Lsi05G004660 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAATCCATCGTTCAAAAATGCGAAGCGCTCAACATTACAAATTCATAACCATTCGCGCAATTATTTCTACTTCCTCTGAATCTGAAGAAGCTTCAATCTGTCCGAACGTCCCGGATTTCTCTCCAGCGTAATCTTCTCTTCTAGTCTCTCGTTCTTTTTTTCTTTTTTTTTTTCCTTTTTTGGATTTTCAAATGATTTTTGAACTGATTGATCGAAACTTACTTGTACTTTGATCTGTTTCGTTGCTGAAATGGAAAATTTCCTCTTCGCTTATGGGTTTAAGTTCGTCAGTCTCGTCCTCTTTCTGCGAAGATATGGTGGCCGGTGGGAGAGATTTGCTTCTGTTCCTTTGTGTATTTGAGGAGTTTTCATTACTATTTACGAGCTGCCTCTTTCTGGTTAACTCACTGAAGAAATCATTGCAGATTAAGTGCTTGATAGATTATTTTACTGAATACTTCTTGTTGAATGAGTATTAGTTTTCGTTTCTGAGATGTTTGTATTTTTACATATCGACGCCCGGAGATGGCGATGGTGCACTTCTGCTCACATAGTGCTACGGGAATTTGTTGCCTTCAATTGAACACTTCATTAGTTTTGACTTTAGATAATGAGATAATCGTGATTACGAGTTTTTATTATGATTGAGGAGTTTGATAGTGGATTGAAAGTGCATTTACTTCTTCCATTCCCTGGTTATCAAAGCCGAGGAATCGATTACTCCTCTGTTTGTTTTCTTGTAGTCATTTCAAGAAGTGATATAAGTGATTTTCATGCGATGATTTTGGGTTTTCAAGATATCTTTACTAATCCTTCTTTGAAATTCGCGGATTCCTTTCTTGAAGGAAGGGCAGTTCAGTTCTCGCATTTTAACTCTGTTAGCTAATTTAACGCAGTGTGCTTGTGCGGTACCCTGGTGTTACATTGTTATGTCAAAGCATCAATCTGATGCAGCTGGCCAAGATAAACTCGAACCTGATAGCTTCAGTTACTTCAAACGGGAAGTTATAGATTTGTTATCTCAAGAGGATAATCTACCTTCTCCTCCCCATAATTCACGGATATCTGGAGCTTCACCTCCATTTGGTGATTGCATAGGACCTAAGCTGTCTCATTTTAAAAAAGAAAAGCTGAAGACATTGCTCCGGCAGAGTGTTGCTATTCTTTCAAAAGAAGTAAATGAGGTATATGCAAAGATAATTGGGTTACAAAATCTCAGGTTGTCGAGTATAACCTGGCACCGAGCTTGTTATTTTCTTGATAATTTAATAACTATTTTATGAATTGTGGAGTAAACTCCATCTTTTTGGTTATGTTTTGAACTCAACTCAATTTAACAGTTGTTCAACATATAGAAACTTGTTGCTAAAGCATTATACATGAAAGCATAATTACAAAATTATTCTGGAAAATTATTCTCTCAGAATTTAATTGGCATCTTGCTATCCTGATAGATATGATCAGTATTCTTGAATCGTTTTCAACGGTCATCCTTTTGGTAAAGAAAATGAAATTATATGGATTTGCTTCATCAGACCTTTTTTTTTGTCATATATGGTTGGAACATACTCGCCGTATCTTTGATGATAAGGCCACGTGTTTTGACACGTTCTTTGATCACATAACATATATAGCACTTCTTGGTGTAAATTTACCCTGTCTTTAGCTCTTATAGTCTTACTTCTCTTATTGCCCAATGGAAATAATTTTTGCAATTCCTTTGGCACATAGTTTGCCCTCTTTTGTAATTTCATCTTATCATGAAAGAATTCTATGTTTCTCATAAAAAAAAAGGGAAGGAAAAAAAAAGAGTAAAGAAAGGAGAACTGCCAAAGATATAAATATTTTTTCTAGCTGATTTCGTCTTCTTCTTTCTTTCTTTCATTTCTCAAAATCATGAAAGCTCGAAATGACAACATTTGTTAATTCAATGAATGGATTTCCCATTATAATTGTTACTATTGTGCTGCTGCAGATGCTCGAGCCTGCTCTATCTACCCAGCACTTGAAGTCATATTTGAGATCCAACAAGAACTTGGAAAATGTGGAAAAAATAGCTATGAATGATGTGGAGCAAGCTCCTTGTAAGAAACTCAGATCCTTATCCTCTTCAACCAGCCTATCTGCACATGAGGATTGTGCTAATCTTGGATCTAGTATAGTGGTAAATCTCGAAATCTACATATGCATTTTGATTTACAGTAGTAATTAACAGTATGGTGAAATTGAACTGATGTATCTCCCCCATCTTCTTGTGAGTTGTACAGTACCTTGGGTGAATGGAATCTTTCTGGATGATTCTAAATATCCTTTCACTCAATAAGTGAAATCTAGATTCATGCTGAAATCCATACTATTTGTTTGAGTTAGAGTCATAGATTTGTCATGTTATTTTGAGGTCTAAAGTTAAAATATTTTAATTACAAGAACTGAGCAGTTTGTTTGGGAGAAGCCAAAATATGGGTGTTGTCTTGGTTATTTAGATAAATATCTAGAATTTTTTTTCTTCATTAAATTAATAATAATAAATGTTAAGGATAGTGTGTTCAAAAGCAAAGAAAGCTGGTAGGTTTTAATATGAAATTATGGTTTGGTCATTTGGTATGCAATCTATAAATGCTCAAGTTGATTTTTTCTCAAATGCCAATTTCGTAGTTCCTCTCGTTCCTTTTAAATTGTTAGTACCTTAATTCAAGACTGACATTTCGGGGATGGGAGGTTGCATGCTTTTAACATTCTAGTTAAATTTTTGGAAACCCCTTTGCATGCTGTTCAATATCTTGTTGATCAGGCTGCACCCCATGATTCCATATTATGATCTTCCACTAATCGGAAGAAAGAAAATGGTTTTTCTACCTCCCTTCAACTGGACTTAGTTAGTTGCCAATGGAAAAGATCTTTGGCTTTTAGCAAATTTGACAAAACTTTATGTGTCTTGTGTGCTAAGAAAGAAGAAAATAGTGGATCAAGAAAATCTGTTGTAAGTAATTTTTCAATTTCTTTGTCAGAGGCAAAAAGTGTATTTCGTTGGCATAACAGTGCATGGTAGTGGTCTAGTTTTGTGCAGACTTCAAAATTTATATTATTTTTTGCTTATCCTTCTTTCTTTCATGTCAGATAAATGATGAATTGCAATTTTTTCTAGAGAACAATAGCGAGCAGATCGAAGACATAGTGACGGAACTTTCAAATGATCTATATGGAACAGTAACATTCTATTATCCGTTGCCCTTTTTTCTTTGATTTATATTTGTATGCCCATCCAATTACTTTCAGTAATATGTAATGCTATTGGATCATGTCACTAATGTATATTCAGTTTTAATACTATTATTACACTACCGTTTTTATACTTCAACTGCTAATTAACATCGAATAATGATTTGCCAGCTAGGGCACATGGAGCAACAACTTGAGGAAGTTCTTGATTCTGTACTATCAAACTGCAGGTGTGGCATTAAATTATAGAGAGAGAGAGATAGAGAGAGAGTGAGGGAAGTAAAAACAGAAGATTTAGGCATAGCATGGCGGTGAGCCAGCATGTTATAACTGATAACTTTGAAGCCAGCCTACCTTTATTCCTCTTGTGAGAATGTATTGTGCTTCAATAATGGAGTCAAATCACTACGTTGCCTTTCTTGTTCATTTTATCATGTACAAACTTTGGTGAATCTGTTAAATTTTCTTTCTGTTCAGAAATTTTGTAAAAGTATCAACTTTTTATTTTTTATTTTTATTTATTTATTTTTAAATGGATACCAGGAATCAACTGTTTATCCTCCACATTATATTTCCCTATGAATGGCCCAAATGCGTCAATAAATTTCTTTTTTTATCTGCCTAGTTAACTATCAGCTTTTATTTCAGGCCTATGACCTTCAAGGAAAAGGAACAGCTTCAGAAATTGGTTCAGGAGCTTCCATCAGAAAATCTTGGCCGTGTTGCAGAAATAGTTATCCAACATAGGACCGATGAAACAGATTCGGCTGATGAAATCCATGTTGATTTGGATAAAGAGGTAAGTGAAACAGCGCACATTAATGCATGGAATAGTAACCATAGACTGAATCTTAGTGTGTATATGTGTTTATTTTTATTTTGCAGAAGAACACCACTCTCTGGAGATTGTATTACTATGTCGAAGCAGTTGAGAAAGCAAAGAAGCTAGCATCAGGATGA AAAAAAATCCATCGTTCAAAAATGCGAAGCGCTCAACATTACAAATTCATAACCATTCGCGCAATTATTTCTACTTCCTCTGAATCTGAAGAAGCTTCAATCTGTCCGAACGTCCCGGATTTCTCTCCAGCTGTGCTTGTGCGGTACCCTGGTGTTACATTGTTATGTCAAAGCATCAATCTGATGCAGCTGGCCAAGATAAACTCGAACCTGATAGCTTCAGTTACTTCAAACGGGAAGTTATAGATTTGTTATCTCAAGAGGATAATCTACCTTCTCCTCCCCATAATTCACGGATATCTGGAGCTTCACCTCCATTTGGTGATTGCATAGGACCTAAGCTGTCTCATTTTAAAAAAGAAAAGCTGAAGACATTGCTCCGGCAGAGTGTTGCTATTCTTTCAAAAGAAGTAAATGAGATGCTCGAGCCTGCTCTATCTACCCAGCACTTGAAGTCATATTTGAGATCCAACAAGAACTTGGAAAATGTGGAAAAAATAGCTATGAATGATGTGGAGCAAGCTCCTTGTAAGAAACTCAGATCCTTATCCTCTTCAACCAGCCTATCTGCACATGAGGATTGTGCTAATCTTGGATCTAGTATAGTGCTAGGGCACATGGAGCAACAACTTGAGGAAGTTCTTGATTCTGTACTATCAAACTGCAGGCCTATGACCTTCAAGGAAAAGGAACAGCTTCAGAAATTGGTTCAGGAGCTTCCATCAGAAAATCTTGGCCGTGTTGCAGAAATAGTTATCCAACATAGGACCGATGAAACAGATTCGGCTGATGAAATCCATGTTGATTTGGATAAAGAGAAGAACACCACTCTCTGGAGATTGTATTACTATGTCGAAGCAGTTGAGAAAGCAAAGAAGCTAGCATCAGGATGA ATGTCAAAGCATCAATCTGATGCAGCTGGCCAAGATAAACTCGAACCTGATAGCTTCAGTTACTTCAAACGGGAAGTTATAGATTTGTTATCTCAAGAGGATAATCTACCTTCTCCTCCCCATAATTCACGGATATCTGGAGCTTCACCTCCATTTGGTGATTGCATAGGACCTAAGCTGTCTCATTTTAAAAAAGAAAAGCTGAAGACATTGCTCCGGCAGAGTGTTGCTATTCTTTCAAAAGAAGTAAATGAGATGCTCGAGCCTGCTCTATCTACCCAGCACTTGAAGTCATATTTGAGATCCAACAAGAACTTGGAAAATGTGGAAAAAATAGCTATGAATGATGTGGAGCAAGCTCCTTGTAAGAAACTCAGATCCTTATCCTCTTCAACCAGCCTATCTGCACATGAGGATTGTGCTAATCTTGGATCTAGTATAGTGCTAGGGCACATGGAGCAACAACTTGAGGAAGTTCTTGATTCTGTACTATCAAACTGCAGGCCTATGACCTTCAAGGAAAAGGAACAGCTTCAGAAATTGGTTCAGGAGCTTCCATCAGAAAATCTTGGCCGTGTTGCAGAAATAGTTATCCAACATAGGACCGATGAAACAGATTCGGCTGATGAAATCCATGTTGATTTGGATAAAGAGAAGAACACCACTCTCTGGAGATTGTATTACTATGTCGAAGCAGTTGAGAAAGCAAAGAAGCTAGCATCAGGATGA MSKHQSDAAGQDKLEPDSFSYFKREVIDLLSQEDNLPSPPHNSRISGASPPFGDCIGPKLSHFKKEKLKTLLRQSVAILSKEVNEMLEPALSTQHLKSYLRSNKNLENVEKIAMNDVEQAPCKKLRSLSSSTSLSAHEDCANLGSSIVLGHMEQQLEEVLDSVLSNCRPMTFKEKEQLQKLVQELPSENLGRVAEIVIQHRTDETDSADEIHVDLDKEKNTTLWRLYYYVEAVEKAKKLASG Homology
BLAST of Lsi05G004660 vs. ExPASy Swiss-Prot
Match: Q84XV2 (Transcription factor GTE1 OS=Arabidopsis thaliana OX=3702 GN=GTE1 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 8.5e-06 Identity = 43/162 (26.54%), Postives = 79/162 (48.77%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy Swiss-Prot
Match: O60885 (Bromodomain-containing protein 4 OS=Homo sapiens OX=9606 GN=BRD4 PE=1 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05 Identity = 45/175 (25.71%), Postives = 84/175 (48.00%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy Swiss-Prot
Match: Q9FT54 (Transcription factor GTE6 OS=Arabidopsis thaliana OX=3702 GN=GTE6 PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 3.2e-05 Identity = 38/134 (28.36%), Postives = 70/134 (52.24%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy Swiss-Prot
Match: Q9ESU6 (Bromodomain-containing protein 4 OS=Mus musculus OX=10090 GN=Brd4 PE=1 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 9.4e-05 Identity = 46/176 (26.14%), Postives = 79/176 (44.89%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy Swiss-Prot
Match: Q08D75 (Bromodomain-containing protein 4A OS=Xenopus laevis OX=8355 GN=brd4-a PE=2 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 1.6e-04 Identity = 27/73 (36.99%), Postives = 41/73 (56.16%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy TrEMBL
Match: A0A1S3BNY6 (uncharacterized protein LOC103491717 OS=Cucumis melo OX=3656 GN=LOC103491717 PE=4 SV=1) HSP 1 Score: 360.9 bits (925), Expect = 4.1e-96 Identity = 198/271 (73.06%), Postives = 211/271 (77.86%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy TrEMBL
Match: A0A6J1DGV0 (uncharacterized protein LOC111019964 OS=Momordica charantia OX=3673 GN=LOC111019964 PE=4 SV=1) HSP 1 Score: 349.4 bits (895), Expect = 1.2e-92 Identity = 195/272 (71.69%), Postives = 210/272 (77.21%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy TrEMBL
Match: A0A6J1JG61 (bromodomain-containing protein 4A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486618 PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 1.0e-91 Identity = 194/273 (71.06%), Postives = 210/273 (76.92%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy TrEMBL
Match: A0A6J1JMP5 (bromodomain-containing protein 4A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486618 PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 1.0e-91 Identity = 194/273 (71.06%), Postives = 210/273 (76.92%), Query Frame = 0
BLAST of Lsi05G004660 vs. ExPASy TrEMBL
Match: A0A5D3DUN6 (NET domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00980 PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 5.2e-91 Identity = 190/268 (70.90%), Postives = 203/268 (75.75%), Query Frame = 0
BLAST of Lsi05G004660 vs. NCBI nr
Match: XP_038893520.1 (uncharacterized protein LOC120082425 isoform X1 [Benincasa hispida]) HSP 1 Score: 399.1 bits (1024), Expect = 2.8e-107 Identity = 213/272 (78.31%), Postives = 226/272 (83.09%), Query Frame = 0
BLAST of Lsi05G004660 vs. NCBI nr
Match: XP_011651583.1 (uncharacterized protein LOC101211269 isoform X1 [Cucumis sativus] >KAE8650792.1 hypothetical protein Csa_017467 [Cucumis sativus]) HSP 1 Score: 376.3 bits (965), Expect = 2.0e-100 Identity = 203/271 (74.91%), Postives = 219/271 (80.81%), Query Frame = 0
BLAST of Lsi05G004660 vs. NCBI nr
Match: XP_038893528.1 (uncharacterized protein LOC120082425 isoform X2 [Benincasa hispida]) HSP 1 Score: 369.8 bits (948), Expect = 1.8e-98 Identity = 195/244 (79.92%), Postives = 210/244 (86.07%), Query Frame = 0
BLAST of Lsi05G004660 vs. NCBI nr
Match: XP_008450000.1 (PREDICTED: uncharacterized protein LOC103491717 [Cucumis melo]) HSP 1 Score: 360.9 bits (925), Expect = 8.5e-96 Identity = 198/271 (73.06%), Postives = 211/271 (77.86%), Query Frame = 0
BLAST of Lsi05G004660 vs. NCBI nr
Match: XP_023529857.1 (bromodomain-containing protein 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 349.7 bits (896), Expect = 2.0e-92 Identity = 196/273 (71.79%), Postives = 211/273 (77.29%), Query Frame = 0
BLAST of Lsi05G004660 vs. TAIR 10
Match: AT5G40600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 118.6 bits (296), Expect = 6.8e-27 Identity = 88/235 (37.45%), Postives = 135/235 (57.45%), Query Frame = 0
BLAST of Lsi05G004660 vs. TAIR 10
Match: AT3G27420.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40600.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). ) HSP 1 Score: 95.1 bits (235), Expect = 8.1e-20 Identity = 76/243 (31.28%), Postives = 125/243 (51.44%), Query Frame = 0
BLAST of Lsi05G004660 vs. TAIR 10
Match: AT2G34900.2 (Transcription factor GTE6 ) HSP 1 Score: 52.4 bits (124), Expect = 6.0e-07 Identity = 43/162 (26.54%), Postives = 79/162 (48.77%), Query Frame = 0
BLAST of Lsi05G004660 vs. TAIR 10
Match: AT2G34900.1 (Transcription factor GTE6 ) HSP 1 Score: 52.4 bits (124), Expect = 6.0e-07 Identity = 43/162 (26.54%), Postives = 79/162 (48.77%), Query Frame = 0
BLAST of Lsi05G004660 vs. TAIR 10
Match: AT3G52280.1 (general transcription factor group E6 ) HSP 1 Score: 50.4 bits (119), Expect = 2.3e-06 Identity = 38/134 (28.36%), Postives = 70/134 (52.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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