Lsi05G004700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G004700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cystinosin homolog
Location	chr05: 5953801 .. 5957333 (-)
RNA-Seq Expression	Lsi05G004700
Synteny	Lsi05G004700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAACATAATTTTAGTCCCAAAATATCGTTTGAAGCACTCTTCATTCTTCGTCGCCACTTCATCGTTACGCTGACTGTGTGATCCAAAACTCACAATCTTCTCTCCTCGGCACTGAAGCTGATTTAAGGAGGGAGAAAGAGATGGCTATGGCTTCTTGGAAATGGAATTCAGTTTCACTCTACCCATTTGCAAAGTTTACTCTTCAATGCGTATTTACTCGGATGTATTACTTGGAGAAATATAGCCATGGACAAGGTTTGCTACTTGGGTGGTTCAGTTGTTTTACTTTGTCACTAATCAATTATCACGATTGTAGTGGACCTCATTTGAGACTGATGATTTGAATCTCAATAAGTTACCATGAAGAAGAATCCCTAGTTTTTAGGGATTTTCTGCAAATTGATGAATTCGTGTTGAAGTAACTCTTATTTTGATTTACATATCTGCAAACATGCGTTGATTTCTCGAGAAATTTTAGCATTATAGCAATGGAAAATGAAGAATAACAATATGGTTTTATGATTCTTCTGTTGAAGACACTCACGCTGCAGCCTTGCTGTTAAATGAGTTACATTGAATCTGAACAGTTTTCATTGGTTCTTGCAGATGATACCGGTGGCTTTGAGCGATGTGTTTTTCCCCTTCCACTCGATTTTATTGATCTTCGTCGTCTCCGTTCAAATTGTCTTTTTTGAAGTTAGTGGTTTGTTCTCTTTTGGATTTGGATCTAGCTTTGGTTTAATTTGGGTGACTATTTCGCATTGTATTGATTGGGATTTTGGTGCAGCGTGGCAACCAGAAAGTCTCAAAGACAGCCATTGCTATCTTCGTTGCAGTATGGTTCTTTGCAGCAGCCTGCTTTTTTATGGCTCTGCCAACCCATTCATGGCTTTGGCTCGTCTCCATATTCAAGTAAACCATTTCCCCATCTCTTAAAATATTGTGAAAGCTATGTTGATTGATTTGCTAATAATTTGGCCAGGATCATTGTCAATGTGTTGCAGTTCAATTCAAGTTTTTTTGACATTCATCAAATACTCTCCTCAGGTTTGGCTTTCTGCCCGGTAGAAAGTAGGCTAAACCACACATTTAATTCTCCATTATATATGTACTAACTTTTTTCATGATTCAACTTAATATAGATAATAAACTTTTTTTTATTATGTTTTTTTTCTTCTTACAATAAGTTACACATAAGAGAATCATTCATTTTATCATATTAAGTTTCATGTATGTGGTCTTGTAGATGAGAATAAAGAGAAGGTGATGGAGAAAAAAATTGGCACAATTCACAACATACTTGTGTTCAATCTTTTTAATTAACAATTGTCATCTCTGATATCTAAATTCTTCGATATTGGTCCAGTTTCCACTAGTTATGAATAATTTTGGTAAAAATTAATGGATTAATATATTAGAAACTAATAGCACAAGATTAAATGTTTTAATGTATTCTTGTCCGGTAACCGAAAGGTCAAGTATATGAAGATAAAATTTACATTTAATCATCCCCCTGCAAAGACACTAAATTGCCCTACATTTGAGACCTACAACTCTAAGTCTACAAGAATAGTCCAACCCCAAGTAAGGTGATATTTCATTGAATTATCCAGCCCGGCAAGTCACGGGATTATTTATTAGCTAACCAAACATACGCAACATGATCATGTTGCTCTTGAGACTTGTAAAGTCATTTGAGAAAAAAACTTTGTGCACATGTATGCTACTAATATAAGTTTGCAAATGAAGAACAAAGAAGCTTGTATTTCATGAAATCTCTGTTGTTTACATACAGGCGTTTTTGAACTTCACCAGAAAGAGTACAGTGGGATTCAGCATTGGTAATATAGTTCTTGACTTCACTGGAGGAGTGGCAACTTTGGCTCAGATGAGCGTGCAGTCAATTGACCAAGGTCGTCTAATGTTTTTTAACCAAACATATTCCAAATACTTCTATCGTAATTTATGTTTATGCATAGCTTGGTATTGAGTCATATTTTATTTCAACCGTATAAATTTTTATTAAAAAAAGTGAAAAGTTATTTAAATCGTAAGACAAATTAATCTATCACAAGATAAATGCAGAATACACCAAGCATATGGTTCTGATATGGTTGTTCATCCCAAGGCTAGGATAAGCTTACAAGAATCTATTTTGAACGTGTTACTATTATATGCAAAATTCATACTTATCAATGTAATTTTTATCTATGTAAATGTTATTCTTGTTTCTCCGTTTTTCGTCTTTCTTATTTTCTTTCCAATTAGAAAGTCTTCATGTCTCCTCAATCCACCTTTTCGTGATTAGGACCGGTTCTTATGGCTTTCTCGGGTGTGTACAATTTCGTGAGATTTTGAGATGAGAGGAATGGTAGAATTTTTTAGGTTTGGAGAGGGACCTTATGGATGTTTTGTCCTTCGTTAGATTTCATGTTTCTCTTGAGGCTTCGATTTTAAAGAGCTTTTGTAATTATTTTATAGATTCTATTTTGCACAGTTAGAGCCCCCTTTCCTTAAATAAGGTTTCTTTTTGAGCGCTTGTCTTTTTGTATGTCCTTGTATTCTTTCATTTTTTTTCTCAATGAAAGTTATTTCATCTAAAAAAGGTTTTTGGAGCTATTGCTCCTTTTATTTCATTCTTCAGTAAAATTTGGTTCTCTTCTTAAAAAAATATATTTATCCATGTACTTTTGTAAACTGTACCATGGATAAAAATTTTAGGGTTAAATAAACATATTTGGTCTAATGCTTTCATCATTTTATTAAAATAATGATTTAAGTCTACTCCTTGAAGTTTAGCATATAACAATTTAGTTTCTATAGTTTCAAATTTGTAATGATCTAATTTTTGAGTTTTAGCTTGTATTGATTTAGTTAATTAAGAATTTGTAATGATTTAATTCTTACTGTGAGAAATTTTATAATGGTGAAGTATTGATCAATCTACATGCATAAGAAACCTTCCTTGGACCTTCGACTGGATTTTCATGAAGAAAAACTAGATTGCTACAAAATTTAAACTGCATATTAAAGTTTATGGATTAAATTGTTGCAAACTATAAACTACACGGACTCATTCTCTTGCATGCTAAGAAGTTGATAGACCAGATGTGTTTTTAACTAAATAATTGATACTTGATACTATTATCCTAAATTCCATTTAGATTTTGACTTCGTATCTTTCCAGGTTCTTGGGTGAACTTTTTTGGAAACATAGGGAAGCCCTTGCTAGCTTTGGTATGGTCTCTCTCTCTTGTAGATGTTTAATTCCTTGTATTGCTGATGATTTCATTTAAGAACCAATTATGGCATTTAAACCTTTTCGAGTAATTTGAGTTTGCAGTTTTTTTGCTCACTACATCTAGACTGTGCTGCAGGTCTCTATAGCATTTGATCTGATTTTCTTCTATCAACATTTTGTATTATATCATACCAAGGCATCAAGGGTTTCATTTCAACGTGACCCTGAAAGCACTGAGCCATTGATTAAGGACTCTGATCACTTGCAAGGGATTGCCACAGCCAGTTGA

mRNA sequence

AGAAAACATAATTTTAGTCCCAAAATATCGTTTGAAGCACTCTTCATTCTTCGTCGCCACTTCATCGTTACGCTGACTGTGTGATCCAAAACTCACAATCTTCTCTCCTCGGCACTGAAGCTGATTTAAGGAGGGAGAAAGAGATGGCTATGGCTTCTTGGAAATGGAATTCAGTTTCACTCTACCCATTTGCAAAGTTTACTCTTCAATGCGTATTTACTCGGATGTATTACTTGGAGAAATATAGCCATGGACAAGCGTGGCAACCAGAAAGTCTCAAAGACAGCCATTGCTATCTTCGTTGCAGTATGGTTCTTTGCAGCAGCCTGCTTTTTTATGGCTCTGCCAACCCATTCATGGCTTTGGCTCGTCTCCATATTCAAGCGTTTTTGAACTTCACCAGAAAGAGTACAGTGGGATTCAGCATTGGTAATATAGTTCTTGACTTCACTGGAGGAGTGGCAACTTTGGCTCAGATGAGCGTGCAGTCAATTGACCAAGGTTCTTGGGTGAACTTTTTTGGAAACATAGGGAAGCCCTTGCTAGCTTTGACTGTGCTGCAGGTCTCTATAGCATTTGATCTGATTTTCTTCTATCAACATTTTGTATTATATCATACCAAGGCATCAAGGGTTTCATTTCAACGTGACCCTGAAAGCACTGAGCCATTGATTAAGGACTCTGATCACTTGCAAGGGATTGCCACAGCCAGTTGA

Coding sequence (CDS)

ATGGCTATGGCTTCTTGGAAATGGAATTCAGTTTCACTCTACCCATTTGCAAAGTTTACTCTTCAATGCGTATTTACTCGGATGTATTACTTGGAGAAATATAGCCATGGACAAGCGTGGCAACCAGAAAGTCTCAAAGACAGCCATTGCTATCTTCGTTGCAGTATGGTTCTTTGCAGCAGCCTGCTTTTTTATGGCTCTGCCAACCCATTCATGGCTTTGGCTCGTCTCCATATTCAAGCGTTTTTGAACTTCACCAGAAAGAGTACAGTGGGATTCAGCATTGGTAATATAGTTCTTGACTTCACTGGAGGAGTGGCAACTTTGGCTCAGATGAGCGTGCAGTCAATTGACCAAGGTTCTTGGGTGAACTTTTTTGGAAACATAGGGAAGCCCTTGCTAGCTTTGACTGTGCTGCAGGTCTCTATAGCATTTGATCTGATTTTCTTCTATCAACATTTTGTATTATATCATACCAAGGCATCAAGGGTTTCATTTCAACGTGACCCTGAAAGCACTGAGCCATTGATTAAGGACTCTGATCACTTGCAAGGGATTGCCACAGCCAGTTGA

Protein sequence

MAMASWKWNSVSLYPFAKFTLQCVFTRMYYLEKYSHGQAWQPESLKDSHCYLRCSMVLCSSLLFYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDHLQGIATAS

Homology

[Close]

BLAST of Lsi05G004700 vs. ExPASy Swiss-Prot
Match: P57758 (Cystinosin homolog OS=Arabidopsis thaliana OX=3702 GN=At5g40670 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM   +   QA +NFTRKSTVG+SIGNI+LDFTGG+A   QM +QSIDQ SW N
Sbjct: 155 FNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKN 214

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDH 183
           F+GN+GK LL+L    +SI FD++F +QH+VLY  K    S +   ES EPLI DS H
Sbjct: 215 FYGNMGKTLLSL----ISIFFDILFMFQHYVLYPEKKVSKSPETGEESNEPLI-DSSH 267

[Close]

BLAST of Lsi05G004700 vs. ExPASy Swiss-Prot
Match: Q09500 (Cystinosin homolog OS=Caenorhabditis elegans OX=6239 GN=ctns-1 PE=3 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 8.7e-14
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 80  QAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVL 139
           QA+ N+TRKSTVG+SIGNI+LDFTGG   + QM +Q+++   W  F+ N  K  L     
Sbjct: 286 QAYFNYTRKSTVGWSIGNIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGF--- 345

Query: 140 QVSIAFDLIFFYQHFVLY 158
            VSI FD+IF  QH+VLY
Sbjct: 346 -VSIFFDIIFMVQHYVLY 359

[Close]

BLAST of Lsi05G004700 vs. ExPASy Swiss-Prot
Match: A8WN56 (Cystinosin homolog OS=Caenorhabditis briggsae OX=6238 GN=ctns-1 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 80  QAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVL 139
           QA+ N+ RKSTVG+SIGNI+LDFTGG   + QM +Q+I+   W  F+ N  K  L     
Sbjct: 285 QAYFNYQRKSTVGWSIGNILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGF--- 344

Query: 140 QVSIAFDLIFFYQHFVLY------HTKASRVSFQRDPESTEPLIKDSDH 183
            VSI FD+IF  QH+ LY      H +   V    DP+S   +++D++H
Sbjct: 345 -VSIFFDIIFMIQHYALYPDAEVPHNEYHGVD-NPDPDS---IVRDAEH 385

[Close]

BLAST of Lsi05G004700 vs. ExPASy Swiss-Prot
Match: Q54WT7 (Cystinosin homolog OS=Dictyostelium discoideum OX=44689 GN=ctns PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-13
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 64  FYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWV 123
           +Y     F+   +   QA+LNF  KST G+S+ N++LDF+GGV +L QM +   D G+W 
Sbjct: 148 YYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGGVLSLLQMFLDVADSGNWN 207

Query: 124 NFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASR 164
            F G+  K  L+L     SIAFD++F  QH++LY    S+
Sbjct: 208 IFTGDPVKLGLSL----FSIAFDILFIIQHYILYRNPKSK 243

[Close]

BLAST of Lsi05G004700 vs. ExPASy Swiss-Prot
Match: A7MB63 (Cystinosin OS=Bos taurus OX=9913 GN=CTNS PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-13
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 72  MALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGK 131
           + L +   QA++NF  KST G+SIGN++LDFTGG  +L QM +QS +   W   FG+  K
Sbjct: 276 VTLVKYFPQAYMNFHYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTK 335

Query: 132 PLLALTVLQVSIAFDLIFFYQHFVLYHTK 161
             L +     SI FD++FF QHF LY  K
Sbjct: 336 FGLGI----FSIIFDVVFFIQHFCLYRKK 360

[Close]

BLAST of Lsi05G004700 vs. ExPASy TrEMBL
Match: A0A1S4DYQ8 (cystinosin homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491742 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.9e-51
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM + +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVN
Sbjct: 101 FNSIQVFMTVIKYSPQAFLNFTRKSTVGFSIGNIVLDFSGGVATLAQMSVQSVDQGSWVN 160

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPEST--EPLIKDSDH 184
           F GNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH KASRVSFQRDPEST  EPLIKDSDH
Sbjct: 161 FLGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHIKASRVSFQRDPESTDSEPLIKDSDH 220

Query: 185 LQGIATAS 191
           LQGIAT S
Sbjct: 221 LQGIATTS 228

[Close]

BLAST of Lsi05G004700 vs. ExPASy TrEMBL
Match: A0A1S4DY01 (cystinosin homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491742 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.9e-51
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM + +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVN
Sbjct: 71  FNSIQVFMTVIKYSPQAFLNFTRKSTVGFSIGNIVLDFSGGVATLAQMSVQSVDQGSWVN 130

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPEST--EPLIKDSDH 184
           F GNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH KASRVSFQRDPEST  EPLIKDSDH
Sbjct: 131 FLGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHIKASRVSFQRDPESTDSEPLIKDSDH 190

Query: 185 LQGIATAS 191
           LQGIAT S
Sbjct: 191 LQGIATTS 198

[Close]

BLAST of Lsi05G004700 vs. ExPASy TrEMBL
Match: A0A0A0LB92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G596240 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 6.2e-47
Identity = 104/128 (81.25%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM   +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVN
Sbjct: 155 FNSIQVFMTFIKYSPQAFLNFTRKSTVGFSIGNIVLDFSGGVATLAQMSVQSVDQGSWVN 214

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPEST--EPLIKDSDH 184
           F GNIGKPLLAL    VSIAFDLIFFYQHFVLYH KASRVSFQRDPEST  EPLIKDSDH
Sbjct: 215 FLGNIGKPLLAL----VSIAFDLIFFYQHFVLYHIKASRVSFQRDPESTDSEPLIKDSDH 274

Query: 185 LQGIATAS 191
           LQGI T S
Sbjct: 275 LQGIGTTS 278

[Close]

BLAST of Lsi05G004700 vs. ExPASy TrEMBL
Match: A0A6J1DN06 (cystinosin homolog OS=Momordica charantia OX=3673 GN=LOC111021514 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 4.0e-46
Identity = 95/123 (77.24%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + +   FM + +   QAF+NFTRKSTVGFSIGN+VLDFTGGVA+LAQMSVQSIDQGSWVN
Sbjct: 155 FNTIQVFMTIIKYSPQAFMNFTRKSTVGFSIGNVVLDFTGGVASLAQMSVQSIDQGSWVN 214

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDHLQ 184
           FFGNIGKPLLAL    +SI FDLIFFYQHFVLYHTKASR+SFQ DPESTEPL+KDSDHL+
Sbjct: 215 FFGNIGKPLLAL----ISIMFDLIFFYQHFVLYHTKASRISFQLDPESTEPLVKDSDHLK 273

Query: 185 GIA 188
           G++
Sbjct: 275 GLS 273

[Close]

BLAST of Lsi05G004700 vs. ExPASy TrEMBL
Match: A0A6J1EJ63 (cystinosin homolog OS=Cucurbita moschata OX=3662 GN=LOC111435077 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S    M + +   QAFLNFTRKST+GFSI  +VLDF GGVATL QM VQSIDQGSWVN
Sbjct: 187 FNSIQVLMTVIKYSPQAFLNFTRKSTMGFSIHTVVLDFIGGVATLTQMGVQSIDQGSWVN 246

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDHLQ 184
           FFGNIGKPLLA     VSI FDLIFFYQHFVLY  KAS+VS QRDPESTE L+++SDHLQ
Sbjct: 247 FFGNIGKPLLA----SVSIVFDLIFFYQHFVLYRVKASKVSSQRDPESTEALLENSDHLQ 306

Query: 185 GIATAS 191
           GIAT +
Sbjct: 307 GIATTN 308

[Close]

BLAST of Lsi05G004700 vs. NCBI nr
Match: XP_038884268.1 (cystinosin homolog isoform X4 [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 8.2e-70
Identity = 140/152 (92.11%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 39  AWQPESLKDSHCYLRCSMVLCSSLLFYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNI 98
           AWQPESL+D HCYL CSMVL SSLLFYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNI
Sbjct: 117 AWQPESLEDIHCYLCCSMVLRSSLLFYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNI 176

Query: 99  VLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH 158
           VLDFTGGV TLAQMSVQSIDQGSWVNFFGNIGKPLLAL    VSI FDLIFFYQHFVLYH
Sbjct: 177 VLDFTGGVGTLAQMSVQSIDQGSWVNFFGNIGKPLLAL----VSIGFDLIFFYQHFVLYH 236

Query: 159 TKASRVSFQRDPESTEPLIKDSDHLQGIATAS 191
            KASRVSFQRDPESTEPLIKDSDHLQGIAT S
Sbjct: 237 IKASRVSFQRDPESTEPLIKDSDHLQGIATTS 264

[Close]

BLAST of Lsi05G004700 vs. NCBI nr
Match: XP_016900860.1 (PREDICTED: cystinosin homolog isoform X1 [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 3.8e-51
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM + +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVN
Sbjct: 101 FNSIQVFMTVIKYSPQAFLNFTRKSTVGFSIGNIVLDFSGGVATLAQMSVQSVDQGSWVN 160

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPEST--EPLIKDSDH 184
           F GNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH KASRVSFQRDPEST  EPLIKDSDH
Sbjct: 161 FLGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHIKASRVSFQRDPESTDSEPLIKDSDH 220

Query: 185 LQGIATAS 191
           LQGIAT S
Sbjct: 221 LQGIATTS 228

[Close]

BLAST of Lsi05G004700 vs. NCBI nr
Match: XP_016900861.1 (PREDICTED: cystinosin homolog isoform X2 [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 3.8e-51
Identity = 109/128 (85.16%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM + +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVN
Sbjct: 71  FNSIQVFMTVIKYSPQAFLNFTRKSTVGFSIGNIVLDFSGGVATLAQMSVQSVDQGSWVN 130

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPEST--EPLIKDSDH 184
           F GNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH KASRVSFQRDPEST  EPLIKDSDH
Sbjct: 131 FLGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHIKASRVSFQRDPESTDSEPLIKDSDH 190

Query: 185 LQGIATAS 191
           LQGIAT S
Sbjct: 191 LQGIATTS 198

[Close]

BLAST of Lsi05G004700 vs. NCBI nr
Match: XP_038884308.1 (cystinosin homolog isoform X9 [Benincasa hispida] >XP_038884317.1 cystinosin homolog isoform X9 [Benincasa hispida])

HSP 1 Score: 204.9 bits (520), Expect = 6.1e-49
Identity = 106/126 (84.13%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM   +   QAFLNFTRKSTVGFSIGNIVLDFTGGV TLAQMSVQSIDQGSWVN
Sbjct: 104 FNSIQVFMTFIKYSPQAFLNFTRKSTVGFSIGNIVLDFTGGVGTLAQMSVQSIDQGSWVN 163

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDHLQ 184
           FFGNIGKPLLAL    VSI FDLIFFYQHFVLYH KASRVSFQRDPESTEPLIKDSDHLQ
Sbjct: 164 FFGNIGKPLLAL----VSIGFDLIFFYQHFVLYHIKASRVSFQRDPESTEPLIKDSDHLQ 223

Query: 185 GIATAS 191
           GIAT S
Sbjct: 224 GIATTS 225

[Close]

BLAST of Lsi05G004700 vs. NCBI nr
Match: XP_038884260.1 (cystinosin homolog isoform X3 [Benincasa hispida])

HSP 1 Score: 204.9 bits (520), Expect = 6.1e-49
Identity = 106/126 (84.13%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM   +   QAFLNFTRKSTVGFSIGNIVLDFTGGV TLAQMSVQSIDQGSWVN
Sbjct: 155 FNSIQVFMTFIKYSPQAFLNFTRKSTVGFSIGNIVLDFTGGVGTLAQMSVQSIDQGSWVN 214

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDHLQ 184
           FFGNIGKPLLAL    VSI FDLIFFYQHFVLYH KASRVSFQRDPESTEPLIKDSDHLQ
Sbjct: 215 FFGNIGKPLLAL----VSIGFDLIFFYQHFVLYHIKASRVSFQRDPESTEPLIKDSDHLQ 274

Query: 185 GIATAS 191
           GIAT S
Sbjct: 275 GIATTS 276

[Close]

BLAST of Lsi05G004700 vs. TAIR 10
Match: AT5G40670.1 (PQ-loop repeat family protein / transmembrane family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 65  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVN 124
           + S   FM   +   QA +NFTRKSTVG+SIGNI+LDFTGG+A   QM +QSIDQ SW N
Sbjct: 155 FNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKN 214

Query: 125 FFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDH 183
           F+GN+GK LL+L    +SI FD++F +QH+VLY  K    S +   ES EPLI DS H
Sbjct: 215 FYGNMGKTLLSL----ISIFFDILFMFQHYVLYPEKKVSKSPETGEESNEPLI-DSSH 267

The following BLAST results are available for this feature:

BLAST of Lsi05G004700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P57758	2.0e-26	55.08	Cystinosin homolog OS=Arabidopsis thaliana OX=3702 GN=At5g40670 PE=2 SV=1	[more]
Q09500	8.7e-14	52.56	Cystinosin homolog OS=Caenorhabditis elegans OX=6239 GN=ctns-1 PE=3 SV=2	[more]
A8WN56	1.9e-13	43.12	Cystinosin homolog OS=Caenorhabditis briggsae OX=6238 GN=ctns-1 PE=3 SV=1	[more]
Q54WT7	3.3e-13	41.00	Cystinosin homolog OS=Dictyostelium discoideum OX=44689 GN=ctns PE=3 SV=1	[more]
A7MB63	9.6e-13	46.07	Cystinosin OS=Bos taurus OX=9913 GN=CTNS PE=2 SV=1	[more]

BLAST of Lsi05G004700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DYQ8	1.9e-51	85.16	cystinosin homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491742 PE=4 SV=1	[more]
A0A1S4DY01	1.9e-51	85.16	cystinosin homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491742 PE=4 SV=1	[more]
A0A0A0LB92	6.2e-47	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G596240 PE=4 SV=1	[more]
A0A6J1DN06	4.0e-46	77.24	cystinosin homolog OS=Momordica charantia OX=3673 GN=LOC111021514 PE=4 SV=1	[more]
A0A6J1EJ63	1.5e-40	71.43	cystinosin homolog OS=Cucurbita moschata OX=3662 GN=LOC111435077 PE=4 SV=1	[more]

BLAST of Lsi05G004700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884268.1	8.2e-70	92.11	cystinosin homolog isoform X4 [Benincasa hispida]	[more]
XP_016900860.1	3.8e-51	85.16	PREDICTED: cystinosin homolog isoform X1 [Cucumis melo]	[more]
XP_016900861.1	3.8e-51	85.16	PREDICTED: cystinosin homolog isoform X2 [Cucumis melo]	[more]
XP_038884308.1	6.1e-49	84.13	cystinosin homolog isoform X9 [Benincasa hispida] >XP_038884317.1 cystinosin hom...	[more]
XP_038884260.1	6.1e-49	84.13	cystinosin homolog isoform X3 [Benincasa hispida]	[more]

BLAST of Lsi05G004700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40670.1	1.4e-27	55.08	PQ-loop repeat family protein / transmembrane family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006603	PQ-loop repeat	PFAM	PF04193	PQ-loop	coord: 80..117 e-value: 1.3E-8 score: 34.5
IPR005282	Lysosomal cystine transporter	PANTHER	PTHR13131	CYSTINOSIN	coord: 72..174
None	No IPR available	PANTHER	PTHR13131:SF8	CYSTINOSIN-LIKE PROTEIN	coord: 72..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G004700.1	Lsi05G004700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015811	L-cystine transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0015184	L-cystine transmembrane transporter activity