTSKALTWLPNGSEFPL 222
            ++  +   E +T+ FRL  RC R                   V ++ +TW+P G++  L
Sbjct: 127 RNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADL 186

Query: 223 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGM 282
                                     F    I P   DI++A+L PGQEI+L  H VKG+
Sbjct: 187 --------------------------FPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 283 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVAR 342
           GK HAK+SPVATA YR+LP++ LLE +E E AEEL +     V ++++I  GKK A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVAN 306

Query: 343 PRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERLI 391
           PR  T  RE  R +  +K V L RV+DHFIF +ESTG LPP VL +EA+K+L  KC+R +
Sbjct: 307 PRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFL 340

[Close]

BLAST of Lsi05G005020 vs. ExPASy Swiss-Prot
Match: O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.3e-77
Identity = 164/363 (45.18%), Postives = 220/363 (60.61%), Query Frame = 0


Query: 43  LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFD 102
           +E  R+RV        +  T  + G ++  G D++   D F  NF+V+V+ + E+ +EFD
Sbjct: 7   VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66

Query: 103 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 162
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126

Query: 163 SDR--DTPNEKNTVVFRLHARCERGKQRL-------------TVTSKALTWLPNGSEFPL 222
            ++  +   E +T+ FRL  RC R                   V ++ +TW+P G++  L
Sbjct: 127 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 186

Query: 223 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGM 282
                                     F    I P   DI++A+L PGQEI+L  H VKG+
Sbjct: 187 --------------------------FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246

Query: 283 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVAR 342
           GK HAK+SPVATA YR+LP++ LLE +E E AEEL +     V +++++  GKK A VA 
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVAN 306

Query: 343 PRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERLI 391
           PR  T  RE  R +  +K V L RV+DH+IF +ESTG LPP VL +EA+K+L  KC R +
Sbjct: 307 PRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFL 340

[Close]

BLAST of Lsi05G005020 vs. ExPASy Swiss-Prot
Match: P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)

HSP 1 Score: 286.2 bits (731), Expect = 5.6e-76
Identity = 165/350 (47.14%), Postives = 215/350 (61.43%), Query Frame = 0


Query: 43  LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFD 102
           +E  RTRV        +  T  + G +A  G D++   + F  NF+V+V+ + ED +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 66

Query: 103 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 162
           M+GID ++ANAFRRIL+AEVPTMA+EKVLV NNTSIVQDE+LAHRLGLIPI  DPRLFEY
Sbjct: 67  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 126

Query: 163 SDR--DTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKT 222
            ++  +   E +T+ FRL  RC R       +S       N   +          ++  T
Sbjct: 127 RNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVY----------TRHMT 186

Query: 223 YTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATA 282
           +       D  PE     I P   DI++A+L PGQEI+L  H VKG+GK HAK+SPVATA
Sbjct: 187 WVPLGNQADVFPE---GTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATA 246

Query: 283 WYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRG 342
            YR+LP + LLE +E E AEEL +     V ++E++  GKK A VA  R  T  RE  R 
Sbjct: 247 SYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFRH 306

Query: 343 DAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERLIAEL 391
           +  +K V L RV+DH+IF +ESTG LPP VL +EA+KIL  KC R + EL
Sbjct: 307 EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340

[Close]

BLAST of Lsi05G005020 vs. ExPASy Swiss-Prot
Match: Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.4e-71
Identity = 149/352 (42.33%), Postives = 212/352 (60.23%), Query Frame = 0


Query: 41  PHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIE 100
           P+LE +RT+V        +     YSGA+ S+G DNS  L+ F+ NFK+ ++    +++ 
Sbjct: 13  PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72

Query: 101 FDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLF 160
           F+MIGID  +ANA RRI+I+E+PTMAIEKV + NNTSI+QDEVLAHRLG+IPI VDPR F
Sbjct: 73  FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132

Query: 161 EYSDRDTPNE----KNTVVFRLHARCER----GK-QRLTVTSKALTWLPNGSEFPLVSDK 220
            +     PN+    ++T++F+L  +CE+    GK    T  SK L W+P   +       
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ------- 192

Query: 221 SVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGMGKTH 280
                           ++  P   + P  P + DI + +L PGQ I+++ +  K +G+ H
Sbjct: 193 ----------------EEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREH 252

Query: 281 AKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVARPRAC 340
            KWSPV TA YR+ P + + + I+ + A +L +KCP  VFDIED      +   ARP  C
Sbjct: 253 IKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIED----SGQVVAARPLDC 312

Query: 341 TLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKC 384
           T+CRECIR   +E+ V + RV+DHFIF IESTGAL  + +F EA+KI  +KC
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKC 333

[Close]

BLAST of Lsi05G005020 vs. ExPASy Swiss-Prot
Match: O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 8.1e-67
Identity = 143/360 (39.72%), Postives = 211/360 (58.61%), Query Frame = 0


Query: 43  LELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFD 102
           ++  RT +   +D      ++ + G +     DN   LD F+ N KV +  L ++ + F+
Sbjct: 4   VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 63

Query: 103 MIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEY 162
           + GID S+ANAFRRILIAE+PT+A E V + NNTSI+QDEVL+HR+GL+PI  DP +F++
Sbjct: 64  ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 123

Query: 163 SDRDTPNEK------NTVVFRLHARCERGK---------QRLTVTSKA----LTWLPNGS 222
                P ++      +TVVF L+ +CE  K         +RL V S+     L W P G 
Sbjct: 124 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGR 183

Query: 223 EFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHA 282
           +                             F++NPI   + DI++A+L PGQEI+LEAHA
Sbjct: 184 Q--------------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHA 243

Query: 283 VKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRA 342
           + G+G+ HAK+SPVATA YR+LP + +L  IE E A + +K  P  V ++E+  DGKK+A
Sbjct: 244 ILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQA 303

Query: 343 TVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKC 384
            VA  R  T+ REC+R   +  +V L RV+DH++F +ESTG + P VLF +++ +L+ KC
Sbjct: 304 RVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKC 335

[Close]

BLAST of Lsi05G005020 vs. ExPASy TrEMBL
Match: A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)

HSP 1 Score: 736.1 bits (1899), Expect = 7.6e-209
Identity = 361/391 (92.33%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           ESTGALPP+VLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Lsi05G005020 vs. ExPASy TrEMBL
Match: A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)

HSP 1 Score: 733.4 bits (1892), Expect = 4.9e-208
Identity = 360/391 (92.07%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSG+DK+LH+MSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TS+ALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           ESTGALPP+VLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Lsi05G005020 vs. ExPASy TrEMBL
Match: A0A0A0L637 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 GN=Csa_3G047880 PE=3 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 3.5e-206
Identity = 364/392 (92.86%), Postives = 378/392 (96.43%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSESESEQEGV KEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGAFASMG DNSLRLD FRNNFK+EVIDL+EDDIEFDMIGIDP+LANAFRRILI+
Sbjct: 61  DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVL ANNTSIVQDEVLAHRLGL+PI VDPRLF+YSD+D PNE NT+VFRLHA
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTL-PEFSNNPI 240
            CERGK RLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQ+TL  EFSNNPI
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 300
           GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL+EEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300

Query: 301 EELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           EEL+KKCPVNVFDIEDIA GKKRATVARPR CTLCRECIRGDAWEKRVALRRVKDHFIFK
Sbjct: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 361 IESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           IESTGALPP+VLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Lsi05G005020 vs. ExPASy TrEMBL
Match: A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)

HSP 1 Score: 715.3 bits (1845), Expect = 1.4e-202
Identity = 352/381 (92.39%), Postives = 370/381 (97.11%), Query Frame = 0


Query: 11  MSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFA 70
           MS+SESEQ   GKEGIEWIMNL DVPMKLPPHLE+QRTRVECKADAPIHTDTIQYSGA+A
Sbjct: 1   MSDSESEQV-AGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYA 60

Query: 71  SMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKV 130
           SMGVDNSLRLDYFRNNFK+EVIDL EDDIEFDMIGIDP+LANAFRRILIAEVPTMAIEKV
Sbjct: 61  SMGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKV 120

Query: 131 LVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHARCERGKQRLT 190
           LVANNTS++QDEVLAHRLGLIPIHVDPRLFEYSD+DTPNEKNT+VFRLHARCERGK RLT
Sbjct: 121 LVANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLT 180

Query: 191 VTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILAR 250
           VTSK LTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQDTLPEFSNN IGPKD+DII+AR
Sbjct: 181 VTSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIAR 240

Query: 251 LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNV 310
           LGPGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEELKKKCPV+V
Sbjct: 241 LGPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDV 300

Query: 311 FDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQV 370
           FDIEDIA+GKKRA VARPR+CTLCRECIRG+AWEKRV+LRRVKDHFIFKIESTGALPP+V
Sbjct: 301 FDIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEV 360

Query: 371 LFTEAVKILEDKCERLIAELS 392
           LFTEAVKILEDKCERLIAELS
Sbjct: 361 LFTEAVKILEDKCERLIAELS 380

[Close]

BLAST of Lsi05G005020 vs. ExPASy TrEMBL
Match: A0A1S4DX61 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=LOC103491032 PE=3 SV=1)

HSP 1 Score: 712.6 bits (1838), Expect = 9.0e-202
Identity = 357/392 (91.07%), Postives = 372/392 (94.90%), Query Frame = 0


Query: 1   MSGKDKSLH-NMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIH 60
           MSGKDK+LH  M+ESESEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECK DAPIH
Sbjct: 1   MSGKDKNLHIMMTESESEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKGDAPIH 60

Query: 61  TDTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILI 120
           TDTIQYSGAFASMG DNSLRLD FRNNFK+EVI+L+ DDIEFDMIGIDP+LANAFRRILI
Sbjct: 61  TDTIQYSGAFASMGFDNSLRLDNFRNNFKIEVINLKGDDIEFDMIGIDPALANAFRRILI 120

Query: 121 AEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLH 180
           AEVPTMAIEKVL ANNTSIVQDEVLAHRLGLIPI VDPRLF+YSD+D PNE NT+VFRLH
Sbjct: 121 AEVPTMAIEKVLFANNTSIVQDEVLAHRLGLIPIRVDPRLFKYSDKDAPNENNTIVFRLH 180

Query: 181 ARCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPI 240
           ARCERGK RLTV S+ALTWLPNGSEFPLVSDKS+ NSKP+TYTSFSCSQD LPEFS N I
Sbjct: 181 ARCERGKPRLTVKSEALTWLPNGSEFPLVSDKSIPNSKPQTYTSFSCSQDKLPEFSKNSI 240

Query: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 300
           GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV+LLEEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVLLLEEIEDELA 300

Query: 301 EELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360
           EELK+KCPVNVFDIEDIA GKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK
Sbjct: 301 EELKRKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFK 360

Query: 361 IESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           IESTGALPP VLFTEAVKILEDKCERLIAELS
Sbjct: 361 IESTGALPPNVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Lsi05G005020 vs. NCBI nr
Match: XP_038903474.1 (DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903475.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903476.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida])

HSP 1 Score: 759.2 bits (1959), Expect = 1.7e-215
Identity = 377/391 (96.42%), Postives = 386/391 (98.72%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDKSLHNMS+SESEQEGV KEGIEWIMNL DVPMKLPPHLELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKSLHNMSDSESEQEGVAKEGIEWIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGAFASMGVDNSLRLDYFRNNFK+EVIDL+EDDIEFDMIGIDP+LANAFRRILIA
Sbjct: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGL+PIHVDPRLFEYSD+DTPNEKNT+VFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLVPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
            CERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG
Sbjct: 181 CCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240

Query: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEI+DELAE
Sbjct: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELKKKCPVNVFDIEDIA GKKRATVARPRACTLCRECIRGD WEKRVALRRVKDHFIFKI
Sbjct: 301 ELKKKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDVWEKRVALRRVKDHFIFKI 360

Query: 361 ESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           ESTGALPP+VLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 390

[Close]

BLAST of Lsi05G005020 vs. NCBI nr
Match: KAG6596753.1 (DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 736.1 bits (1899), Expect = 1.6e-208
Identity = 361/391 (92.33%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 282 MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 341

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 342 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 401

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 402 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 461

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 462 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 521

Query: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 522 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 581

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 582 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 641

Query: 361 ESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           ESTGALPP+VLFTEAVKILEDKCERLIAELS
Sbjct: 642 ESTGALPPEVLFTEAVKILEDKCERLIAELS 672

[Close]

BLAST of Lsi05G005020 vs. NCBI nr
Match: XP_022936430.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936440.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_022936448.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata])

HSP 1 Score: 736.1 bits (1899), Expect = 1.6e-208
Identity = 361/391 (92.33%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           ESTGALPP+VLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Lsi05G005020 vs. NCBI nr
Match: XP_023540473.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo] >XP_023540474.1 DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 735.3 bits (1897), Expect = 2.7e-208
Identity = 361/391 (92.33%), Postives = 378/391 (96.68%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSGKDK+LHNMSES+SE E VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGKDKNLHNMSESDSEHEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TSKALTWLPNGSEFPLVSDKSVSN+KPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           ESTGALPP+VLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Lsi05G005020 vs. NCBI nr
Match: XP_023005438.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima])

HSP 1 Score: 733.4 bits (1892), Expect = 1.0e-207
Identity = 360/391 (92.07%), Postives = 379/391 (96.93%), Query Frame = 0


Query: 1   MSGKDKSLHNMSESESEQEGVGKEGIEWIMNLSDVPMKLPPHLELQRTRVECKADAPIHT 60
           MSG+DK+LH+MSES+SEQE VGKEGIEWIMNL DVPMKLPPH+ELQRTRVECKADAPIHT
Sbjct: 1   MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60

Query: 61  DTIQYSGAFASMGVDNSLRLDYFRNNFKVEVIDLREDDIEFDMIGIDPSLANAFRRILIA 120
           DTIQYSGA+AS+G+DNSLRLD FR NFK+EVIDL+EDD+EFDMIGIDPSLANAFRRILIA
Sbjct: 61  DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120

Query: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIHVDPRLFEYSDRDTPNEKNTVVFRLHA 180
           EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPI VDPRLFEYSD+DTPNEKNT+VFRLH 
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180

Query: 181 RCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
           RCERGK RLT TS+ALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEF+NNPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240

Query: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
           PKD DIILARL  GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300

Query: 301 ELKKKCPVNVFDIEDIADGKKRATVARPRACTLCRECIRGDAWEKRVALRRVKDHFIFKI 360
           ELK KCPVNVFDIEDIA+GKKRATVARPRACTLCRECIRG+AWEKRV+LRRVKDHFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360

Query: 361 ESTGALPPQVLFTEAVKILEDKCERLIAELS 392
           ESTGALPP+VLFTEAVKILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391

[Close]

BLAST of Lsi05G005020 vs. TAIR 10
Match: AT1G60620.1 (RNA polymerase I subunit 43 )

HSP 1 Score: 501.1 bits (1289), Expect = 7.9e-142
Identity = 251/365 (68.77%), Postives = 295/365 (80.82%), Query Frame = 0


Query: 29  IMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAFASMGVDNSLRLDYFRNNFK 88
           I +L DVP  LPPHLELQRTRV CK D+ IH   I +SGA++SMGVDNS+RL+ F  +FK
Sbjct: 23  IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82

Query: 89  VEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRL 148
           V+VI L E D+ FDMIG+   +ANAFRRIL+AE+P+MAIEKV VANNTS++QDEVLAHRL
Sbjct: 83  VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142

Query: 149 GLIPIHVDPRLFEY-SDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFPL 208
           GLIPI  DPRLFEY S+ D PNEKNT+VF+LH +C +G  R  V +  L WLPNGSE  L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202

Query: 209 VSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKGM 268
           + +   S + PKTYTSF+ SQD+ PEF+ NPI P   DI++A+LGPGQEIELEAHAVKG+
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGI 262

Query: 269 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVAR 328
           GKTHAKWSPVATAWYRMLPEVVLL+E E + AEEL K CP  VFDIED+  G+KRATVAR
Sbjct: 263 GKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVAR 322

Query: 329 PRACTLCRECIR-GDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERL 388
           PR C+LCRECIR G  WE +V LRRVK+HFIF IESTG+ PP+VLF EAVKILEDKCER+
Sbjct: 323 PRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERV 382

Query: 389 IAELS 392
           I+ELS
Sbjct: 383 ISELS 385

[Close]

BLAST of Lsi05G005020 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 467.6 bits (1202), Expect = 9.7e-132
Identity = 236/360 (65.56%), Postives = 282/360 (78.33%), Query Frame = 0


Query: 29  IMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 88
           I +L DVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 148
           KV+V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIHVDPRLFEY-SDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNT+VF+LH +C + + RL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 268
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI++A+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 269 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVA 328
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L   CP NVFDIED+  GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 329 RPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERL 387
           +PR CTLC+EC+R D     V L  VK+HFIF IESTG+LPP+VLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of Lsi05G005020 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 467.6 bits (1202), Expect = 9.7e-132
Identity = 236/360 (65.56%), Postives = 282/360 (78.33%), Query Frame = 0


Query: 29  IMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 88
           I +L DVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 148
           KV+V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIHVDPRLFEY-SDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNT+VF+LH +C + + RL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 268
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI++A+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 269 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKKKCPVNVFDIEDIADGKKRATVA 328
           +GKTHAKWSPV TAWYRM PEVVL  E+EDELAE L   CP NVFDIED+  GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314

Query: 329 RPRACTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPQVLFTEAVKILEDKCERL 387
           +PR CTLC+EC+R D     V L  VK+HFIF IESTG+LPP+VLFTEAVKILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372

[Close]

BLAST of Lsi05G005020 vs. TAIR 10
Match: AT1G60850.3 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 336.3 bits (861), Expect = 3.4e-92
Identity = 169/262 (64.50%), Postives = 206/262 (78.63%), Query Frame = 0


Query: 29  IMNLSDVPMKLPPHLELQRTRVECKADAPIHTDTIQYSGAF-ASMGVDNSLRLDYFRNNF 88
           I +L DVP  LPPHL+ Q+TRV  K +AP HT +  YSG + +S   D++++L  F +NF
Sbjct: 15  IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74

Query: 89  KVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 148
           KV+V+ L + D+EFDMIGID + ANAFRRILIAEVP+MAIEKVL+A NTS++ DEVLAHR
Sbjct: 75  KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134

Query: 149 LGLIPIHVDPRLFEY-SDRDTPNEKNTVVFRLHARCERGKQRLTVTSKALTWLPNGSEFP 208
           +GLIPI  DPRLFEY S+ D  NEKNT+VF+LH +C + + RL V +  L WLPNGSE  
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194

Query: 209 LVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIELEAHAVKG 268
           L+ +     SKPKTYTSFSCSQD+LPEF+NNPI P D DI++A+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254

Query: 269 MGKTHAKWSPVATAWYRMLPEV 289
           +GKTHAKWSPV TAWYRM PEV
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEV 274

[Close]

BLAST of Lsi05G005020 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 143.7 bits (361), Expect = 3.2e-34
Identity = 103/312 (33.01%), Postives = 164/312 (52.56%), Query Frame = 0


Query: 88  KVEVIDLREDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHR 147
           K+++ +L++D  +F++   D S+ANA RR++I+EVPT+AI+ V +  N+S++ DE +AHR
Sbjct: 11  KIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70

Query: 148 LGLIPIHVD-------PRLFEYSDRDTPNEKNTVVFRLHARCERGKQRLTVTSKAL-TWL 207
           LGLIP+  +        R  +  D D   E  +V FRL ++C    Q L VTS+ L +  
Sbjct: 71  LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVT-DQTLDVTSRDLYSAD 130

Query: 208 PNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIGPKDSDIILARLGPGQEIEL 267
           P  +      D SVS+S                         +   II+ +L  GQE++L
Sbjct: 131 PTVTPVDFTIDSSVSDSS------------------------EHKGIIIVKLRRGQELKL 190

Query: 268 EAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELK----KKCPVNVFDIED 327
            A A KG+GK HAKWSP AT  +   P++++ E++ D L++E K    +  P  VF ++ 
Sbjct: 191 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDP 250

Query: 328 IADGKKRATVARPRACTLCRECI-RGDAWEK--RVALRRVKDHFIFKIESTGALPPQVLF 385
           +    ++  V  P A T   E I + +A  K   + +    D FIF +ESTGA+    L 
Sbjct: 251 VT---RQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLV 294

The following BLAST results are available for this feature:

BLAST of Lsi05G005020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L22	1.6e-78	46.01	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO...	[more]
O15160	1.3e-77	45.18	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=...	[more]
P52432	5.6e-76	47.14	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN...	[more]
Q54SN4	1.4e-71	42.33	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum...	[more]
O94616	8.1e-67	39.72	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb...	[more]

BLAST of Lsi05G005020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDA3	7.6e-209	92.33	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1L269	4.9e-208	92.07	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661...	[more]
A0A0A0L637	3.5e-206	92.86	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 ...	[more]
A0A6J1DXI7	1.4e-202	92.39	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3...	[more]
A0A1S4DX61	9.0e-202	91.07	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of Lsi05G005020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903474.1	1.7e-215	96.42	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispi...	[more]
KAG6596753.1	1.6e-208	92.33	DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyros...	[more]
XP_022936430.1	1.6e-208	92.33	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita moschata] >XP_02...	[more]
XP_023540473.1	2.7e-208	92.33	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita pepo subsp. pepo...	[more]
XP_023005438.1	1.0e-207	92.07	DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita maxima]	[more]

BLAST of Lsi05G005020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60620.1	7.9e-142	68.77	RNA polymerase I subunit 43	[more]
AT1G60850.2	9.7e-132	65.56	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	9.7e-132	65.56	DNA-directed RNA polymerase family protein	[more]
AT1G60850.3	3.4e-92	64.50	DNA-directed RNA polymerase family protein	[more]
AT2G15430.1	3.2e-34	33.01	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 98..389 e-value: 2.3E-110 score: 382.6
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 100..383 e-value: 4.9E-26 score: 91.2
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 89..382 e-value: 2.4E-106 score: 357.2
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 85..390
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 131..275 e-value: 6.8E-23 score: 81.2
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 124..272 e-value: 2.4E-106 score: 357.2
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 123..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 25..391
None	No IPR available	PANTHER	PTHR11800:SF14	BNAA01G22480D PROTEIN	coord: 25..391
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 112..152
IPR033901	DNA-directed RNA polymerases I and III subunit AC40	CDD	cd07032	RNAP_I_II_AC40	coord: 87..389 e-value: 4.40835E-145 score: 411.602

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G005020.1	Lsi05G005020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity