Lsi05G004860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G004860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	GBBH-like_N domain-containing protein
Location	chr05: 6161463 .. 6166263 (-)
RNA-Seq Expression	Lsi05G004860
Synteny	Lsi05G004860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATATCTTACTTAATTTTTCTTTTTACAAAATTTAATCTTTTTTAAAATTTAAAAATAAGATAAATAACTCGATACCTATTTGGATAATTGGTAAATTTATTTGAAAGTTTGGAAATTCATATTAGTGTGGAAATAGAAATTCGCTAAAGATTTTGAAAAATATTGAGAGTGCTATTTCTGACCATTTTCTTTCTGATTAATCGGCCATAGAAAACGGAGGTGGAAGCAACAGCGACGGTAGAGGAAGGGAAGGAGTGCACATTCAGAGAAATCATGTTAGCTTTGCGTAGAGTTTTCCGGACGATCCATACCACCATCGATGCTCCTCAAGTTACCACTTTCGCTCTTCACGCCCCCAAATATGTAAGCTTTTTCCCCACTAATCTTCCTTCAATTTTCCTACTCATTTCAATTATTGCCTTTTCATTTCTGGGTTTTTGTTTCTGATTTGAATCATAACTCCCCATTTTATTTCGTCTTTCTGGAATCCTTCATCGCAATTTGGGGTCGCTAATATCAATTGCTCCTGCTTACTTATCTGCAAAACTCCATCGTGTTAAGGAAAGGGTATTGATAACTGGCCTTCTTCTTGGCAGGTCATTATCCTAATAAGTTTATGTACTACGAAATTGATTGCCCATTTCTTCCTTTTGCAAATGGGTTTTCAAATTTAGGATAACCCCATTTCATTAAGAAATCAGAGCCACGAATTGGATGGTCTCAATGTTACAAGTTCTGTTTTTTCTTCATTATTTTAGTGGATGTGTTACAGGCTTTGTGGCTAATTTCAATGCAGTTTCAATGATTGAGATTGGATACGTACTGGGTTACTACTTGTAGACTTCTTATTATTACTTTTTTTTATAAAAAAAATTAGGAAACAGAATCACTTCATTGATAAATTGGAATTGCAAAATGATGAAATCTAATCCAATGGATTACAGGAAAACTATTCTGATGGGCAATATGGATTGATAAGTTGTAATTACAAAAGGGGGCCTGCCCAATTTACACAAGTTAATGATAGATAAGTAATTGACGAGAGAAGAGATTGAGGTTCTTGTTCTTTGTCAGTGACGATCCAAGAGTTTCTTTTCAGCCATATAGACCACAAGAAGTCTGAATGAAGTTAAGACGAAGGATTGTCTTTTCTTTCTTGAATGGATACCCAATGAACATGACTGAGAGAAGATCCCAAATTTCATTAGGGAAGTAGGCGGTCGCCAACGAAAAGCCCCTAGGATGTGTTCCCAAAAAAATCTAGCCTCTTTGCACTTAACTGTGTTTCCTTATCATTTTTGCAAAGAATGTAGCAACTAGGAGAGATATTAATCCATGGAGATCTTCTTTCCAGCTTGTCGTGAGTATTAAGGCATGAGTACTTTAGTTCCCATAGGAAAAACTTCACCTTTTAAAGAAACTTTCCTTTCCAAATGGAAAGATATAGGTTTTTTTTACCATGATCACCAGCTGAGGATAATAACTTGGAGAGGGATTTTGATGACAAAGCCGCATCCTTTTCTAAATTCCAAGACCAAAAATTGTTAGCATCATTGAGATTTGAAAACAACGGCTGCAAGTGCATCAGATAGGCTAGCCCATTCCTCTATTTCCCTACCTGTTGGGTTTTTTCTTGGCCAAAAATTTAAAGAATCTTATGGATTTTTTTTTTTTTTAAGCCGGTGGATTATTCCATAAATTAGCCACTAATGCTTCTTTCTTCTGTGTGAAAACATAGAGGCAAAATTGTTTTTTACGGCCTTATTTTCCAACGAAATATCAGACTAAATTGGTTGATGTGGTTGTCCCCCACTGGTCAAAATGGCAGGCGCCATATTTGAAGGCAATCAACTTCCTCCAAAGGGCAGATATTTCCTTATGAAATCTCCAAATCCACTAAGCCAACAAGGAAATATTTTTCTGTTCTAGATTTGTAATCCTCCTTTTAGCACTTCAATTCTTTAGTTCATTGCATTTGCTTCTTATTTTTATTGGTTGTATCTTTACCTGTGTTTTGGGCATCTTTTGATATTTGGTGTACTCTCCATCATCAATGAAAATTTTCTTATCCAAAAAAAAAAAATAAAATTTCCCATTCAAGATTGTGTGTACGTTCCTTCTCTTTGTTGCCCTTCCACACAGGAAGTTTCGAAATAGCCTCCCAATGGATGCTGAAATCTTTGTGGGTGTGCGAAAAAGAGAAATAATGTATACGTAGGTATGCCAAAGTTTCTTGAATAAGAGCAATGTGACCCCCTTTAGAAATGTGTGAGTGTCCCCAAGAATTAGACTGGGTCCATGGGGACAAAGCGTGATTTTCAGAGCCTGTAGAGGTGTGGAAACAGATTGATGCATGTGGCAGAGAGGGGGATGTTTGCTAGGAATGGTGGGAAGTGCACGTAGCTTGGTAAGAGTGTTAGGTGGTGGTTTGATTGGCTTTCATGGTTGCATACCTCTATGGTGCAGTTTTGATGGAGCTGGGGTGGGTGGGTATAGCTAGTTGGGTTTGGGCGAGTGGTCAAGGGAAGGGCACTTCTTTGGGCGTGCAAATGTGTTCGAACTCCACTAGATTTGTGGTATTTTGCCATGAATTCCAACAATATAACCAATGAAAGGGTCTGCTTCAAAAAATGGGTTGATTTGTACTGCTAAAGGGGGAAGTAGAAGACGATGGGAGGTGGAGTCTCACAACGATCAAGCCATATGTGTTCTCTTGTAGACTTTGAAATTTTGATGAGGCTCCGTCATAAAATTTGTTGAAAATGGATATACATTATATTTTTAGGTACTTATTTGTAGATAAGCTCTGCAACGATCATCACAATTTGGTCAGGAGCATAACTTACTGTAGAAGTTGATTTTGCTGGATGCTGTCATGTGCTATTAGTATTCAGCTTGTGAATATGGTTTTGTCTTTTTCACATACACTGTTTACTATGTTGCAGTTCACTAAATGTTTCCCTTTCAGGTAGAGGTTAAATTTGCAGATGGAAGTGTGTTCAACTTGTCAGCTGAATTCTTGAGAGTATATAGTCCAGCTGCTGATGCTAAAATCCGGACAATTGGTGGTGAAAAGGTACTATAGAAACAAGGCTTTTTTTTCATATATAGCCAACTTATTTACAAATATAGCAAAATGGCAAAAAGTTTCCATTTTGTCATTTTATCATTTTGTTATATTTGTAAATATTTCTAGCGGTTTTGTCATTATGAGTGATACTTTTAAATGAAACACTCCCTTTTAATATTTGTGGCTTCCGCTTTGATTAATTTTACAGGACAACAATATAATTCAACAACATTTAGTTTCTAAGAAAACTAGATAGATGGCTACTATGTTTTGGACTAATTCTCTTTGAACCCTTTACATTTTACATTAGTCTCGTCGACCACTAAGCCAACCCATGAGACACTGCTTTTATAAATACTTTTGCAAAATACTTCAACTTTTCACCATTCTGAAAGTCATACCGTAGCCCAATACATCCTACAACTTTTATAGCATTAATTATTGTAATGTCAAACTAATCTCATAAAGTTTATCTATATAAATTGGTTCAAACATCCACCCCTATCCTAAAAACCTTTTAGTTTAGTACTGAGTGTAAACAATTTCACTGAGTGTAAGATATTCAAACTCAATTGGTTTTTTTTCTCTTGATATTCGTGAGTGTCCAGTCCAGCTTACGCGTACCTCGACTAATCTCATGAGATAACCTGCCTTACCATACAACATTTGAGAAACTCGTAGGATATTAAATCCTAGGTAGGTAGCCACTGTGGATTAAACCTATGACTTCATAGCTCTTTATTAAGGTTATATCTCCTATTTACTACTAGACCAACTTATGATGGTTTTCAGACTCAATTGGTTTATAGAGATAGCATTAGCCATGTTCTAGAATTATGTGTCTGGAGTCTAATATAAGGGCTGCACAATGGTTGGCCAAACTGCTCATTTTGTACGATTCAATGTTTAGCCACATTCTCACAAGTCACAACCCAATGCTTCTACTGATTTATCAATATCATCTAGAGTTTTTACTGCTTTTTCTGTTATCAGATTCAATTACTAAATGCATATTTCAAACCAGGTAATTTCTGGACGACGTCATGTCGGTATCATGTCTGCCGAACCAGTTGGGAACTATGGGGTAAGGTACTTTGAAATTATTTGTTAATATGCGTGTTTCTGAATTTTACCAATCTTTTGATATTGACTCGCGGAAGAATTGAAATTTTACATCAAAACATAAAGTATGGATGATATGAACTGCCTTTACAAGAATCTAAATATATTTGCTGCAATTTGGTAGGATCTTTTTTGATGATTTGCATAGAACTGGGATTTATTCGTGGGATTATTTCTATCATCTCGGGAGCAACAAATTTACACTCTTGAGAAATTATATTAAAACACTAAAGAAGCATGGGCTGAGCCGAGATCCACCAAAGAGAAAATGATGGACAAATCAACTGTCTTCGGCCACGAGCATCGTAAGTTAGATAATCATGAGTGTTCGGGTCAACTGACAACCCCCTTAGCGAATCATGCAACAATTAGATGGGATTTGTTGCTATTTAGCAGGGACCAGGGAGATAAAAGAAGACAAGTTGTCTCAGCACTGGCTGATGAAAAAGTTTCAATCGTTGTACTATGCAACAGAAACGATTTTCCAAGTCTTTTGTTTCAAATCTTACCTATCAGCTATATGCATCTAATGACCTTTTAGGCTGTGAAGCAAGAACCTGAGCGTGGAAATAGACATGTTGCTGTAGCTCCTTGCAAGATTATCTAA

mRNA sequence

TTATATCTTACTTAATTTTTCTTTTTACAAAATTTAATCTTTTTTAAAATTTAAAAATAAGATAAATAACTCGATACCTATTTGGATAATTGGTAAATTTATTTGAAAGTTTGGAAATTCATATTAGTGTGGAAATAGAAATTCGCTAAAGATTTTGAAAAATATTGAGAGTGCTATTTCTGACCATTTTCTTTCTGATTAATCGGCCATAGAAAACGGAGGTGGAAGCAACAGCGACGGTAGAGGAAGGGAAGGAGTGCACATTCAGAGAAATCATGTTAGCTTTGCGTAGAGTTTTCCGGACGATCCATACCACCATCGATGCTCCTCAAGTTACCACTTTCGCTCTTCACGCCCCCAAATATCAACTAGGAGAGATATTAATCCATGGAGATCTTCTTTCCAGCTTGTCGAAGTTTCGAAATAGCCTCCCAATGGATGCTGAAATCTTTGTGGTTTTGATGGAGCTGGGGTGGGTGGGTATAGCTAGTTGGGTTTGGGCGAGTGGTCAAGGGAAGGGCACTTCTTTGGGCGTGCAAATGTGTTCGAACTCCACTAGATTTGTGGTAATTTCTGGACGACGTCATGTCGGTATCATGTCTGCCGAACCAGTTGGGAACTATGGGGTAAGGGACCAGGGAGATAAAAGAAGACAAGTTGTCTCAGCACTGGCTGATGAAAAAGTTTCAATCGTTGCTGTGAAGCAAGAACCTGAGCGTGGAAATAGACATGTTGCTGTAGCTCCTTGCAAGATTATCTAA

Coding sequence (CDS)

ATGTTAGCTTTGCGTAGAGTTTTCCGGACGATCCATACCACCATCGATGCTCCTCAAGTTACCACTTTCGCTCTTCACGCCCCCAAATATCAACTAGGAGAGATATTAATCCATGGAGATCTTCTTTCCAGCTTGTCGAAGTTTCGAAATAGCCTCCCAATGGATGCTGAAATCTTTGTGGTTTTGATGGAGCTGGGGTGGGTGGGTATAGCTAGTTGGGTTTGGGCGAGTGGTCAAGGGAAGGGCACTTCTTTGGGCGTGCAAATGTGTTCGAACTCCACTAGATTTGTGGTAATTTCTGGACGACGTCATGTCGGTATCATGTCTGCCGAACCAGTTGGGAACTATGGGGTAAGGGACCAGGGAGATAAAAGAAGACAAGTTGTCTCAGCACTGGCTGATGAAAAAGTTTCAATCGTTGCTGTGAAGCAAGAACCTGAGCGTGGAAATAGACATGTTGCTGTAGCTCCTTGCAAGATTATCTAA

Protein sequence

MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFVVLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVRDQGDKRRQVVSALADEKVSIVAVKQEPERGNRHVAVAPCKII

Homology

[Close]

BLAST of Lsi05G004860 vs. ExPASy TrEMBL
Match: A0A6J1F9C8 (uncharacterized protein LOC111442002 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442002 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.3e-12
Identity = 57/119 (47.90%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           MLAL+R FRTIHTT+DAPQVT+FAL APKY   E+           KF      D  +F 
Sbjct: 1   MLALQRAFRTIHTTVDAPQVTSFALRAPKYV--EV-----------KF-----ADGSVFN 60

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVR 120
           +  E  ++ + S    +   K  S+G +         VISGRRHVGIMSAEPVGNYGVR
Sbjct: 61  LSAE--FLRVYS---PAADAKVRSIGGEK--------VISGRRHVGIMSAEPVGNYGVR 88

[Close]

BLAST of Lsi05G004860 vs. ExPASy TrEMBL
Match: A0A6J1J9C4 (uncharacterized protein LOC111482460 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482460 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-11
Identity = 55/119 (46.22%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           MLAL R FRTIHTT+D+PQ+T+FAL APKY   E+           KF      D  +F 
Sbjct: 1   MLALHRAFRTIHTTVDSPQITSFALRAPKYV--EV-----------KF-----ADGSVFN 60

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVR 120
           +  E  ++ + S    +   K  S+G +         VISGRRHVGIMSAEPVGNYGVR
Sbjct: 61  LSAE--FLRVYS---PAADAKVRSIGGEK--------VISGRRHVGIMSAEPVGNYGVR 88

[Close]

BLAST of Lsi05G004860 vs. ExPASy TrEMBL
Match: A0A1S3BNF3 (uncharacterized protein LOC103491759 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491759 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-11
Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           ML L R+FRTIHTT++APQ+TTFALHAPKY   E+           KF      D  +F 
Sbjct: 23  MLPLNRLFRTIHTTLNAPQITTFALHAPKYV--EV-----------KF-----ADGSVFN 82

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVR 120
           +  E  ++ I S    +   K  S+G +         VI GRRHVGIMSAEPVGNYGVR
Sbjct: 83  LSAE--FLRIYS---PAADAKVRSIGGEK--------VIFGRRHVGIMSAEPVGNYGVR 110

[Close]

BLAST of Lsi05G004860 vs. ExPASy TrEMBL
Match: A0A6J1F4E2 (uncharacterized protein LOC111442002 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442002 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-10
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           MLAL+R FRTIHTT+DAPQVT+FAL APKY   E+           KF      D  +F 
Sbjct: 1   MLALQRAFRTIHTTVDAPQVTSFALRAPKYV--EV-----------KF-----ADGSVFN 60

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYG 118
           +  E  ++ + S    +   K  S+G +         VISGRRHVGIMSAEPVGNYG
Sbjct: 61  LSAE--FLRVYS---PAADAKVRSIGGEK--------VISGRRHVGIMSAEPVGNYG 86

[Close]

BLAST of Lsi05G004860 vs. ExPASy TrEMBL
Match: A0A6J1J985 (uncharacterized protein LOC111482460 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482460 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.9e-10
Identity = 53/117 (45.30%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           MLAL R FRTIHTT+D+PQ+T+FAL APKY   E+           KF      D  +F 
Sbjct: 1   MLALHRAFRTIHTTVDSPQITSFALRAPKYV--EV-----------KF-----ADGSVFN 60

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYG 118
           +  E  ++ + S    +   K  S+G +         VISGRRHVGIMSAEPVGNYG
Sbjct: 61  LSAE--FLRVYS---PAADAKVRSIGGEK--------VISGRRHVGIMSAEPVGNYG 86

[Close]

BLAST of Lsi05G004860 vs. NCBI nr
Match: XP_031737737.1 (uncharacterized protein LOC101219823 isoform X1 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-12
Identity = 57/119 (47.90%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           ML L R+FRTIHTT+DAPQ+TTFALHAPKY   E+           KF      D  +F 
Sbjct: 68  MLPLHRLFRTIHTTLDAPQITTFALHAPKYV--EV-----------KF-----ADGSVFN 127

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVR 120
           +  E  ++ + S    +   K  S+G +         VISGRRHVGIMSAEPVGNYGVR
Sbjct: 128 LSAE--FLRVYS---PAADAKIRSIGGEK--------VISGRRHVGIMSAEPVGNYGVR 155

[Close]

BLAST of Lsi05G004860 vs. NCBI nr
Match: XP_022935010.1 (uncharacterized protein LOC111442002 isoform X1 [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-11
Identity = 57/119 (47.90%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           MLAL+R FRTIHTT+DAPQVT+FAL APKY   E+           KF      D  +F 
Sbjct: 1   MLALQRAFRTIHTTVDAPQVTSFALRAPKYV--EV-----------KF-----ADGSVFN 60

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVR 120
           +  E  ++ + S    +   K  S+G +         VISGRRHVGIMSAEPVGNYGVR
Sbjct: 61  LSAE--FLRVYS---PAADAKVRSIGGEK--------VISGRRHVGIMSAEPVGNYGVR 88

[Close]

BLAST of Lsi05G004860 vs. NCBI nr
Match: XP_038891561.1 (uncharacterized protein LOC120080945 isoform X1 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-11
Identity = 58/119 (48.74%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           MLAL+RVFRTIHTTIDAPQ+TTFAL APKY   E+           KF      D  +F 
Sbjct: 1   MLALQRVFRTIHTTIDAPQITTFALRAPKYV--EV-----------KF-----ADGSVFN 60

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVR 120
           +  E  ++ + S    +   K  S+G +         VISGRRHV IMSAEPVGNYGVR
Sbjct: 61  LSAE--FLRVYS---PAADAKVRSMGGEK--------VISGRRHVCIMSAEPVGNYGVR 88

[Close]

BLAST of Lsi05G004860 vs. NCBI nr
Match: XP_022984013.1 (uncharacterized protein LOC111482460 isoform X1 [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-11
Identity = 55/119 (46.22%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           MLAL R FRTIHTT+D+PQ+T+FAL APKY   E+           KF      D  +F 
Sbjct: 1   MLALHRAFRTIHTTVDSPQITSFALRAPKYV--EV-----------KF-----ADGSVFN 60

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVR 120
           +  E  ++ + S    +   K  S+G +         VISGRRHVGIMSAEPVGNYGVR
Sbjct: 61  LSAE--FLRVYS---PAADAKVRSIGGEK--------VISGRRHVGIMSAEPVGNYGVR 88

[Close]

BLAST of Lsi05G004860 vs. NCBI nr
Match: XP_008450051.1 (PREDICTED: uncharacterized protein LOC103491759 isoform X1 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 7.3e-11
Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 0


Query: 1   MLALRRVFRTIHTTIDAPQVTTFALHAPKYQLGEILIHGDLLSSLSKFRNSLPMDAEIFV 60
           ML L R+FRTIHTT++APQ+TTFALHAPKY   E+           KF      D  +F 
Sbjct: 23  MLPLNRLFRTIHTTLNAPQITTFALHAPKYV--EV-----------KF-----ADGSVFN 82

Query: 61  VLMELGWVGIASWVWASGQGKGTSLGVQMCSNSTRFVVISGRRHVGIMSAEPVGNYGVR 120
           +  E  ++ I S    +   K  S+G +         VI GRRHVGIMSAEPVGNYGVR
Sbjct: 83  LSAE--FLRIYS---PAADAKVRSIGGEK--------VIFGRRHVGIMSAEPVGNYGVR 110

[Close]

BLAST of Lsi05G004860 vs. TAIR 10
Match: AT3G27340.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 693 Blast hits to 693 proteins in 282 species: Archae - 0; Bacteria - 530; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 2.2e-05
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 98  VISGRRHVGIMSAEPVGNYGVRDQ 122
           VISGRR+VGIMSAEPVGNYGVR Q
Sbjct: 70  VISGRRYVGIMSAEPVGNYGVRIQ 93

[Close]

BLAST of Lsi05G004860 vs. TAIR 10
Match: AT3G27340.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 1035 Blast hits to 1035 proteins in 399 species: Archae - 0; Bacteria - 765; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 3.7e-05
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 98  VISGRRHVGIMSAEPVGNYGVR 120
           VISGRR+VGIMSAEPVGNYGVR
Sbjct: 70  VISGRRYVGIMSAEPVGNYGVR 91

[Close]

BLAST of Lsi05G004860 vs. TAIR 10
Match: AT3G27340.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 945 Blast hits to 945 proteins in 390 species: Archae - 0; Bacteria - 710; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 3.7e-05
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 98  VISGRRHVGIMSAEPVGNYGVR 120
           VISGRR+VGIMSAEPVGNYGVR
Sbjct: 70  VISGRRYVGIMSAEPVGNYGVR 91

The following BLAST results are available for this feature:

BLAST of Lsi05G004860 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G004860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9C8	9.3e-12	47.90	uncharacterized protein LOC111442002 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J9C4	3.5e-11	46.22	uncharacterized protein LOC111482460 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3BNF3	3.5e-11	47.06	uncharacterized protein LOC103491759 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1F4E2	1.0e-10	47.01	uncharacterized protein LOC111442002 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J985	3.9e-10	45.30	uncharacterized protein LOC111482460 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi05G004860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737737.1	6.6e-12	47.90	uncharacterized protein LOC101219823 isoform X1 [Cucumis sativus]	[more]
XP_022935010.1	1.9e-11	47.90	uncharacterized protein LOC111442002 isoform X1 [Cucurbita moschata]	[more]
XP_038891561.1	2.5e-11	48.74	uncharacterized protein LOC120080945 isoform X1 [Benincasa hispida]	[more]
XP_022984013.1	7.3e-11	46.22	uncharacterized protein LOC111482460 isoform X1 [Cucurbita maxima]	[more]
XP_008450051.1	7.3e-11	47.06	PREDICTED: uncharacterized protein LOC103491759 isoform X1 [Cucumis melo]	[more]

BLAST of Lsi05G004860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27340.2	2.2e-05	91.67	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPR...	[more]
AT3G27340.1	3.7e-05	95.45	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPR...	[more]
AT3G27340.3	3.7e-05	95.45	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPR...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G004860.1	Lsi05G004860.1	mRNA