Lsi05G004720 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G004720
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cystinosin homolog
Location	chr05: 5977692 .. 5993913 (-)
RNA-Seq Expression	Lsi05G004720
Synteny	Lsi05G004720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCCAGTTCCCAGAGGCATCACAGTCTCTGCTCTGAGATCATCTTCTGAATTAAGGTGAGAAGAGCGAGAGAGAGAGAAATGGGTTCATGGAATTCAATTCCAATGGAGATCATATATGAGGTATTAGGATGGATTTCCATTATATGCTGGGCGGTTGCCGGATATCCACAGCTCTTTCTGAATTTCCGGCGAAAAAGGTAAGAAATATTCCAACTGATCTGAATAATCGTCGATCTTCGGCACCGGCGGCGTTGGGGATCTTCGTCAATCAAAGAGAAGTGATGTTAAGATTTTTGTATTTGGCAGTGTTGTAGGATTAAGCTTCGATTATGTGGTTCTGAATTTCACGAAGCAATCGTCGTATTTGATATACAACGCTACTCTGTTCTTCAGCTCCACTGTTCAGAGGCAGTACTTCGACAAATACGGCTACGATCAGGTTAATTTTCTGTTTACCCAAATTTATTGCTTCAGCTTATTGAAACTCAGCTAAGTTTTTTTTTTTTTTTCTTTTTTTTTTTTAAGAATTTTAAATTATAAAAAAAATGTTTGATAATTGTTTCTTTTTACTTTATTTTAATATAATAAAATAGGACAAATTGAAAAAATTACTCCTAAAGTAGATGGTTAGTTTCAATTACACCTCCCTTCAAAAAAAAAAAAAAAATTATACTCTTTCAAATTTTAAGTGGAGGACCCCATGTAATGAAATTATCATTTTATTTTCATTCAAGCGTCTCCAATTTCAGCTTTACCTAACACAACTTTTAATATCCAACTTCATTTTTATAACTTAAACTTCAGTATTCTATTTTTTTTTCTCCATGTTTTTGGCAATTTTCTATCTATTTTTGTGGTAAGTTTGTTGTTATTTTGAAAGGAAAAAACTTGGACAAAAAAGTTTTGTTGGGATTTCTCGTAATTAAAATTTTTTCTGTAAATTTAAATTGTTACATGAAGTTCGTGAGAATTTTTTCTTCAACTCAAAACTAATAATGGTAAATAAAAAATTAAAAAAAACTTAAACTATTCCTTTACTAGAATTCTCCTAAATTAATTGAAATTAGAATTCGTTAAAAAGAAAATAAAACTAACTAAGTTTAGGTAAAAAAAAAATGGAATTGGTTTAAGTTAAAAAAAAATAAACTAACTTAAATTTATGGGGGAAATTGGAATTGAATATGGGTAAAAAAAAAAATTAACGGAAAAAATAGAATTAGCTAAAAATATCTTACTGAAAAATTTCTCAGTAAGAATCTAAAATCGAACCTTCAAACTTATAATTATTGTAAATATTAGACTCCAAATGATAAAAACTGAATTTCAAACTTATATAATTTGTATTTAATGGAAACAATAATAATAATAATAATAATATTTATCCATTAATTATTGGTCAAATTTGATATGAAGTTTCATCTCACTTCAATTAATTCGTGTTGAATAATGTCAGAAATTATGAGTCAATTGGATTTGACTCATTTGTAAATTTCTTTTTTTGAAAAATGCATTTATTTCTCATTAGTCCATCATGCAATTAAATAAAATGTAAAATATTATTTTAATCTTTATATTTTAAATTTTATTTAATTTTAATCTATATAGTGTGAAATATCCAATTTTAATCCTTCTACTTTAAATAAATCTTAAATTTAGCTCCTTAAAATTAAATTTTATCAAATTTAATTAAATATTAATAATAATTTTCATGCAAAAAAAAAATACAATATGTGTATGTTTTCAAAATTTATAGTAAAAATGTTAATAGAAAATTGCTAATAAAAATAAAAAATTTAATGAATTCTACAATAAATTAGTAGTAGAGACTAATGAGGTGTTTGGTTTAACTTTTCAAGTGTTTAATTTTAAAAATAAGTCATTTTAGAATAAATTTGAGTGTTTGGCAACCACTCAAAATAGCTTTTGAAAGACTCTTAAAATTAGAATTTATTGAGAGTACACGAACTAAAATTGAACATTTAAAATTATAGAAATTCTAAAATATAGGAACCAAAATAATATTTTAACTTAAAATATCACAGCGACAATATTTTTTTCTTTGAAAAATAATAGTAAGTATGGAATATCATATTAATTTATTTATTTAATAAAAAGAAATTACGTCCTACCTAACTGATGGAGATGGTATAGACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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GACTCAAATTTATGGTATATTTTAAAACGGTCTCAAATTATCTTTTTTTTTATTATAGATTTTCACCATATTTTGATCCTTTTATGGAGAACCCTCATTTAATTTTTAACAATTTAAGTCATGTTTGATAACTATTTAATTTTTTATTTTTAAAAATTAAATTTATAAATTATAAACATGACTTTCACCTATAAGTTTTTACATGTTGTTATCTATTTTTCACTAATGTTTTAAAACACAAAGTCAAAGCTTTGAAAACTAAAAAAGAATAATTTTCAAAAACTTGTTTTAGTTTTTAAAATTTAACGAGAAATTTAAATATTTCTTTAATAAAAATAAAAATCATCATAAAAAATTGGGAATAAACAAAATATAAATTTTCAAAATAGAAAATGAAAAATGCAATTGTTATCAAACAAAATAGGTGTAATTCTAACTTTAGTGTGCAACAATTTAGTTTCATATATTTTTTAATTTGCGACAATCTTACTCCTATAATCTCATCAAAATTGGGTGTGGATTTTATTATGTAAACACTAAGAACTTGTCGTTGCGATTAAATTTGGTCCCTAATAAGTTTATCAATCAATATACATAACAAATTTTGATCAATTTTGACAATATTTTTTTCAATAAAGATGAAATAGTTACAAAATTTAAAGTATAACGGCTAAACTGTTACGAAATCAAAATCTTATTAGTGCCATTTTTTTTCTAATTCATCGTAGGCATACAATAATATTTTTAAGTTAAATTACCTATTTACTCTTAAGCTTCCAATTTTGTACCTTAGACAAAGGATGAACTATTCAACAATATTTTTAAATCCTCAAGTTTGTTGTATAAATAACTGAAAATTTATCGTCCTTAATTATGTGTCTAATATATCTATTAAATTTGAAATAATGTAGATTTATTAGCCACAAGTGAAAACTCATATATTAATATTTTATATATAAGAAAAAGATAAAATACACAATTATATTTTAAAATATATATAACAACTTGAATAAATAGTATAAATTAAAGAAAAAATACTTTAAATGACAAAGCTGCTAAAAATATTTATAAATATAGTAAAATGTCACAATCAGATATTGATAAACACAAATAAATGTCACCATTTTGATAAAAAAAAATTGATCAAGAATCAAATTTATATTTATATACTATAAATTGATACCAGAATCAAATTTATATTTATATATTATAAAGACTAAGTCGTAACGTAATAAAATTTAGGGGTCTTTTCACAAATAGAAAAAAAAAACAAAAGTAATTACACATATAGAAAAAAAAGTGGAAAATAAAAAAGCATGGGGTGCATTTTCTCTATATGTGTAATTACTTTCGTTTTTTTTTTCTATACACAACAATTTCCCTAAAATTTAACATTTAAATTTTTTTCACTAAATCATTACAAATTGTAAAGTACATGGATTAAATCATCAAGTTAAGTTAAAAACTAAACTCTTATTTTGATGAACTAAACATATTTTTTTAACGAAAATTGAATAGATATTTTTTAGGACCGTTTTCAAATATAGAAAAATGAATCAAACTATTTATAAATAAAGAAAATTTTTACAATCTATCAGTGATAGAGAACTATAGAATTCTATCGCGGTTTATGACTAATAGTTTGATATTTTATCTATTTATAGTCATTTCTCTATTTTTCATGTCAAAATAAAATATTAAGAATATATATCATAAATCAGTCACTAAATACATATAAATACTGAAAAGTTTTGAATGATTGCTGCAGATTATACCGGTGGCTTTGAGCGATGTGTTTTTCCCGTTGCACTCCATTTTATTGATCTTCGTCGTCTCAGTTCAAATTGTATTTTTTGAAGTCAGTGGTTTGTTCTCTTCTCTTGAGGATTTGATTTGGGTAACTCTGTTTGGGCATTCTATTGATTGGATTTGGATTTTGGTGCTGTGCAGCGTGGCAACCAGAAGGTTTCCAAGGCTGCCATCGCCATCTTCGTGTCGGTATGGTTCTTCGCAGCAGCTTGCCTTTTCATAGCTCTCCCAACCCATTCATGGCTTTGGCTCATCTCCATGTTCAAGTAAAACCCATTTCCCCCATCTCTTTAAATCATATTCTAAAGCTTTTTTGGTTGATTCCCTAATAATTCACCATGGATCATTGTCGAATGTGTTGCAGTTCAATTCAAGTTTTTATGACACTCATCAAATGCTCTCCTCAGGTTTGCCTTTCTGTTCTGCCCAGTAGAAATTAGACTCAGTAAACCACACATTTACTTCTCCATTATTGTTTTTTTGCTCTGACTTCTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTCATGATTCAACTTAATATCTATACTAACTTCTTCGATATTGGTACAGTTTCTAGTAGTTATGCATAATTTTGGTAAAGATCAATGGATTGATATATTAAAAACTCTAATTGTGTTCTTGTCTGGTAATGGAAAGGCTGAGTATATGAAAGTAAAATTTACATTTAGTCATCACCCTGGAAAGACATAAAATTAGCATACATTTGAAACCTACAAGAATGTTAAAGGCAATTGCAAAAATCTTCGAAAGAAACATTTATAATGAGTTCCAATCCTTTTTGGATTTGATTCATTGCTATGTGGGTAATGGAAAGGAAACATACTTCTGGGAGGATAAGTGGTTGGAGGATGGACCCCTTCCCCTTTGCTCTATGTTTTCTTGCTTATATCATTTGTTCCCTGTGAAAAATCGTTTCATAGCTGACTTTTTTATTCCCCTCATGGAGCTCTCACTCTTTTGGTCCTTTGGTTTTCTTCATTTGTTATCCGATCAAAAAACAACGGATATCATGGCTCTCTTGTCTTTGATTGGAGAGATTGAATTTAGGGCGTGGAGGAGGGATATTCACTCTTGGAGTTCTAATCCCATTGGGTTTCTCTTGTAGCTCGTTCTTTCAACATCTGTTGAACCCCTCCTCAATATGTGAGTCTATCTTTTCTATTCTATGGAAGGTGAATATTCCAAAGAAGGTTCAAAATTCTTTGTTCGGCAAGTCATCCTAGGGAGAGTTAATACCATAGGTTGTCTTTTGAGAAAGATGTCTTCTTTCGTTGGTCAGTTTCCTACATTCTTTTTCGAAGGGAAAGGAAGATCTTGATCAAATTTTGTGGGTTACGACTATCCTCGGGTGGCTTGGACCTTTATTGTTTCGACGTGTTTGGTTTCAGTTGGTTAGACACATAAGGGTTAAGGAAGATAATCGAGAAGTTCCTTCTTTATCTGCCTTTTCAAGAGAAGAGGAGGGTTTTGTGACAGGTAGGGATTTGTGCTATGTTATGGGATTTGTGGGGTGAGAAGAATAATAAAAAAATTTTATGGTTGGAAAGGGATCGTAGTTGGCCGTCGATGACAAAGACTTTTTGTAATTATTCCTTAGGTCTCATCTTACTTGATTGGAGCCTCTTCCTTTTAAGTTGACTTTGTTTCTTGTATGCCCTTGTATTCTTTCATTTATTCTCAATGAAAACTTGGTACTTTATTGTATATATATACTCCAAACGTAGAGCTGTAAATTTTTTTTAGAGTAAAGTGAACTCGTGCATACGTATGCTGTTGATTGATATAAATTTGCAAAAAATGGACAAAGAAGCTTGCATTTCATGAAGTCCCTATTGTTTACATACAGGCATTTTTGAACTTCTCCCGAAAAAGTACAGTTGGATTCAGCATTGATCCTACACTCCTTGACCTCACTGGAGGAGTGGCAACTTTAGTTCAAATGAGCGTGCAGTCAATTGACCAAGGTCATCTAATACTTCTGTTTTAATTTATATCTAAGGTTAGCTTGGTATTGAGAGCCATACATTACTTCAACCGTACAATTTTTTTTTCAAAAGAAAAAAAAAAGGTGAAAAGTTCATATTTAAATTGTATAACAAATTAATTTATTATGAGATAAATGCAAGATACACCAAGCATATGATTCTGATTTAGTTGTTCGTCCCAAGGTTAGGATGAATTTACAAGAATATATTTTGATTTTTGTAGGCCTTCCCATTATATGCAACATTCATGCTTAGCTTTATATTTTTGTAAATTGTACCATGGGTAAAAAATTTAGGTTAAAAAAACACTTTTGGTCGGATACTTTCATAGTATAAGATAAAATGATTTAGTCCTTGAAGTTTAGCATATAACAATATAGTTTCTATAGTTTAAATTTTGTAATGATTTAGACCCTAATAACGATTTCATTTATAAGTTTTCACTTTTGAAGTTTATGCTTGTTTTCTCCTAATTTCATTTATAAGTTTTTTAAAACCAAAAACTAAAAACGAAATAGTTACCAAACAGAGCCTAAATGGTTATCAAATGGGACCTTAGTTTTTAAATTTTTGCTTGTATTGATTTAGTTGGTTAAGATTTCATAATGATTCAATCCTTGAAGTATTGATCTCTTACTATTTATCAATATACATGCATAAGAAACCATTCATTGCACCTTTACGAGATTTTTCATGGTAGGAACTAAATCGATACAAAATTTAGACTTCATATATATACAAGTTCATTGCACCTTAACTTCTGATTCTTAACAGGTTCTTGGGTGAACTTTTTTGGAAATATAGGGAAGCCCTTGTTAGCTTTGGTATGATCTCTCTCTCTTATAGAAGTCAAATTTTTATTGTATTGCTGAATATATCATTTCAGAGCCACAACTATGGCGTCTAAACCTTTTGGAGTAATTTAAGTGAGCAATATTTGGTCACTACATCTATTTATACTATGCTGCAGGTCTCTATAGCGTTTGATCTGATTTTCATCTATCAACATTTCGTATTATATCATATGAAGGCATCAAAGGTTTCATTTGAACGTGACCCTGAAAGCATTGAGCCATTGATTAAGGACTCTGCGATCACTTGCAATTGCAAGGGATTGCCCCAACTTGTTGATACTTGATGGTGTTGATTCCACCTCTTAGCTTCTTTTTGTGCTTAAGAGGTATATGACAACATAAACATAGTCTGATAAATTCTACTTTTGTCCTTGTGCTTTCGACTTCGGTTTATATTAGTCGCTATAATATTAAAAATGGATCATTTTGATCTCTTAAAAGAGATGTCATATTGAATTTATTACGCTATTCATGTAAATACACTCCTACATTTGAGATTGTAGTACAAAGTTTTCCCCCTTTTTTTAGTTCAATAATTGCAGGGTAAATTGGATTATCG

mRNA sequence

ATGCTCCCAGTTCCCAGAGGCATCACAGTCTCTGCTCTGAGATCATCTTCTGAATTAAGGTGAGAAGAGCGAGAGAGAGAGAAATGGGTTCATGGAATTCAATTCCAATGGAGATCATATATGAGGTATTAGGATGGATTTCCATTATATGCTGGGCGGTTGCCGGATATCCACAGCTCTTTCTGAATTTCCGGCGAAAAAGTGTTGTAGGATTAAGCTTCGATTATGTGGTTCTGAATTTCACGAAGCAATCGTCGTATTTGATATACAACGCTACTCTGTTCTTCAGCTCCACTGTTCAGAGGCAGTACTTCGACAAATACGGCTACGATCAGATTATACCGGTGGCTTTGAGCGATGTGTTTTTCCCGTTGCACTCCATTTTATTGATCTTCGTCGTCTCAGTTCAAATTGTATTTTTTGAACGTGGCAACCAGAAGGTTTCCAAGGCTGCCATCGCCATCTTCGTGTCGGCATTTTTGAACTTCTCCCGAAAAAGTACAGTTGGATTCAGCATTGATCCTACACTCCTTGACCTCACTGGAGGAGTGGCAACTTTAGTTCAAATGAGCGTGCAGTCAATTGACCAAGGGAAGCCCTTGTTAGCTTTGGTCTCTATAGCGTTTGATCTGATTTTCATCTATCAACATTTCGTATTATATCATATGAAGGCATCAAAGGTTTCATTTGAACGTGACCCTGAAAGCATTGAGCCATTGATTAAGGACTCTGCGATCACTTGCAATTGCAAGGGATTGCCCCAACTTGTTGATACTTGATGGTGTTGATTCCACCTCTTAGCTTCTTTTTGTGCTTAAGAGGTATATGACAACATAAACATAGTCTGATAAATTCTACTTTTGTCCTTGTGCTTTCGACTTCGGTTTATATTAGTCGCTATAATATTAAAAATGGATCATTTTGATCTCTTAAAAGAGATGTCATATTGAATTTATTACGCTATTCATGTAAATACACTCCTACATTTGAGATTGTAGTACAAAGTTTTCCCCCTTTTTTTAGTTCAATAATTGCAGGGTAAATTGGATTATCG

Coding sequence (CDS)

ATGGGTTCATGGAATTCAATTCCAATGGAGATCATATATGAGGTATTAGGATGGATTTCCATTATATGCTGGGCGGTTGCCGGATATCCACAGCTCTTTCTGAATTTCCGGCGAAAAAGTGTTGTAGGATTAAGCTTCGATTATGTGGTTCTGAATTTCACGAAGCAATCGTCGTATTTGATATACAACGCTACTCTGTTCTTCAGCTCCACTGTTCAGAGGCAGTACTTCGACAAATACGGCTACGATCAGATTATACCGGTGGCTTTGAGCGATGTGTTTTTCCCGTTGCACTCCATTTTATTGATCTTCGTCGTCTCAGTTCAAATTGTATTTTTTGAACGTGGCAACCAGAAGGTTTCCAAGGCTGCCATCGCCATCTTCGTGTCGGCATTTTTGAACTTCTCCCGAAAAAGTACAGTTGGATTCAGCATTGATCCTACACTCCTTGACCTCACTGGAGGAGTGGCAACTTTAGTTCAAATGAGCGTGCAGTCAATTGACCAAGGGAAGCCCTTGTTAGCTTTGGTCTCTATAGCGTTTGATCTGATTTTCATCTATCAACATTTCGTATTATATCATATGAAGGCATCAAAGGTTTCATTTGAACGTGACCCTGAAAGCATTGAGCCATTGATTAAGGACTCTGCGATCACTTGCAATTGCAAGGGATTGCCCCAACTTGTTGATACTTGA

Protein sequence

MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYLIYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKVSKAAIAIFVSAFLNFSRKSTVGFSIDPTLLDLTGGVATLVQMSVQSIDQGKPLLALVSIAFDLIFIYQHFVLYHMKASKVSFERDPESIEPLIKDSAITCNCKGLPQLVDT

Homology

[Close]

BLAST of Lsi05G004720 vs. ExPASy Swiss-Prot
Match: P57758 (Cystinosin homolog OS=Arabidopsis thaliana OX=3702 GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.8e-56
Identity = 124/266 (46.62%), Postives = 162/266 (60.90%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           M SWNSIP+EI YE++GWI+   W+++ YPQL LNFRR+SVVGL+FD+V+LN TK SSY+
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYN  L+FS  +Q+QYFD YG  ++IPVA +DV F +H++++  V   QI  +ERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKAAIAIFV----------------------------------------SAFLNFSRKST 180
           S+ AI I V                                         A +NF+RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 217
           VG+SI   LLD TGG+A  +QM +QSIDQ          GK LL+L+SI FD++F++QH+
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHY 240

[Close]

BLAST of Lsi05G004720 vs. ExPASy Swiss-Prot
Match: Q54WT7 (Cystinosin homolog OS=Dictyostelium discoideum OX=44689 GN=ctns PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-34
Identity = 88/242 (36.36%), Postives = 130/242 (53.72%), Query Frame = 0


Query: 9   MEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYLIYNATLFF 68
           + II  ++GWI   CW+++ YPQ+ LNFR+K+V+GLSFD+++ N T  + Y ++N+ L+F
Sbjct: 4   LSIISIIIGWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYF 63

Query: 69  SSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKVSKAAIAI- 128
              V+ +Y+DKYG    IPV  SD+ F +H  +L  +  +Q   ++RGNQK SK  I I 
Sbjct: 64  DKLVKNEYYDKYG--PPIPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIA 123

Query: 129 ---------------------------------FVS-------AFLNFSRKSTVGFSIDP 188
                                            F++       A+LNF  KST G+S+  
Sbjct: 124 TLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHN 183

Query: 189 TLLDLTGGVATLVQMSVQSIDQG----------KPLLALVSIAFDLIFIYQHFVLYHMKA 200
            LLD +GGV +L+QM +   D G          K  L+L SIAFD++FI QH++LY    
Sbjct: 184 VLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPK 243

[Close]

BLAST of Lsi05G004720 vs. ExPASy Swiss-Prot
Match: A7MB63 (Cystinosin OS=Bos taurus OX=9913 GN=CTNS PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.3e-31
Identity = 90/239 (37.66%), Postives = 127/239 (53.14%), Query Frame = 0


Query: 9   MEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYLIYNATLFF 68
           + II +V+GWI  + W+V+ YPQ+  N+RRKSVVGLSFD+VVLN     +Y ++N  LF+
Sbjct: 123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFW 182

Query: 69  SSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKVSKAAIAI- 128
             +++ Q+  KY  + + PV  +DVFF LH++ L  VV VQ + +ERG+Q+VS  AI+  
Sbjct: 183 VPSIKEQFLLKYP-NGVNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFL 242

Query: 129 ----------------------------------------FVSAFLNFSRKSTVGFSIDP 188
                                                   F  A++NF  KST G+SI  
Sbjct: 243 VLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGN 302

Query: 189 TLLDLTGGVATLVQMSVQSIDQ-------GKPL---LALVSIAFDLIFIYQHFVLYHMK 197
            LLD TGG  +L+QM +QS +        G P    L + SI FD++F  QHF LY  K
Sbjct: 303 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360

[Close]

BLAST of Lsi05G004720 vs. ExPASy Swiss-Prot
Match: O60931 (Cystinosin OS=Homo sapiens OX=9606 GN=CTNS PE=1 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 85/242 (35.12%), Postives = 125/242 (51.65%), Query Frame = 0


Query: 6   SIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYLIYNAT 65
           S  + II +V+GWI  + W+++ YPQ+ +N+RRKSV+GLSFD+V LN T   +Y ++N  
Sbjct: 120 SSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIG 179

Query: 66  LFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKVSKAAI 125
           L +   ++ Q+  KY  + + PV  +DVFF LH+++L  ++ VQ   +ERG Q+VS  AI
Sbjct: 180 LLWVPYIKEQFLLKYP-NGVNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAI 239

Query: 126 AI-----------------------------------------FVSAFLNFSRKSTVGFS 185
                                                      F  A++NF  KST G+S
Sbjct: 240 GFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWS 299

Query: 186 IDPTLLDLTGGVATLVQMSVQSIDQ-------GKPL---LALVSIAFDLIFIYQHFVLYH 197
           I   LLD TGG  +L+QM +QS +        G P    L + SI FD++F  QHF LY 
Sbjct: 300 IGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLYR 359

[Close]

BLAST of Lsi05G004720 vs. ExPASy Swiss-Prot
Match: Q09500 (Cystinosin homolog OS=Caenorhabditis elegans OX=6239 GN=ctns-1 PE=3 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 6.8e-29
Identity = 79/236 (33.47%), Postives = 125/236 (52.97%), Query Frame = 0


Query: 9   MEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYLIYNATLFF 68
           + I+ +++GW     W+++ YPQ++LNF+RKSVVGL+FD++ LN     +Y I+N  +++
Sbjct: 125 LAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLVGFCAYAIFNLLMYY 184

Query: 69  SSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKVSKAAIAI- 128
           +S V+ +Y +        PV L+DV F +H+ L  F+  +Q +F+ER NQ VS   IA+ 
Sbjct: 185 NSHVKNEY-NIVNPRSPPPVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALM 244

Query: 129 ----------------------------------------FVSAFLNFSRKSTVGFSIDP 188
                                                   F  A+ N++RKSTVG+SI  
Sbjct: 245 IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIGN 304

Query: 189 TLLDLTGGVATLVQMSVQSID-------QGKPL---LALVSIAFDLIFIYQHFVLY 194
            +LD TGG   ++QM +Q+++          P+   L  VSI FD+IF+ QH+VLY
Sbjct: 305 IMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLY 359

[Close]

BLAST of Lsi05G004720 vs. ExPASy TrEMBL
Match: A0A5D3E357 (Cystinosin-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00520 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.7e-99
Identity = 203/280 (72.50%), Postives = 215/280 (76.79%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           MGSWNSIPME++Y+VLGWISIICWA +GYPQL LNFRRKSVVGLSFDYVVLNFTKQ+SYL
Sbjct: 1   MGSWNSIPMEVMYQVLGWISIICWAFSGYPQLLLNFRRKSVVGLSFDYVVLNFTKQASYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNATLFFS  VQ+QYFDKYGYDQ+IPVALSDVFFP H+ILLIFVV++QIVFFERGNQKV
Sbjct: 61  IYNATLFFSPIVQKQYFDKYGYDQMIPVALSDVFFPSHAILLIFVVTLQIVFFERGNQKV 120

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           SKAAI IFVS                                        AF+NFSRKST
Sbjct: 121 SKAAIGIFVSVWFFAAGCVLIASSTHSWLWLISMFNSIQVFMTLIKCSPQAFMNFSRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 231
           VGFSIDP +LDL GGVATLVQMSVQSIDQ          GKP LALVSIAFDLIFIYQHF
Sbjct: 181 VGFSIDPIVLDLIGGVATLVQMSVQSIDQGSWMNFFGNIGKPSLALVSIAFDLIFIYQHF 240

[Close]

BLAST of Lsi05G004720 vs. ExPASy TrEMBL
Match: A0A1S3BP09 (cystinosin homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491741 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.5e-99
Identity = 201/280 (71.79%), Postives = 214/280 (76.43%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           MGSWNSIPME++Y+VLGWISIICWA +GYPQL LNFRRKSVVGLSFDYVVLNFTKQ+SYL
Sbjct: 1   MGSWNSIPMEVMYQVLGWISIICWAFSGYPQLLLNFRRKSVVGLSFDYVVLNFTKQASYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNATLFFS  VQ+QYFDKYGYDQ++PVALSDVFFP H+ILLIFVV++QIVFFERGNQKV
Sbjct: 61  IYNATLFFSPIVQKQYFDKYGYDQMVPVALSDVFFPSHAILLIFVVTLQIVFFERGNQKV 120

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           SKAAI IFVS                                        AF+NFSRKST
Sbjct: 121 SKAAIGIFVSVWFFAACCVLIASSTHSWLWLISMFNSIQVFMTLIKCSPQAFMNFSRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 231
           VGFSIDP +LDL GGV TLVQMSVQSIDQ          GKP LALVSIAFDLIFIYQHF
Sbjct: 181 VGFSIDPIVLDLIGGVTTLVQMSVQSIDQGSWMNFFGNIGKPSLALVSIAFDLIFIYQHF 240

[Close]

BLAST of Lsi05G004720 vs. ExPASy TrEMBL
Match: A0A0A0LB92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G596240 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.7e-86
Identity = 180/268 (67.16%), Postives = 201/268 (75.00%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           M SWNSI MEI+Y VLGWISI+CWA+A YPQ+ LNFRRKSVVGLSFDY++LNFTKQSSYL
Sbjct: 1   MSSWNSISMEILYGVLGWISILCWALASYPQVILNFRRKSVVGLSFDYLILNFTKQSSYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNATLFFS+TVQ+QYFDKYGYDQ+IPVALSDVFFP HSI+LI VVSVQIVFF+RG+QKV
Sbjct: 61  IYNATLFFSTTVQKQYFDKYGYDQMIPVALSDVFFPFHSIILILVVSVQIVFFDRGSQKV 120

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           SKA+IAI V+                                        AFLNF+RKST
Sbjct: 121 SKASIAILVAVWFFAGACFFMALPTHSWLWLVSIFNSIQVFMTFIKYSPQAFLNFTRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 217
           VGFSI   +LD +GGVATL QMSVQS+DQ          GKPLLALVSIAFDLIF YQHF
Sbjct: 181 VGFSIGNIVLDFSGGVATLAQMSVQSVDQGSWVNFLGNIGKPLLALVSIAFDLIFFYQHF 240

[Close]

BLAST of Lsi05G004720 vs. ExPASy TrEMBL
Match: A0A6J1DN06 (cystinosin homolog OS=Momordica charantia OX=3673 GN=LOC111021514 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.4e-85
Identity = 177/280 (63.21%), Postives = 199/280 (71.07%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           M SWNS+P+EI+YEVLGW SIICW VAGYPQ+ LNFRRKSVVG SFDY++LNFTKQSSYL
Sbjct: 1   MASWNSVPLEIVYEVLGWSSIICWGVAGYPQVILNFRRKSVVGFSFDYLILNFTKQSSYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYN +LFFS+ VQRQYFDKYGYDQ+IPVALSDV FP+HS+LLIFV SVQI F ERGNQK+
Sbjct: 61  IYNVSLFFSAAVQRQYFDKYGYDQMIPVALSDVIFPIHSLLLIFVFSVQIAFSERGNQKL 120

Query: 121 SKAAIAIFV----------------------------------------SAFLNFSRKST 180
           SK AIAIF                                          AF+NF+RKST
Sbjct: 121 SKIAIAIFAGVWFFAAACFFIALPTHSWLWLVSIFNTIQVFMTIIKYSPQAFMNFTRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 231
           VGFSI   +LD TGGVA+L QMSVQSIDQ          GKPLLAL+SI FDLIF YQHF
Sbjct: 181 VGFSIGNVVLDFTGGVASLAQMSVQSIDQGSWVNFFGNIGKPLLALISIMFDLIFFYQHF 240

[Close]

BLAST of Lsi05G004720 vs. ExPASy TrEMBL
Match: A0A6J1EJ63 (cystinosin homolog OS=Cucurbita moschata OX=3662 GN=LOC111435077 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.8e-78
Identity = 164/266 (61.65%), Postives = 191/266 (71.80%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           M SWNS+PMEI+Y++LGW +IICWA+A YPQ+ LNF RKSVVGLSFD+V+LNFTKQSSYL
Sbjct: 33  MASWNSVPMEILYQLLGWSAIICWALASYPQIILNFWRKSVVGLSFDFVMLNFTKQSSYL 92

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNA+LFFS+TVQRQYF+KYG+DQ+IPVALSDVFFP HSILLIF+VSVQI  FE G+QKV
Sbjct: 93  IYNASLFFSATVQRQYFEKYGFDQMIPVALSDVFFPSHSILLIFIVSVQIFLFECGDQKV 152

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           S +A+AIF +                                        AFLNF+RKST
Sbjct: 153 SNSAVAIFAAVWVFAAACFFIALPTHSWLWLVSMFNSIQVLMTVIKYSPQAFLNFTRKST 212

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 217
           +GFSI   +LD  GGVATL QM VQSIDQ          GKPLLA VSI FDLIF YQHF
Sbjct: 213 MGFSIHTVVLDFIGGVATLTQMGVQSIDQGSWVNFFGNIGKPLLASVSIVFDLIFFYQHF 272

[Close]

BLAST of Lsi05G004720 vs. NCBI nr
Match: XP_038880439.1 (cystinosin homolog [Benincasa hispida])

HSP 1 Score: 390.6 bits (1002), Expect = 9.5e-105
Identity = 213/280 (76.07%), Postives = 220/280 (78.57%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           M SWNSIPMEIIYEVLGWISIICWA AGYPQL +NFRRKSVVGLSFDYVVLNFTKQSSYL
Sbjct: 1   MSSWNSIPMEIIYEVLGWISIICWAFAGYPQLIMNFRRKSVVGLSFDYVVLNFTKQSSYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNATLFFS+TVQ+QYFDKYGYDQ+IPVALSDVFFPLH+ILLIFVVSVQIVFFERGNQKV
Sbjct: 61  IYNATLFFSTTVQKQYFDKYGYDQMIPVALSDVFFPLHAILLIFVVSVQIVFFERGNQKV 120

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           SKAAIAIFVS                                        AFLNF+RKST
Sbjct: 121 SKAAIAIFVSVWFFAAACLYIAIPTHSWLWLISMFNSIQVFMTLIKCSPQAFLNFTRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 231
            GFSIDP LLDLTGGVATLVQMSVQSIDQ          GKPLLALVSIAFDLIFIYQHF
Sbjct: 181 AGFSIDPILLDLTGGVATLVQMSVQSIDQGSWVNFFGNIGKPLLALVSIAFDLIFIYQHF 240

[Close]

BLAST of Lsi05G004720 vs. NCBI nr
Match: KAA0066948.1 (cystinosin-like protein isoform X1 [Cucumis melo var. makuwa] >TYK30229.1 cystinosin-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 372.1 bits (954), Expect = 3.5e-99
Identity = 203/280 (72.50%), Postives = 215/280 (76.79%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           MGSWNSIPME++Y+VLGWISIICWA +GYPQL LNFRRKSVVGLSFDYVVLNFTKQ+SYL
Sbjct: 1   MGSWNSIPMEVMYQVLGWISIICWAFSGYPQLLLNFRRKSVVGLSFDYVVLNFTKQASYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNATLFFS  VQ+QYFDKYGYDQ+IPVALSDVFFP H+ILLIFVV++QIVFFERGNQKV
Sbjct: 61  IYNATLFFSPIVQKQYFDKYGYDQMIPVALSDVFFPSHAILLIFVVTLQIVFFERGNQKV 120

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           SKAAI IFVS                                        AF+NFSRKST
Sbjct: 121 SKAAIGIFVSVWFFAAGCVLIASSTHSWLWLISMFNSIQVFMTLIKCSPQAFMNFSRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 231
           VGFSIDP +LDL GGVATLVQMSVQSIDQ          GKP LALVSIAFDLIFIYQHF
Sbjct: 181 VGFSIDPIVLDLIGGVATLVQMSVQSIDQGSWMNFFGNIGKPSLALVSIAFDLIFIYQHF 240

[Close]

BLAST of Lsi05G004720 vs. NCBI nr
Match: XP_008450029.1 (PREDICTED: cystinosin homolog isoform X1 [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98
Identity = 201/280 (71.79%), Postives = 214/280 (76.43%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           MGSWNSIPME++Y+VLGWISIICWA +GYPQL LNFRRKSVVGLSFDYVVLNFTKQ+SYL
Sbjct: 1   MGSWNSIPMEVMYQVLGWISIICWAFSGYPQLLLNFRRKSVVGLSFDYVVLNFTKQASYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNATLFFS  VQ+QYFDKYGYDQ++PVALSDVFFP H+ILLIFVV++QIVFFERGNQKV
Sbjct: 61  IYNATLFFSPIVQKQYFDKYGYDQMVPVALSDVFFPSHAILLIFVVTLQIVFFERGNQKV 120

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           SKAAI IFVS                                        AF+NFSRKST
Sbjct: 121 SKAAIGIFVSVWFFAACCVLIASSTHSWLWLISMFNSIQVFMTLIKCSPQAFMNFSRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 231
           VGFSIDP +LDL GGV TLVQMSVQSIDQ          GKP LALVSIAFDLIFIYQHF
Sbjct: 181 VGFSIDPIVLDLIGGVTTLVQMSVQSIDQGSWMNFFGNIGKPSLALVSIAFDLIFIYQHF 240

[Close]

BLAST of Lsi05G004720 vs. NCBI nr
Match: XP_038884260.1 (cystinosin homolog isoform X3 [Benincasa hispida])

HSP 1 Score: 339.3 bits (869), Expect = 2.5e-89
Identity = 187/266 (70.30%), Postives = 200/266 (75.19%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           MGSWNSI MEIIY+VLGWISIICWA+A YPQ+ LNFRRKSVVGLSFDYV+LN TKQSSYL
Sbjct: 1   MGSWNSISMEIIYQVLGWISIICWALASYPQVILNFRRKSVVGLSFDYVMLNCTKQSSYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNATLFFSSTVQRQYFDKYGYDQ+IPVALSDVFFP HSILLI VVSVQIVFF+RGNQKV
Sbjct: 61  IYNATLFFSSTVQRQYFDKYGYDQMIPVALSDVFFPFHSILLISVVSVQIVFFDRGNQKV 120

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           SK +IAIFV+                                        AFLNF+RKST
Sbjct: 121 SKTSIAIFVAVWFFAAACFFMALPTHSWLWLVSIFNSIQVFMTFIKYSPQAFLNFTRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 217
           VGFSI   +LD TGGV TL QMSVQSIDQ          GKPLLALVSI FDLIF YQHF
Sbjct: 181 VGFSIGNIVLDFTGGVGTLAQMSVQSIDQGSWVNFFGNIGKPLLALVSIGFDLIFFYQHF 240

[Close]

BLAST of Lsi05G004720 vs. NCBI nr
Match: XP_004145688.1 (cystinosin homolog isoform X2 [Cucumis sativus] >KGN58224.1 hypothetical protein Csa_017462 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 7.6e-86
Identity = 180/268 (67.16%), Postives = 201/268 (75.00%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           M SWNSI MEI+Y VLGWISI+CWA+A YPQ+ LNFRRKSVVGLSFDY++LNFTKQSSYL
Sbjct: 1   MSSWNSISMEILYGVLGWISILCWALASYPQVILNFRRKSVVGLSFDYLILNFTKQSSYL 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYNATLFFS+TVQ+QYFDKYGYDQ+IPVALSDVFFP HSI+LI VVSVQIVFF+RG+QKV
Sbjct: 61  IYNATLFFSTTVQKQYFDKYGYDQMIPVALSDVFFPFHSIILILVVSVQIVFFDRGSQKV 120

Query: 121 SKAAIAIFVS----------------------------------------AFLNFSRKST 180
           SKA+IAI V+                                        AFLNF+RKST
Sbjct: 121 SKASIAILVAVWFFAGACFFMALPTHSWLWLVSIFNSIQVFMTFIKYSPQAFLNFTRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 217
           VGFSI   +LD +GGVATL QMSVQS+DQ          GKPLLALVSIAFDLIF YQHF
Sbjct: 181 VGFSIGNIVLDFSGGVATLAQMSVQSVDQGSWVNFLGNIGKPLLALVSIAFDLIFFYQHF 240

[Close]

BLAST of Lsi05G004720 vs. TAIR 10
Match: AT5G40670.1 (PQ-loop repeat family protein / transmembrane family protein )

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-57
Identity = 124/266 (46.62%), Postives = 162/266 (60.90%), Query Frame = 0


Query: 1   MGSWNSIPMEIIYEVLGWISIICWAVAGYPQLFLNFRRKSVVGLSFDYVVLNFTKQSSYL 60
           M SWNSIP+EI YE++GWI+   W+++ YPQL LNFRR+SVVGL+FD+V+LN TK SSY+
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNATLFFSSTVQRQYFDKYGYDQIIPVALSDVFFPLHSILLIFVVSVQIVFFERGNQKV 120
           IYN  L+FS  +Q+QYFD YG  ++IPVA +DV F +H++++  V   QI  +ERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKAAIAIFV----------------------------------------SAFLNFSRKST 180
           S+ AI I V                                         A +NF+RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 VGFSIDPTLLDLTGGVATLVQMSVQSIDQ----------GKPLLALVSIAFDLIFIYQHF 217
           VG+SI   LLD TGG+A  +QM +QSIDQ          GK LL+L+SI FD++F++QH+
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHY 240

The following BLAST results are available for this feature:

BLAST of Lsi05G004720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P57758	3.8e-56	46.62	Cystinosin homolog OS=Arabidopsis thaliana OX=3702 GN=At5g40670 PE=2 SV=1	[more]
Q54WT7	1.8e-34	36.36	Cystinosin homolog OS=Dictyostelium discoideum OX=44689 GN=ctns PE=3 SV=1	[more]
A7MB63	4.3e-31	37.66	Cystinosin OS=Bos taurus OX=9913 GN=CTNS PE=2 SV=1	[more]
O60931	1.4e-29	35.12	Cystinosin OS=Homo sapiens OX=9606 GN=CTNS PE=1 SV=2	[more]
Q09500	6.8e-29	33.47	Cystinosin homolog OS=Caenorhabditis elegans OX=6239 GN=ctns-1 PE=3 SV=2	[more]

BLAST of Lsi05G004720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E357	1.7e-99	72.50	Cystinosin-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BP09	6.5e-99	71.79	cystinosin homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491741 PE=4 SV=1	[more]
A0A0A0LB92	3.7e-86	67.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G596240 PE=4 SV=1	[more]
A0A6J1DN06	1.4e-85	63.21	cystinosin homolog OS=Momordica charantia OX=3673 GN=LOC111021514 PE=4 SV=1	[more]
A0A6J1EJ63	2.8e-78	61.65	cystinosin homolog OS=Cucurbita moschata OX=3662 GN=LOC111435077 PE=4 SV=1	[more]

BLAST of Lsi05G004720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880439.1	9.5e-105	76.07	cystinosin homolog [Benincasa hispida]	[more]
KAA0066948.1	3.5e-99	72.50	cystinosin-like protein isoform X1 [Cucumis melo var. makuwa] >TYK30229.1 cystin...	[more]
XP_008450029.1	1.3e-98	71.79	PREDICTED: cystinosin homolog isoform X1 [Cucumis melo]	[more]
XP_038884260.1	2.5e-89	70.30	cystinosin homolog isoform X3 [Benincasa hispida]	[more]
XP_004145688.1	7.6e-86	67.16	cystinosin homolog isoform X2 [Cucumis sativus] >KGN58224.1 hypothetical protein...	[more]

BLAST of Lsi05G004720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40670.1	2.7e-57	46.62	PQ-loop repeat family protein / transmembrane family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006603	PQ-loop repeat	SMART	SM00679	ctns	coord: 125..156 e-value: 6.4 score: 7.8 coord: 26..57 e-value: 4.3E-5 score: 32.9
IPR006603	PQ-loop repeat	PFAM	PF04193	PQ-loop	coord: 13..69 e-value: 8.6E-18 score: 63.9 coord: 133..166 e-value: 9.1E-7 score: 28.6
None	No IPR available	GENE3D	1.20.1280.290		coord: 12..123 e-value: 8.2E-9 score: 37.5
None	No IPR available	PANTHER	PTHR13131:SF11	LYSOSOMAL CYSTINE TRANSPORTER FAMILY PROTEIN	coord: 1..129 coord: 131..204
IPR005282	Lysosomal cystine transporter	PANTHER	PTHR13131	CYSTINOSIN	coord: 1..129 coord: 131..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G004720.1	Lsi05G004720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015811	L-cystine transport
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0015184	L-cystine transmembrane transporter activity