Lsi05G002440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G002440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCaspase-6 protein
Locationchr05: 3190470 .. 3193135 (+)
RNA-Seq ExpressionLsi05G002440
SyntenyLsi05G002440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTCGTGGCAAAGATTAGTACCCTCGTAAAACCCTCGTCTTCATCTTCCTGAATTTTCATCGAACCAAGAACTGCACTGCTAAAATGGCTTGGCGCTCATCTGGATCTCTATCTCGCTCCCTCATTTCCTCTATTAGGACTTCTTCTCTCCGATCGGCTCCTTCTCTTCCTCGCCTCCGCCCGCCACCTCTCGCCGCTCGACCTCGCCTTCAATCTCGTCGCCTTTCTTTTTCGACTTCGAGGTACTTCACAAGTTACTCAATTACCTGTTTGGTTTCTGTGCGAAAAGAGTTGACGAATGATTTGCTGAGAAAGAAATGCAGTTGAATTGCGATGTATTTGATGCTAGATGCTTGTTTCTGTTGCCGTGTTGATCTCTGTTTACTATTGATTCCTACTTATGTGAAATTCAAAATTATCTGGTTCTTTTCATCGCATTTTAGGTTGAATTTTAGCTATTTATGTTTTTTTATCTTTAATTTTTATGCGTTTTTTATTTGAAATTTTATTATTATTATTATCATTCCCTATTTTTTGATTAGTTTTACGAAAAAGAGTTGCTTGTCAAGTTATTTGTGATTGCATTATAAAAGAATTACATAATTCTTGTACACATTACCCTTACATTCCGACGCAACAATAGACCTAACCATTTTCTGCTTTAAATTGAAATAATGTTTTAAACCCAACTCAAATCATGATCTTCATCGCATATAACTTCCCACATCTTAGGTTATTGAAACAAATTGTCAGACTGTCAGTTGATGGTGTTCATTTTTTTTTTAAAAAAATAAGAATAACTACTTTTATTGAGAACAAAAATGAAAGAATACAATGGGCATACAAAAAACACCCCGCCCACAAAAACACTTCCCCCTACAGGACTAAACCTCACTAGCATCCTTATTCACTCCTCTAAAAATCCTACTATTTTGCTCTACCGACAAAACCCACAAAATTGCACACCCCTGCAAGCCACAAAAAATGACCCTTTTCCCCACAAGGCGGATTGAGGAGGAACTCCTCAACCATAGCACTAACACCCCTCTGGCGAGCAAACAAAAAGCCAAACTCCTAGATGAAACACTCCCAAACAGAACTAGCAAACTCGCAACGCCAAAGAATATGATCCAAATCTTCCTCCACCTTCTGACAAAGGATACAACAGAACGACCCAATGAGCGAGAAAAACTTCCCGGTAAGACGATCCATCATATTCGCACGACCATGTAAAACTTGCCAGGTGAAGAATCTCACTTTCCTAGGAACCTTAATCCTCCAAAGTACCGAAAAAACTGAGTCATCTAAAGGATAATGGTCCATGAGACTCTGAAAAAAAGACTTACAGAAGAACCCCTCCAAAGGACTGGGTCTTTGAATCCTCACATCCCTTCTCCCACGCCTAAAAGAGTGATTCTCAAGCAAAGAAAGAAGAGAAGCAATATTAGTTGTCTCCCTATTGGAAAGGTGACGACAAAACCCAAACGAGAAGGAACAAGAGCTCCCAGACCACACAAGAAAGTCAACAACAAAGTCATTTTTAAGAGACGACAAATGGCAAAGTCTAGGATATAAGGCACAAAGAGGTCTTTGACCCACCCAATGATCCTCCCAAAAAAAAGTATTCCTAATGATGGGGATGTTTGGGAGTTGAAATATCCATAAATAACTTGTCACATTGCCGTGGTTACTTTTCACTGATGTCAGGGATGTCTGGTAAACTATAATTAATGGACAGAGACACTGATGAAGCTTTTAGAGGTATAGGAACCAGCTAAAAAGTAATTTAGCCAAATATTACAGATGGAAGACAACACTTCAAGAGCTTACTGAAAGGAGGTTAATGTAGGAAGGAGTGCAGTTACGAAAATTTAGAGGCAGAGCTCCAGAGAAAAAAAAACTAACAAATATTCTCCCCCATTAACTAGATGTTTTTACACTCTTCAGTCTTGTCGGAACATCTTACTATTTCTTTCCAATCATAAATACCTATAATTACTCTAGAAGCATAATTCCAAGTTGAAGCAAGAAGAAAAGTCACTTGAGTTTTGAGTTTTGATTTTTGGGTGCCCACACTCCCAAAGAAGGGAGTGGGCCACTCACTCTAGCTTAACCCAACTTCCATGGATCATTTTTTGCTTTGGGTCCAACCTTAACAACTTCATAACTTCGGAGAAATACTTTTCAGGTATACACAGCCAGTCAAATTTCATATTACCTTAATTATGGCCTTCTCAACTCTGCTGAAATCGAAGTTTTTTAATCACATGAAAGAGAACCCCAGAAACATTTTCAATGTATTCTAGTCTCCTCTACTCCATATGCTAATCGAAAAATTTGTCACATTGTTACTTATTATCTTGTCTCTCGCCCACTCTAGGATGTCCTCTACAGTTTCTCAGTTAAAAAAATCTCTGTAATATTCACTTTGTGGTGCTTGATTGCAATTTTCTGGATTTCTTTCATGAGTTAGGCATGATTTACCCCTTTTTGTTTCAAAATGCCATTTCCAGGAACTTGGGAGAACTGGGATGCACACAGTCTCTTCTGCCCATGCACGGCATCATGGGTGCTACTTGCCTGACATCCCACCTATGTGTTAGCGCACGGGCTTTTTGCGAGCTGTCTCATGGTACCTTCTGCCGTACTTGTCAGGATCGCTAG

mRNA sequence

CATTTCGTGGCAAAGATTAGTACCCTCGTAAAACCCTCGTCTTCATCTTCCTGAATTTTCATCGAACCAAGAACTGCACTGCTAAAATGGCTTGGCGCTCATCTGGATCTCTATCTCGCTCCCTCATTTCCTCTATTAGGACTTCTTCTCTCCGATCGGCTCCTTCTCTTCCTCGCCTCCGCCCGCCACCTCTCGCCGCTCGACCTCGCCTTCAATCTCGTCGCCTTTCTTTTTCGACTTCGAGGAACTTGGGAGAACTGGGATGCACACAGTCTCTTCTGCCCATGCACGGCATCATGGGTGCTACTTGCCTGACATCCCACCTATGTGTTAGCGCACGGGCTTTTTGCGAGCTGTCTCATGGTACCTTCTGCCGTACTTGTCAGGATCGCTAG

Coding sequence (CDS)

ATGGCTTGGCGCTCATCTGGATCTCTATCTCGCTCCCTCATTTCCTCTATTAGGACTTCTTCTCTCCGATCGGCTCCTTCTCTTCCTCGCCTCCGCCCGCCACCTCTCGCCGCTCGACCTCGCCTTCAATCTCGTCGCCTTTCTTTTTCGACTTCGAGGAACTTGGGAGAACTGGGATGCACACAGTCTCTTCTGCCCATGCACGGCATCATGGGTGCTACTTGCCTGACATCCCACCTATGTGTTAGCGCACGGGCTTTTTGCGAGCTGTCTCATGGTACCTTCTGCCGTACTTGTCAGGATCGCTAG

Protein sequence

MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGCTQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR
Homology
[Close]
BLAST of Lsi05G002440 vs. ExPASy TrEMBL
Match: A0A6J1D7P5 (uncharacterized protein LOC111017781 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017781 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 6   SGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGCTQSLL 65
           SGSLSRSLIS++R SSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGCTQSLL
Sbjct: 5   SGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGCTQSLL 64

Query: 66  PMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           PMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR
Sbjct: 65  PMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 101

[Close]
BLAST of Lsi05G002440 vs. ExPASy TrEMBL
Match: A0A6J1J861 (uncharacterized protein LOC111482625 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482625 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.2e-43
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60
           MAWRSSGSLSR+LISS+R SSLRS+PSLPRLR PPL ARPRLQSRRL+FSTSRNLGELGC
Sbjct: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRNLGELGC 60

Query: 61  TQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           TQSLLPMH IMGATCLTSHLCV ARAFCELSHGTFCRTCQDR
Sbjct: 61  TQSLLPMHSIMGATCLTSHLCVGARAFCELSHGTFCRTCQDR 102

[Close]
BLAST of Lsi05G002440 vs. ExPASy TrEMBL
Match: A0A6J1FMT0 (uncharacterized protein LOC111446884 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446884 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.5e-42
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60
           MAWR SGSLSRSLIS++R SSLRSAPSLPRL PPPLAARPRLQSRRLSFSTSRNLGELGC
Sbjct: 1   MAWRPSGSLSRSLISTVRASSLRSAPSLPRLHPPPLAARPRLQSRRLSFSTSRNLGELGC 60

Query: 61  TQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           TQSLL MH I+GATCLTSHLCVS RAFCELSHGTFCRTCQDR
Sbjct: 61  TQSLLSMH-IVGATCLTSHLCVSVRAFCELSHGTFCRTCQDR 101

[Close]
BLAST of Lsi05G002440 vs. ExPASy TrEMBL
Match: A0A6J1E9X4 (uncharacterized protein LOC111430696 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430696 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.0e-40
Identity = 90/102 (88.24%), Postives = 94/102 (92.16%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60
           MAWRSSGSLSR+LISS+R+SSLRS+PSLPRLR PPL ARP     RLSFSTSRNLGELGC
Sbjct: 30  MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPLTARP-----RLSFSTSRNLGELGC 89

Query: 61  TQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           TQSLLPMH IMGATCLTSHLCVSARAFCELSHGTFCRTCQDR
Sbjct: 90  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 126

[Close]
BLAST of Lsi05G002440 vs. ExPASy TrEMBL
Match: A0A6J1J270 (uncharacterized protein LOC111482036 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482036 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 1  MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60
          MAWR SGSLSRSLIS++R SSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC
Sbjct: 1  MAWRPSGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60

Query: 61 TQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRT 99
          TQSLL MH I+GATCLTSHLCVS RAFCELSHGTFCRT
Sbjct: 61 TQSLLSMH-IVGATCLTSHLCVSVRAFCELSHGTFCRT 97

[Close]
BLAST of Lsi05G002440 vs. NCBI nr
Match: XP_038882967.1 (uncharacterized protein LOC120074027 isoform X1 [Benincasa hispida])

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-45
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60
           MAWRSSGSLSRSLISS+R SSLRSAPSLPRLRPPPLAARPR QSRRLSFSTSRNLGELGC
Sbjct: 1   MAWRSSGSLSRSLISSVRASSLRSAPSLPRLRPPPLAARPRPQSRRLSFSTSRNLGELGC 60

Query: 61  TQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           TQSLLPMH IMGATCLTSHLCVSARAFCELSHGTFCRTCQDR
Sbjct: 61  TQSLLPMHSIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 102

[Close]
BLAST of Lsi05G002440 vs. NCBI nr
Match: XP_022149347.1 (uncharacterized protein LOC111017781 isoform X1 [Momordica charantia] >XP_022149348.1 uncharacterized protein LOC111017781 isoform X1 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 6   SGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGCTQSLL 65
           SGSLSRSLIS++R SSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGCTQSLL
Sbjct: 5   SGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGCTQSLL 64

Query: 66  PMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           PMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR
Sbjct: 65  PMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 101

[Close]
BLAST of Lsi05G002440 vs. NCBI nr
Match: XP_022984255.1 (uncharacterized protein LOC111482625 isoform X1 [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 4.6e-43
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60
           MAWRSSGSLSR+LISS+R SSLRS+PSLPRLR PPL ARPRLQSRRL+FSTSRNLGELGC
Sbjct: 1   MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRNLGELGC 60

Query: 61  TQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           TQSLLPMH IMGATCLTSHLCV ARAFCELSHGTFCRTCQDR
Sbjct: 61  TQSLLPMHSIMGATCLTSHLCVGARAFCELSHGTFCRTCQDR 102

[Close]
BLAST of Lsi05G002440 vs. NCBI nr
Match: XP_022941567.1 (uncharacterized protein LOC111446884 isoform X1 [Cucurbita moschata] >XP_022941568.1 uncharacterized protein LOC111446884 isoform X2 [Cucurbita moschata] >KAG7030962.1 hypothetical protein SDJN02_04999 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60
           MAWR SGSLSRSLIS++R SSLRSAPSLPRL PPPLAARPRLQSRRLSFSTSRNLGELGC
Sbjct: 1   MAWRPSGSLSRSLISTVRASSLRSAPSLPRLHPPPLAARPRLQSRRLSFSTSRNLGELGC 60

Query: 61  TQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           TQSLL MH I+GATCLTSHLCVS RAFCELSHGTFCRTCQDR
Sbjct: 61  TQSLLSMH-IVGATCLTSHLCVSVRAFCELSHGTFCRTCQDR 101

[Close]
BLAST of Lsi05G002440 vs. NCBI nr
Match: XP_023551739.1 (uncharacterized protein LOC111809622 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 1.9e-41
Identity = 91/102 (89.22%), Postives = 95/102 (93.14%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLISSIRTSSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSRNLGELGC 60
           MAWRSSGSLSR+LISS+R+SSLRS+PSLP LRPP L ARPRLQSRRLSFSTSR LGELGC
Sbjct: 1   MAWRSSGSLSRALISSVRSSSLRSSPSLPWLRPPSLTARPRLQSRRLSFSTSRKLGELGC 60

Query: 61  TQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           TQSLLPMH IMGATC TSHLCVSARAFCELSHGTFC TCQDR
Sbjct: 61  TQSLLPMHSIMGATCPTSHLCVSARAFCELSHGTFCHTCQDR 102

[Close]
BLAST of Lsi05G002440 vs. TAIR 10
Match: AT2G15000.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 80 Blast hits to 80 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 7.3e-23
Identity = 62/105 (59.05%), Postives = 79/105 (75.24%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLIS-SIRTSSLRS-APSLPRLRPPPLAARPRLQSRRLSFST-SRNLGE 60
           MAWR++GS +RS +S + R+ SLRS   +LPRLRPP    +  L SRR +FS+ SRNLG 
Sbjct: 1   MAWRNAGSAARSFVSATARSPSLRSPTTALPRLRPP----QSSLPSRRFTFSSPSRNLGA 60

Query: 61  LGCTQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           LGCTQS LP++ ++  + LTSHL V+ RAFCELS+GTF RTCQDR
Sbjct: 61  LGCTQSFLPLYSVVATSQLTSHLNVNLRAFCELSNGTFQRTCQDR 101

[Close]
BLAST of Lsi05G002440 vs. TAIR 10
Match: AT2G15000.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 80 Blast hits to 80 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 7.3e-23
Identity = 62/105 (59.05%), Postives = 79/105 (75.24%), Query Frame = 0 

Query: 1   MAWRSSGSLSRSLIS-SIRTSSLRS-APSLPRLRPPPLAARPRLQSRRLSFST-SRNLGE 60
           MAWR++GS +RS +S + R+ SLRS   +LPRLRPP    +  L SRR +FS+ SRNLG 
Sbjct: 1   MAWRNAGSAARSFVSATARSPSLRSPTTALPRLRPP----QSSLPSRRFTFSSPSRNLGA 60

Query: 61  LGCTQSLLPMHGIMGATCLTSHLCVSARAFCELSHGTFCRTCQDR 103
           LGCTQS LP++ ++  + LTSHL V+ RAFCELS+GTF RTCQDR
Sbjct: 61  LGCTQSFLPLYSVVATSQLTSHLNVNLRAFCELSNGTFQRTCQDR 101

[Close]
BLAST of Lsi05G002440 vs. TAIR 10
Match: AT2G15000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 70 Blast hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-18
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0 

Query: 1  MAWRSSGSLSRSLIS-SIRTSSLRS-APSLPRLRPPPLAARPRLQSRRLSFST-SRNLGE 60
          MAWR++GS +RS +S + R+ SLRS   +LPRLRPP    +  L SRR +FS+ SRNLG 
Sbjct: 1  MAWRNAGSAARSFVSATARSPSLRSPTTALPRLRPP----QSSLPSRRFTFSSPSRNLGA 60

Query: 61 LGCTQSLLPMHGIMGATCLTSHLCVSARAFCELSHGT 95
          LGCTQS LP++ ++  + LTSHL V+ RAFCELS+GT
Sbjct: 61 LGCTQSFLPLYSVVATSQLTSHLNVNLRAFCELSNGT 93

[Close]
BLAST of Lsi05G002440 vs. TAIR 10
Match: AT2G15000.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.1); Has 70 Blast hits to 70 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-18
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 1  MAWRSSGSLSRSLIS-SIRTSSLRS-APSLPRLRPPPLAARPRLQSRRLSFST-SRNLGE 60
          MAWR++GS +RS +S + R+ SLRS   +LPRLRPP    +  L SRR +FS+ SRNLG 
Sbjct: 1  MAWRNAGSAARSFVSATARSPSLRSPTTALPRLRPP----QSSLPSRRFTFSSPSRNLGA 60

Query: 61 LGCTQSLLPMHGIMGATCLTSHLCVSARAFCELSHG 94
          LGCTQS LP++ ++  + LTSHL V+ RAFCELS+G
Sbjct: 61 LGCTQSFLPLYSVVATSQLTSHLNVNLRAFCELSNG 92

[Close]
BLAST of Lsi05G002440 vs. TAIR 10
Match: AT2G15000.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.1); Has 70 Blast hits to 70 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-18
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 1  MAWRSSGSLSRSLIS-SIRTSSLRS-APSLPRLRPPPLAARPRLQSRRLSFST-SRNLGE 60
          MAWR++GS +RS +S + R+ SLRS   +LPRLRPP    +  L SRR +FS+ SRNLG 
Sbjct: 1  MAWRNAGSAARSFVSATARSPSLRSPTTALPRLRPP----QSSLPSRRFTFSSPSRNLGA 60

Query: 61 LGCTQSLLPMHGIMGATCLTSHLCVSARAFCELSHG 94
          LGCTQS LP++ ++  + LTSHL V+ RAFCELS+G
Sbjct: 61 LGCTQSFLPLYSVVATSQLTSHLNVNLRAFCELSNG 92

The following BLAST results are available for this feature:
BLAST of Lsi05G002440 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G002440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7P55.8e-4496.91uncharacterized protein LOC111017781 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1J8612.2e-4391.18uncharacterized protein LOC111482625 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FMT05.5e-4291.18uncharacterized protein LOC111446884 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1E9X43.0e-4088.24uncharacterized protein LOC111430696 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J2701.1e-3991.84uncharacterized protein LOC111482036 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Lsi05G002440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882967.11.3e-4596.08uncharacterized protein LOC120074027 isoform X1 [Benincasa hispida][more]
XP_022149347.11.2e-4396.91uncharacterized protein LOC111017781 isoform X1 [Momordica charantia] >XP_022149... [more]
XP_022984255.14.6e-4391.18uncharacterized protein LOC111482625 isoform X1 [Cucurbita maxima][more]
XP_022941567.11.1e-4191.18uncharacterized protein LOC111446884 isoform X1 [Cucurbita moschata] >XP_0229415... [more]
XP_023551739.11.9e-4189.22uncharacterized protein LOC111809622 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi05G002440 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G15000.47.3e-2359.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G15000.57.3e-2359.05unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G15000.11.4e-1856.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G15000.24.2e-1856.25unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G15000.34.2e-1856.25unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..43
NoneNo IPR availablePANTHERPTHR33156:SF26OS12G0592200 PROTEINcoord: 1..101
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G002440.1Lsi05G002440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane